Gcor013458.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055515.1:15816541-15817597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0011 0.09 13.6 1.6 1 23 105 128 105 128 0.90 2 8 0.00059 0.047 14.5 0.8 2 23 132 152 131 152 0.96 3 8 0.026 2 9.4 1.4 3 23 159 178 157 178 0.94 4 8 0.018 1.4 9.8 6.5 1 23 183 206 183 206 0.97 5 8 6.4e-05 0.0051 17.6 2.7 1 23 212 235 212 235 0.94 6 8 0.00043 0.034 15.0 2.5 1 23 241 263 241 263 0.96 7 8 1.3e-05 0.0011 19.7 0.5 1 23 269 292 269 292 0.98 8 8 3.2e-06 0.00025 21.6 0.4 2 23 301 322 300 322 0.96
Sequence Information
- Coding Sequence
- ATGACTGACTGCACGGCGAAAATCCAGCTTTGTAGGTTATGTCTTGCCAAAACCACAACTTTTTTTTCTCTCCTTGAAGACGAAAATTCGTCGATGTTGGAAGCCCTGACTGCCTTACGAATTTCACCCACGGATGGGATCTCCACCGTGATGTGTCTGAAATGTCGCCTCAACTTAAAACTCGCGTTTAGTATCCAACAGAGCATGATAAGCGCGGAGCAACGCTTCCGAGAGAAAGACATGATAACCCCTCATGACGTTGTCGAGGCAGAATGTGACGCCTTCAACGAGGAGGTACAAACTCCTATCGACTACACCTGTGATATTTGTGGTAAAGAAAAGTTTACCAAGGAGAATTTAAGGAAACATAAATACAACGTGCATGTGGAGCTCAAGTGCCCCATTTGCGGGAAACAGATCACGCGTACAAACTTCAAGCGGCACGTGGAGCGTCACGATGACCCCTTGTCGATTTGCGAGTTGTGTGGGGCGACGTGTAAACGACAGGATTTGCGGGTGCACATGTATAGGCACCGAAAAAACGCCTTTAAGTGTCAGTTCTGTAGTAAAATTTACAAGAACAAGGCGCATCAAATCCACCACGAAAAGAAGGAACATTTAGACGTCGCCGACTTCATCTGTGATACCTGCGGGAAGAAGTTCTACAAAGCCTGTGATCTAAAACGACACGTTGATAGCACACACTTAAAACTGCGCCCCCACATCTGCGAATTTTGTAATGTCGGATTTTCGAGCAGATTCGCGCTGAGAACACACCGAAGACAGCACACGAACGAGACACCTTTCAAATGTGATGTCTGTGGGGACGGATTCCGGCAGAAAGTGTCTCTGAAGGCTCATCTAAAATCCAAACATAAAGTCGAGGAAGAACTGACGTGTGAATGTGGGAAATGTGGGAAGAGATTCGCGTCGAAAGCGGCGCTGATAGCCCACAGTCGGGTGCATTAG
- Protein Sequence
- MTDCTAKIQLCRLCLAKTTTFFSLLEDENSSMLEALTALRISPTDGISTVMCLKCRLNLKLAFSIQQSMISAEQRFREKDMITPHDVVEAECDAFNEEVQTPIDYTCDICGKEKFTKENLRKHKYNVHVELKCPICGKQITRTNFKRHVERHDDPLSICELCGATCKRQDLRVHMYRHRKNAFKCQFCSKIYKNKAHQIHHEKKEHLDVADFICDTCGKKFYKACDLKRHVDSTHLKLRPHICEFCNVGFSSRFALRTHRRQHTNETPFKCDVCGDGFRQKVSLKAHLKSKHKVEEELTCECGKCGKRFASKAALIAHSRVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415406;
- 90% Identity
- -
- 80% Identity
- -