Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: wdn
Assembly: GCA_029298725.1
Location: CM055514.1:5212173-5214242[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0084 0.66 10.9 0.3 2 21 176 195 175 196 0.94

2 10 3.6 2.8e+02 2.6 6.6 1 19 204 222 204 226 0.90

3 10 7.5e-05 0.0059 17.3 0.7 1 23 232 255 232 255 0.93

4 10 1.7e-07 1.3e-05 25.7 0.3 1 23 261 283 261 283 0.98

5 10 0.00011 0.009 16.8 0.2 1 23 291 313 291 313 0.98

6 10 8.3e-07 6.6e-05 23.5 1.0 1 23 319 341 319 341 0.97

7 10 1.8e-05 0.0014 19.3 1.8 3 23 349 369 348 369 0.96

8 10 0.00076 0.06 14.2 3.1 1 23 375 397 375 397 0.97

9 10 0.0012 0.097 13.5 2.0 1 23 403 425 403 425 0.98

10 10 1.7e-05 0.0014 19.3 3.5 1 23 431 454 431 454 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0084	0.66	10.9	0.3	2	21	176	195	175	196	0.94
2	10	3.6	2.8e+02	2.6	6.6	1	19	204	222	204	226	0.90
3	10	7.5e-05	0.0059	17.3	0.7	1	23	232	255	232	255	0.93
4	10	1.7e-07	1.3e-05	25.7	0.3	1	23	261	283	261	283	0.98
5	10	0.00011	0.009	16.8	0.2	1	23	291	313	291	313	0.98
6	10	8.3e-07	6.6e-05	23.5	1.0	1	23	319	341	319	341	0.97
7	10	1.8e-05	0.0014	19.3	1.8	3	23	349	369	348	369	0.96
8	10	0.00076	0.06	14.2	3.1	1	23	375	397	375	397	0.97
9	10	0.0012	0.097	13.5	2.0	1	23	403	425	403	425	0.98
10	10	1.7e-05	0.0014	19.3	3.5	1	23	431	454	431	454	0.98

Sequence Information

Coding Sequence: ATGAGACACCTTGAAGACACTAACGCTGTTTATACAAGTTCTCTTGAACCCTCACCGGAATATTTGGAGGAATTCTTGGAAATTAAAGAGGACATACCTAAAGAAATCTTTGAAGAATGTGACAATTTTCTAAACAGTGAAAGTGAGAACAAATTGCATTTGGAACTACATGAAGACAGTGATACTGACGATGACATACTAAACAAGAGCCCAAAACGCAGAAACAGAAGGAAATTATTAGTCCCGCAACGAGCGATACAAATTGATAGCCAAAATGCAGCCACATGTCACAGTTCAGATTCATCACAAGATCATTCTGAAAACTCACACATTGAGGACCCTGTCGATAAAATTCTCGCCACGGAAACTGCGAAGAATATTGTGATAtcagaaaacgacgatttactTTCCAGTATTAATGAAGACGACATTTTTAAAGACTTGCAAGAGGAAGCTGATGGAGAGAAACTAGACGACGAGATTCTAGACAATGTGAAGGAAGAATGGAGGGCCCACTGGGGGGTAAAATGCAACATGTGTGAACAAGTTTTTCCTTATAAAACGGAATTTGATAAGCACTATCAAGATAATTATGGCTTGGTACCAGTGTACACTTGCACTTTCTGTAATAAGACTGCTGAGAAGTATTCAACTTTTAGATCTCATTGTTATAGACATATTACTGAAGGCCGCTACAAGTGCCAAGAATGTCCAAAAGGGTTTAGTTTGCAGAGTATGTTGCACGTCCACGTTTTGGCAAAACATACAAAAGCGAAACCGTTTATGTGTGACGAGTGTGGGAAGAGCTTCGTAACAAAACCGGGACTTAAGATACATCTTAGGAAGCACAAGACTGAACTCAAAGAAGATTATCCATGTGTGGAATGTGGGAAAATCTTGCATACAAGAGGCGGCTTAACGTCACACATGAACGTGCACCGTTTAGGCCGAAGATTTATGTGCGACGTATGTGGCAAAACATTCACCCAAAAAGTGAACATGCAACAACATGTTAAGCAACACACTGGTGATAAACCACACGGTTGTGATAAATGTGGGAAAACATTTGCAGAAAAATCTCACTTGGCCAGACATTACAGCTTTCATAGTGATCAACGACCATTTAAATGTGATGTTTGTCAAAAGATGTACAAGACTGAACGCTGTTTGAAAGTTCATAGCTTAGTCCATGCGGCAGCCCGCCCTTTTGTTTGCACTTATTGCAGCAAAGGGTTTTTAAGTAGTACAAAATTGAAgCAACATTATAACATCCACACAGGCGAGCGGCCATACAAGTGTAAATACTGCGAAAGAACCTTCACTAACTACCCCAACTGGTTAAAACACACGAGACGGCGCCACAAAGTTGATCACAAAACTGGCGAGCATTTGGAGCCGAAAGTACCGAAAGAAGAAGTGCAATCAGTCGCTGATACTGCCACTGATTCTACAGAGCATTTGGTTGCTGATATTACTCTCagtaaaaatgaagaacttctTTTGCAGCAAGGACTTTTGAACTTTCCTCTCGCTGATGACAAGTTTGTGATTCCTCAACAAATCGAGTTTTTGACTGGGACTTCTAGTACTAGTAGTGTGGGGATGATTGTTCCGTACTTCCAAACTTCATTACCAAGCCAAGCTTTGATGACTAACTCTAACAATGTTATGACGATGCAGTTTAGTGATTTGGTACACACGCAGTATCTGCAGCAGTCACTTATGTGA
Protein Sequence: MRHLEDTNAVYTSSLEPSPEYLEEFLEIKEDIPKEIFEECDNFLNSESENKLHLELHEDSDTDDDILNKSPKRRNRRKLLVPQRAIQIDSQNAATCHSSDSSQDHSENSHIEDPVDKILATETAKNIVISENDDLLSSINEDDIFKDLQEEADGEKLDDEILDNVKEEWRAHWGVKCNMCEQVFPYKTEFDKHYQDNYGLVPVYTCTFCNKTAEKYSTFRSHCYRHITEGRYKCQECPKGFSLQSMLHVHVLAKHTKAKPFMCDECGKSFVTKPGLKIHLRKHKTELKEDYPCVECGKILHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKQHTGDKPHGCDKCGKTFAEKSHLARHYSFHSDQRPFKCDVCQKMYKTERCLKVHSLVHAAARPFVCTYCSKGFLSSTKLKQHYNIHTGERPYKCKYCERTFTNYPNWLKHTRRRHKVDHKTGEHLEPKVPKEEVQSVADTATDSTEHLVADITLSKNEELLLQQGLLNFPLADDKFVIPQQIEFLTGTSSTSSVGMIVPYFQTSLPSQALMTNSNNVMTMQFSDLVHTQYLQQSLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568295;
90% Identity: iTF_00415356;
80% Identity: -