Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055510.1:5776342-5778781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.37 29 5.7 0.9 1 20 14 33 14 35 0.94

2 15 2.9e-06 0.00023 21.8 3.4 1 20 59 78 59 83 0.93

3 15 6.9e-05 0.0054 17.5 2.7 1 23 101 123 101 123 0.98

4 15 0.004 0.31 11.9 3.5 2 23 129 151 129 151 0.94

5 15 0.0035 0.28 12.1 3.0 1 23 157 180 157 180 0.96

6 15 0.0052 0.41 11.5 0.2 2 23 187 209 186 209 0.94

7 15 1e-06 8.1e-05 23.2 0.2 1 23 214 237 214 237 0.97

8 15 0.093 7.4 7.6 1.6 3 23 249 266 247 266 0.94

9 15 0.0048 0.38 11.7 0.2 2 23 273 295 272 295 0.95

10 15 0.00084 0.067 14.0 4.9 1 23 301 324 301 324 0.97

11 15 9.2e-06 0.00073 20.2 0.1 1 23 338 360 338 360 0.97

12 15 7.7 6.1e+02 1.6 1.2 1 13 366 378 366 380 0.83

13 15 0.0041 0.32 11.9 0.2 2 23 390 411 389 411 0.95

14 15 0.00053 0.042 14.7 0.1 2 23 449 470 448 470 0.95

15 15 0.35 28 5.8 0.2 3 23 494 513 493 513 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.37	29	5.7	0.9	1	20	14	33	14	35	0.94
2	15	2.9e-06	0.00023	21.8	3.4	1	20	59	78	59	83	0.93
3	15	6.9e-05	0.0054	17.5	2.7	1	23	101	123	101	123	0.98
4	15	0.004	0.31	11.9	3.5	2	23	129	151	129	151	0.94
5	15	0.0035	0.28	12.1	3.0	1	23	157	180	157	180	0.96
6	15	0.0052	0.41	11.5	0.2	2	23	187	209	186	209	0.94
7	15	1e-06	8.1e-05	23.2	0.2	1	23	214	237	214	237	0.97
8	15	0.093	7.4	7.6	1.6	3	23	249	266	247	266	0.94
9	15	0.0048	0.38	11.7	0.2	2	23	273	295	272	295	0.95
10	15	0.00084	0.067	14.0	4.9	1	23	301	324	301	324	0.97
11	15	9.2e-06	0.00073	20.2	0.1	1	23	338	360	338	360	0.97
12	15	7.7	6.1e+02	1.6	1.2	1	13	366	378	366	380	0.83
13	15	0.0041	0.32	11.9	0.2	2	23	390	411	389	411	0.95
14	15	0.00053	0.042	14.7	0.1	2	23	449	470	448	470	0.95
15	15	0.35	28	5.8	0.2	3	23	494	513	493	513	0.94

Sequence Information

Coding Sequence: ATGGACTGTAAATTAATCCGCAGACAAGGAGTTTTTCTTTTCGAGTGCAGATCGTGTTTCCAAACTTACGTAACATATGACGAATTCCTAGCTCATACACACTGGGATTTGATAAAAACTGAAGATCTTCCTGAAAACCAAGCGTATTTTAATCCTATCACCGGCCAAAAGGAATACAAATGCAACATCTGCAATAAAGTGTTCAAGACAAAAGGCTACTTAAATCGTCACAAAGACCATATGAGACACACAATCAAAACTGAATTTGTTACTGAAACTGTTCCCGTTCAAGACGAAAAATACACATGCGATCTCTGCTCGAGCGAATTTAAAACAAAaggaaatttaaagaaacacaGGACTCGTCATTTTCCTCCACAGGAGCAGTGTCCTCATTGCGAAAAGCGTTTCCACGAAGAATACACTTTAAAACAACACGTATTTTCAGTACATCGACAACAAAAGGATTTTTCGTGTCCTCACTGTAGTTACGCAGCCTCAAACAAGCACACGTTGCGGCTACACGTTATACGAAAACACACCAAAAATTATCCTTTAATGTGTGATATTTGCGGGAAAGGCTACACGAAAAAGTACATCCTAGACGTGCACCGGAAGTCGGTTCACGAAGGCGTCCACTTCGTTTGCGAGGACTGCGGGAAAGTCTTCAAATACATGGCTGGATTGACGAATCATCGTCGGATACTCCACGAAAAGACCGCAAAAAAGAAAGAACGCAAAATGTGCCCAGTCTGTggaatcaaatttttacatctcAACAGTCACATGAAAGTCCACGAAGGAGAAAAAAATGTAGAGTGTGAGCTATGTCCGAAACGATTTTGGAAAAAGGGGGAACTACGCATACATGTTTTACGGAAACACCAGTCGGAGAGACCGCACAAGTGCGATTTTTGTGGACAGTGTTTTATATTGAAACAGGAATTGAAGGTTCATGTTAAAAGGCGACATACAGGCGAAAAACAGATTGAGAATGAGGCGGAACGACCGTTTGCTTGTGAGATTTGTGGAAAACGGTTTAAGATGCAGGCTCCGTTAGTTGACCATCTGAGAAAACACGCTGGAGAAAAAGCTTACAGTTGCGATATTTGTCAAGAGAAgtCGCCACGTCAGTGCGAGAGTCCTACTCATCGTCAGATTCAGATCCCTTGTAATCTGTGCGCTCAAACATTTTCCACTGAAAGTCAGTATTACGAACACAAAATCATACATGTTAAAGAGAGGAATGAAACTACTCAATACTATCCACCCAAAGTAGTACAAACCAAAGAAATAGCGAAGTGCTCAAATCCAATTAAATCGACTCCTGCGCCTTGTCGAATACCTTGTAATCTGTGTCCAGAGACTTTTTCTAGTGAAAGTGAGTACTACacgcataaaattatacatgTTAAGGAAAAAAATTGGATTACTGCATTGGAAAGATTAGAACATTCTGGCGATAAACTTAAATCTGCGTGTGATGTTTGTGGAAAGATTTTACCGATATCTAAACTTAGTAAACATAAGAGATTACATACCTAA
Protein Sequence: MDCKLIRRQGVFLFECRSCFQTYVTYDEFLAHTHWDLIKTEDLPENQAYFNPITGQKEYKCNICNKVFKTKGYLNRHKDHMRHTIKTEFVTETVPVQDEKYTCDLCSSEFKTKGNLKKHRTRHFPPQEQCPHCEKRFHEEYTLKQHVFSVHRQQKDFSCPHCSYAASNKHTLRLHVIRKHTKNYPLMCDICGKGYTKKYILDVHRKSVHEGVHFVCEDCGKVFKYMAGLTNHRRILHEKTAKKKERKMCPVCGIKFLHLNSHMKVHEGEKNVECELCPKRFWKKGELRIHVLRKHQSERPHKCDFCGQCFILKQELKVHVKRRHTGEKQIENEAERPFACEICGKRFKMQAPLVDHLRKHAGEKAYSCDICQEKSPRQCESPTHRQIQIPCNLCAQTFSTESQYYEHKIIHVKERNETTQYYPPKVVQTKEIAKCSNPIKSTPAPCRIPCNLCPETFSSESEYYTHKIIHVKEKNWITALERLEHSGDKLKSACDVCGKILPISKLSKHKRLHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -