Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: salm
Assembly: GCA_029298725.1
Location: CM055513.1:16933291-16938547[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.8 3e+02 2.5 0.2 3 19 2 18 1 20 0.91

2 10 5e-06 0.0004 21.0 0.9 1 23 318 340 318 340 0.98

3 10 6.8e-06 0.00054 20.6 1.9 1 23 346 368 346 368 0.98

4 10 0.063 4.9 8.1 3.8 2 23 679 700 678 700 0.98

5 10 4.3e-08 3.4e-06 27.5 0.6 1 23 706 728 706 728 0.97

6 10 6e-05 0.0048 17.6 2.6 1 23 738 760 738 760 0.98

7 10 0.0091 0.72 10.8 2.4 2 23 1023 1044 1022 1044 0.97

8 10 0.079 6.2 7.8 1.3 1 14 1050 1063 1050 1064 0.93

9 10 1.4e-06 0.00011 22.8 4.0 3 23 1204 1224 1202 1224 0.96

10 10 2e-07 1.6e-05 25.4 0.9 1 23 1230 1252 1230 1252 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.8	3e+02	2.5	0.2	3	19	2	18	1	20	0.91
2	10	5e-06	0.0004	21.0	0.9	1	23	318	340	318	340	0.98
3	10	6.8e-06	0.00054	20.6	1.9	1	23	346	368	346	368	0.98
4	10	0.063	4.9	8.1	3.8	2	23	679	700	678	700	0.98
5	10	4.3e-08	3.4e-06	27.5	0.6	1	23	706	728	706	728	0.97
6	10	6e-05	0.0048	17.6	2.6	1	23	738	760	738	760	0.98
7	10	0.0091	0.72	10.8	2.4	2	23	1023	1044	1022	1044	0.97
8	10	0.079	6.2	7.8	1.3	1	14	1050	1063	1050	1064	0.93
9	10	1.4e-06	0.00011	22.8	4.0	3	23	1204	1224	1202	1224	0.96
10	10	2e-07	1.6e-05	25.4	0.9	1	23	1230	1252	1230	1252	0.98

Sequence Information

Coding Sequence: ATGTGTCAACGATGTCAAGAACAGTTCACCGACGTACAAGAATATTTAACGCACAAAGCTGAATGCGAGAAAAAAGCTATCAAACACGACGACCCTGCCCATTCCGATCCCGAAGACATGGTGGTGTCTGAAGAAGACGATGAAGACGAAGAAACTGGTGGAAAGCGTCTAGAAAGAATGCGACGGCATCGACAAGACGCGGCTAATAACaacagtgttgaagaaaattccCCCGATGAAAGCAGTGCGAGGCTCTCTTTTCCCTTTCCGATACCGTCAGCACCTGGCCATGTCACACTGGAAGCTCTGCAAAACACGAAAGTAGCCGTGGCGCAATTCGCTGCAACTGCTATGGCGAATAATTCGGACAATGAAGCGGCGCTTCAAGAGCTCGCAGTGTTGCAATCAACGTTGTTCACTTTGCAACACCAACAAGTTTTACAATTGCAACTGATAAATCAGTTGCAGCAGCAACTTCAGATTGATAGATCGAAAGCTGCGAGTCCTGTGTCGCCGCCACCGTCTGAAAATGACGGGGAAACTGCTCCGGCGGAAGCTTCGCCGCCTCCTCAAAATCTTCCAGTGTCGCGAGAGGCCACTCCAGCGCCCATGGTGCAACCACCGCTTAGTCAATCCACCCCACAGCCTCCACCAGAAAACTCTGAGAATCAAATGACTGAAATCAATGTTCCTTGCTCTCTACCTCTGCAGTCTCAACACTGTTCCATATCGTCAGCGTTCGCTTCAACCATTATCACCCACAATAACGAGCCACCTTCTCTAGACGAACCAAATACTTTAGAAATGTTGCAAAAGAGAGCTCAAGAAGTGTTAGACAACGCCAGTCAGGGGTTGTTAGCGACGAACTTGGCTGACGAATTAGCGTTTAGAAAAAGTAAGGGCTCGTTATCGCCGTACGATTCGAAGGGACGGAATGAACCTTTCTTCAAGCACCGTTGTAGATACTGTGGTAAAGTTTTTGGGTCTGATTCGGCTTTACAAATACATATCCGTTCTCACACCGGGGAACGCCCTTATAAGTGCAATGTTTGTGGTAGTCGGTTTACCACGAAAGGTAATTTGAAAGTACATTTTCAAAGACATAGTGCAAAGTTTCCTCATATCAAAATGAATCCAAATCCGGTTCCGGAACATTTGGATAAATATCATCCGCCGCTCTTGGCGCAACTAGGCCAACAACCCTCGTTGTCACCTGGTGGTCCACCGCATCCTCCACATATGGGTTTCCCAGGAGGTCACCATTTTCCTCCGACTTCTCTGCCGTTGTATAGGCCACATGGACCACCGCCTCCGGACTTGTTAAATAATCGGCTACAACCATCCCCTCACCGACCGCAAGACCCGTCGCAGAGGCTTTTTCCGCCACATGCAATGTTTATGAAGCGGGAAGAACAAGAAGCCCCGGAAAATTTAAGCAAACCTCCGAGATCTCCAAACCAACCCCAAGAAAGTCAGTGCAAGACCGAAATATCCGACGAAAAACGGGAATACGGCGATGACTTACAGACAAATGTTCCTCAGATAACACCAAAACAAGAACCAAATGAAGAGAACGACGGTGATCACGAACCTGAGAGATTCTCTTCGCCGGCACCTTACGATGAATGCAGTATTGACAGCAGTAAGTACAGTAACGACGACATGTTGGGAACGAGGAGTCCTGGCGCAGACCATTCAGAAAACATGCAAGATGAACCAGAGAATCTCTCCAATAAAAGTAGTTCGATAACAGTTCCTTTGAGTATTTCCACTGGTCAAAGACTTCCCGCGAATTTTGCGTTTGCTCAAGTCAGTTCACCGCCCAGCAGTACGTCATCGGGGAGTTTAGGGCCATTTCCAGGAACTGCATTGGTCGATCCAGCTAAAGATCCCTGTATCTACTCGAATTTATTGCCGAGACCCGGAAGCAACGACAACTCATGGGAAAGTCTGATTGAAGTAACAAAAACTTCGGAAACTAGCAAACTTCAACAGCTAGTTGACAATATCGAACATAAACTTTCAGATCCGAATCAGTGTGTGATATGTCATCGAGTGTTGTCGTGCAAAAGCGCGTTGCAGATGCATTATCGAACTCACACCGGAGAGCGACCGTTTAAATGTAAGATTTGTGGTCGCGCTTTTACCACCAAAGGCAACCTTAAAACACACATGGGCGTGCATCGAGCAAAACCTCCAATGCGTGTCCTACATCAGTGTCCGGTCTGTCACAAAAAATTCACGAACGCTTTAGTTCTGCAGCAACATATCCGCTTACACACAGGTGAACCCACTGATCTCACTCCCGAACAAATACAAGCTGCAGAAGTTAAAGATTTTCCTTCTCCTGGAGGTTTCCCGTCGCTCcataattccattaatccatTCCTAGGGCAAGGATTTGCCGTTCCTGGATTGTCTCCCTTGGGACATGCAGGACTTATGAGCCAAAAATACGAGAAATTCGACAAAGACGAACACGAATCCATGGATGATGAcgatgatgacgatgacgacATAAGCAATTCTGAAAATCAAAATCCCCCGTTTGCTTCATCACCGTCGGATACCCAAGGCGTACCCACCACTGCAGCTTCGCGCTTGTCTGGAAGTGGACTCAGCTGTTCAGCTGAAGATTTGTGCTCAAACCGAACAGTGGCGTCCGCTTCCCCTGTACAAAACGGAGAAAAGTCACCCTCTCAGTCTGGAGTTACTAGTCCAGGAAGTTCGGATATTCGCTCGTCCCCGAATCGTGTCACATCAACTCCCGTCCAGGTTCCACGTCCACCCTCTTCGCAGCAAGCTGGCAGCCCGACTCCTTCCGAGTGCAATTCTCTAGGTGCTCTAGACTTAACCCCCCGAACAAATCAGCCCTTAATAACGAGTCCCGGTCCCAGTCCGGGACCTCCACCGTCTTTGTTTTCCACCTTTGGATTGATACCACCAGGTCAAGGTTCCACACCTTTAATGTCGTCGGCACTGTCTTCGTTGACGTCGTCCGTTCTGACTTCAACAGCATTCAGTCCATTGCGTTTAGCTGTTGGCCCACCAGGACGTGGGAACACCACCTGTAACTTATGTTTCAAAACTTTCGCTTGTAATTCAGCGTTGGAAATTCATTACAGGAGTCACACTAAAGAGCGTCCTTTTAAATGTAGTGTCTGTGACAGGGGCTTCTCGACGAAGGACAGATGTGTGTGCAGAGAGAGGCGTATCCAGGATGAAGATGAGCCTCGGAGAGCATGTAAACGGAAGCCTGCTCTTCGCAAGACAATACCATCGGTATTTCCGCTACCGATGAGCCCTGGATACGCCTCAAACTGGATGCATATCGCGGGTAATATGAAGCAACACATGTTAACACATAAAATAAGGGACATGCCACAGCATATGTTTGAAAATAAACCTCCTGTAAGCGGAGATGAATCTTCGCAAACCCAAAATTTACCGTCAAGGGATAGTCAAGTTAGCGAAAATGAGCAATCTAATCCACCCACACTACCTCCTGTGAGTGAACAAAGTAAAGAGCAACCGGTTAAGAGGGAACCCACTGAGACTGAACTGCCCTTGCCAAAGCGTCCACCCAGCTTACAGGCCAGTAAGCACTTGTGCCACGTATGCAATAAGAACTTCTCGTCCAGCTCGGCCTTGCAGATACACATGCGTACGCACACGGGCGATAAGCCGTTCAGATGCACCGTGTGTCAGAAGGCCTTCACCACCAAAGGAAACCTCAAGGTACATATGGGAACCCATATGTGGAGCAACGGAGCATCTCGACGCGGTCGTCGCATGTCTCTAGATCTTCCTCCCATCCCCATGACACCCAAGGATTCCGAATTTCTGCAACGGAGACCAGACCTCTTTTATCCGTACCTACCGGCTCCATTCCTTAATGGCATGCAGCAAAAGCTGAATGAGATGTCAGTTGTACAGAATAATCAAAACGGAATGAGTGGAGCAGGCAAGTACAGTGGTCTGTTGGGTTTCGGCTACCCTCCACCAGAGGCGCTGCGGTCGCAGGGTGGTTCACCGGAGCGGCCCGAGAGGCCACCAAGTCGCGAGCCGGAATCTCGGAGTTTATGGGATCTTCATTTCGAACGGAAATCGGCCCCCGAAACCCCACGAGAAGAGCTACTGCCAGCAAGCAGAGAGGGTTTAGCTGCCTGA
Protein Sequence: MCQRCQEQFTDVQEYLTHKAECEKKAIKHDDPAHSDPEDMVVSEEDDEDEETGGKRLERMRRHRQDAANNNSVEENSPDESSARLSFPFPIPSAPGHVTLEALQNTKVAVAQFAATAMANNSDNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLQIDRSKAASPVSPPPSENDGETAPAEASPPPQNLPVSREATPAPMVQPPLSQSTPQPPPENSENQMTEINVPCSLPLQSQHCSISSAFASTIITHNNEPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSLSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQPSLSPGGPPHPPHMGFPGGHHFPPTSLPLYRPHGPPPPDLLNNRLQPSPHRPQDPSQRLFPPHAMFMKREEQEAPENLSKPPRSPNQPQESQCKTEISDEKREYGDDLQTNVPQITPKQEPNEENDGDHEPERFSSPAPYDECSIDSSKYSNDDMLGTRSPGADHSENMQDEPENLSNKSSSITVPLSISTGQRLPANFAFAQVSSPPSSTSSGSLGPFPGTALVDPAKDPCIYSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPSLHNSINPFLGQGFAVPGLSPLGHAGLMSQKYEKFDKDEHESMDDDDDDDDDISNSENQNPPFASSPSDTQGVPTTAASRLSGSGLSCSAEDLCSNRTVASASPVQNGEKSPSQSGVTSPGSSDIRSSPNRVTSTPVQVPRPPSSQQAGSPTPSECNSLGALDLTPRTNQPLITSPGPSPGPPPSLFSTFGLIPPGQGSTPLMSSALSSLTSSVLTSTAFSPLRLAVGPPGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCSVCDRGFSTKDRCVCRERRIQDEDEPRRACKRKPALRKTIPSVFPLPMSPGYASNWMHIAGNMKQHMLTHKIRDMPQHMFENKPPVSGDESSQTQNLPSRDSQVSENEQSNPPTLPPVSEQSKEQPVKREPTETELPLPKRPPSLQASKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEMSVVQNNQNGMSGAGKYSGLLGFGYPPPEALRSQGGSPERPERPPSREPESRSLWDLHFERKSAPETPREELLPASREGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01481150;
90% Identity: iTF_01410203;
80% Identity: -