Gcor003023.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055510.1:7852353-7862815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00014 0.011 16.5 2.9 1 21 218 238 218 239 0.96 2 15 0.0017 0.13 13.1 3.2 3 23 249 270 248 270 0.96 3 15 1.2e-05 0.00098 19.8 2.0 1 21 302 322 302 323 0.94 4 15 1.8e-05 0.0014 19.3 5.7 1 23 331 354 331 354 0.98 5 15 0.00015 0.012 16.4 1.0 1 21 398 418 398 419 0.96 6 15 0.052 4.1 8.4 1.8 1 20 427 446 427 448 0.94 7 15 0.0011 0.09 13.6 3.6 1 21 459 479 459 480 0.96 8 15 0.18 14 6.7 4.2 1 21 488 508 488 509 0.95 9 15 0.0022 0.17 12.7 2.4 1 21 543 563 543 564 0.94 10 15 0.013 1 10.3 2.3 1 23 572 595 572 595 0.93 11 15 1e-05 0.00083 20.0 1.0 1 22 604 625 604 625 0.96 12 15 0.87 69 4.5 5.8 1 21 641 661 633 662 0.84 13 15 0.00028 0.022 15.5 0.1 1 23 670 695 670 695 0.96 14 15 0.00013 0.01 16.6 1.7 2 21 704 723 703 724 0.95 15 15 1.5e-06 0.00012 22.7 1.6 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGTGTGCAGCGACTGTGGCAAGACTTATCAACATCGTGCGAACTTGTACTAAGTCGATTCCAACAAaaccatttattaaaattttggcgGTGGAAGATTTGAAGAATGATACAGTTGTAGCCAATATAAAAAAGGAATTAAGTCCGCATATTTTATTTGGAAAGAAAGTGAAGAAGGTCAGCGAAGAAGTGGATGTGAAACAGGAGAGTGTTGATGACATTCCGAAGAAAAGAGGACCCAAAGTGCAGAAGTTGGCGATGGAGAGAATGAAACGCTTTTTGGCAATGTCTCGAGAGAATTTACCAGAACCAGGGAAGAAGAAACTAGCTTGTGAAAAAGATATCGCTTTATTGACATTTCCTGTGGATACACTCCGGTGTCAAAACTGTGGAGTTTTATATGAAAGAGTGAAACGCGTGGAGCACCTCAATGTTTGCCAGAAGAAACCACAGCGAGTGAAATACGGATGCACTTCCTGTCCTTTCACCGATGCTGATATTCAAGAACTCCGAGTTAGTGTTAGTCTGCATGGAGTACCTGTTGGGCCTGTAGATTATTACAGCTCAGATCAGGAAAATAAGCAAGTGAAAAAGTCGAAAAAGTCCTCCTTACCGTGGGATAACTTGGACAATTTTGCCTTGAGTGAACTATTCATGTGTACGAAATGCACCAAAACGTATCGTTTGAAACATTCGCTTACTCGCCACATCCGACTCGAATGCGGCAAAGAGCCGATGAACGCTTGTCGCTTTTGTCCTCGCCGTTTTAAACACAGATACGACTTGAACGTGCATGAGAAATCCAAACATTTCAACATCGACGTTAAGAAAAAGAAAGCAGACAATAGCGAGACCGCTATGAAAACTTCGCCAAAAGTTAGCTTTATTTTTCTTCTAGGTTACCACTTCTGTCCTCAATGCGACAAGTCTTACCGCAGAACCGACTCTCTTCGTCGACATTTGCGCAACGAGTGCAATAATAAGGGGCGCTTCAAGTGTCCAATGTGCGAACGCACCTTCAAACACCGGTTTAACATGAGAAATCATCTCAGAAAACAACACTCGGTGGCGTTTTTTGTGCCGGATGCAACCGCTGGTACAAGAACCAAACCAGTTTGGCCACCCATCGTTCTTTGGACTGTGGGAAAGGCCACCGCTTCCATTGCACCAAGTGCTCAGCGAAAGCCGGCGTTTGTTTGTCCGAACTGTGGTCGCAACTATAAGTACCAAACATCTCTATACAACCACCAGAAGTACGAGTGCGGAAAGACGAAATCTTTTATGTGTACGATGTGTAGCAAGCAGTTTTGGCACAAACAATCTCTTAAAAACCACGTGCTTTTCAAGAGATATTATGTGGAACACGAAGGAATGTATTATTGTAACAAATGTTTGAAAAGTTATAAGCACAAAGGAAACATCAGACGTCATCTCAAGTACGAATGTGGGAAGGAAGCCAAATTCCAATGCAGTATCTGTTCTTTCAGATGCAAACGCTTGGACTATCTCAAGTTTCATATGAAGAGCACAAAGTTCCAATCGGTTTTATTGTGTGACTTGCTTCAAATCGTACAGTGCACCAGAGAATTTACGACGGCACCAAAGGATCTGCAGTCACGGAGGAACTTTTATTGTAAGAGGTGCTTCAAATCCTATACTTTGAGAAGAAACTTACAGCGACACGAAAAGGTCGAATGTCAGAAGGAGAAGAAGTTCATTTGTGGGATCTGTCAGCACAGAACTTACTACAAGAGTGATCTTCGCGTGCATATTTTTAACAAGCATGGCGTACATTTGTTTAGACCGCGTTTCTATTGCGATCGGTGTGGCAAGTCATACACCATTAAAAATAACTTGAGGAGGCATCAAAGAGTAGAGTGTGGTCAAGAGAAGAAGCTCAGATGCCACGTGTGCACGATTTATCCTTGCATCAGATGCGATCGCAAATATAAACATAAAGCATCTCTCTACAATCACGTACGTTTTGAGTGTGGCAAAGAAAAGTCCTTCATATGCCCTATGTTGGACTGTCCCTACAAAACGAAACGAAAAGGAAGTCTTAAGTCCCACATCCTTATAGTTCATAAGGACTATTTTTttGCAGACATAGAGTGTACAAAGTGTTTGAAAACGTACAAACACAAAGGGAGTCTCCAGAGGCATCTGAGGTACGAATGTGGTAAAGGGGGATCTTTTTCTTGCCCTTATTGCGGTTACGTGTGCAAACAGAAGTATTCCTTAATCCGCCACGTTAAAGTGATTCACCCCGACAGTCTAAGCTCTTTTATGTTTTTGTACAAGTCGATGAAATAA
- Protein Sequence
- MCAATVARLINIVRTCTKSIPTKPFIKILAVEDLKNDTVVANIKKELSPHILFGKKVKKVSEEVDVKQESVDDIPKKRGPKVQKLAMERMKRFLAMSRENLPEPGKKKLACEKDIALLTFPVDTLRCQNCGVLYERVKRVEHLNVCQKKPQRVKYGCTSCPFTDADIQELRVSVSLHGVPVGPVDYYSSDQENKQVKKSKKSSLPWDNLDNFALSELFMCTKCTKTYRLKHSLTRHIRLECGKEPMNACRFCPRRFKHRYDLNVHEKSKHFNIDVKKKKADNSETAMKTSPKVSFIFLLGYHFCPQCDKSYRRTDSLRRHLRNECNNKGRFKCPMCERTFKHRFNMRNHLRKQHSVAFFVPDATAGTRTKPVWPPIVLWTVGKATASIAPSAQRKPAFVCPNCGRNYKYQTSLYNHQKYECGKTKSFMCTMCSKQFWHKQSLKNHVLFKRYYVEHEGMYYCNKCLKSYKHKGNIRRHLKYECGKEAKFQCSICSFRCKRLDYLKFHMKSTKFQSVLLCDLLQIVQCTREFTTAPKDLQSRRNFYCKRCFKSYTLRRNLQRHEKVECQKEKKFICGICQHRTYYKSDLRVHIFNKHGVHLFRPRFYCDRCGKSYTIKNNLRRHQRVECGQEKKLRCHVCTIYPCIRCDRKYKHKASLYNHVRFECGKEKSFICPMLDCPYKTKRKGSLKSHILIVHKDYFFADIECTKCLKTYKHKGSLQRHLRYECGKGGSFSCPYCGYVCKQKYSLIRHVKVIHPDSLSSFMFLYKSMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -