Gcor002145.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- ZBTB41
- Assembly
- GCA_029298725.1
- Location
- CM055509.1:33187717-33190493[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.37 29 5.7 2.3 2 23 38 59 37 59 0.97 2 18 0.33 26 5.9 3.0 2 23 97 120 96 120 0.95 3 18 0.00042 0.033 15.0 0.3 1 23 126 148 126 148 0.97 4 18 2e-05 0.0016 19.1 0.9 2 23 153 174 152 174 0.96 5 18 0.015 1.2 10.1 3.9 1 23 180 202 180 202 0.94 6 18 0.00095 0.075 13.9 0.9 1 23 208 230 208 230 0.99 7 18 0.0018 0.15 13.0 1.3 1 23 236 259 236 259 0.95 8 18 0.085 6.8 7.7 0.0 2 20 261 279 260 283 0.93 9 18 0.00066 0.052 14.4 1.7 3 23 302 323 301 323 0.96 10 18 6.4e-05 0.005 17.6 1.0 2 23 342 364 341 364 0.92 11 18 0.00014 0.011 16.5 1.8 1 23 382 405 382 405 0.91 12 18 1.5e-05 0.0012 19.5 5.5 1 23 434 456 434 456 0.97 13 18 0.00014 0.011 16.5 0.6 1 23 462 485 462 485 0.93 14 18 0.0013 0.11 13.4 0.4 1 23 491 513 491 513 0.96 15 18 2.5e-05 0.002 18.9 2.0 1 23 519 541 519 541 0.96 16 18 1.1e-05 0.0009 19.9 0.6 1 19 547 565 547 566 0.97 17 18 0.00056 0.044 14.6 6.4 1 23 575 597 575 597 0.97 18 18 0.00083 0.066 14.1 1.6 2 23 604 625 603 625 0.96
Sequence Information
- Coding Sequence
- ATGTTAAGTTCTCATGGATTAGCCGCCGCTGAAGGAAATATAGTGGCCTTATTCAACCACATCAAAAAGGAGCCGACAGATCCACAACCAAAACAGTTAATGGCGCCCAACCAGTGCGAAATTTGCGAAAAACTCCTCAGTTGCCGCTCCAACTACCTCAGCCACGTTAAAACCCACGTGAGCGACAACTACTGCCGCCTCTGTTGCAACAGCTACAACACCAAATTCAAACTTAACAGCCACTCCACCTCCCACAAAGACGGTAAAGATGCTCCCCAGACATTCGTGCAGTGCGACTTCGAAGACTGTCTCCTCCAGTTCCCATCGAAGTTGCAACTCCACCACCATAAAAACACTCACTTTAATGTGACCACGTTCCAGTGCGAAATCTGCGGGAGGCAGTTTTGGAAGAAGTCCGCGTTGGAGAGCCACGGACTCAAACACGAAAAGAAAATTAGCTGTAAAGTCTGCGGGAAGGTGTTGTCTAGTAAGAAGACTTTAAGGGACCATCGGAGGTTGCACACAGGGGAAAAACCCTACAAATGCCGACACTGTGACGAGGTCTTCCGGTGTCAGAGTGGATTGAAGTACCATGAAGTCATCCACAGTGGCGTGAAGAAGTACCGATGCCAACTTTGCGGGATGAATTTCCTGAGGTCCAACTATTTGAAGGGACATTTGAGGATTCACGCTAAGGAAAAACCGTACCAGTGCCAACATTGTAACGAGAAATTCGGGCAAATGGGGGTGCTGAAAAGACACGAAGCGCGGATGCACATCAAATGCGGTCTTTGCGAGGCGGTAGTGGGGCGACGGGGAAACCTCAAAGAACACATGTGGAAGGTCCACGACACAAAATACAAACTGGTTATCGACGAAGACCTGAAACCGCTCCCAGGATTCTGCCCCATCTGTCAAACTACCATAAGTAGAGCCCGTGATCTCAGACGCCACATTTCAAGTTGCCATCCTGATCCGGCATCATCGAAAAAATTCGATGATGTTGCCAACCTTACCACAAAAACCTGCACTGAATGCAACACGTCTTTTGAAAATCGCACGCAACTGAAGAAACACGTTGAAGAAGTGCACAAGTTAAAGCAGACACGCCACAGAAGGAGGAAAAACGAGATTTCTCCTCAGTTTTACTGCGATGTTTGCGAAAAAGGCTTCACCAGGAAGCACGATATGGAGAAGCACCGCGTCCAAGTGCACTCTTTGGCCACTCAAAGCAAAGAAAACAAGAACTTGGAGGTGTTAACAAAGTGTCGAAATCGAGACTCGGATGGTAAACTCTTCTACTGTTGTGATTACTGCCAAAGACGCTTCACACAGAGTTATAATCTCATGCGGCATCGGACTATCCACACAGGAGTGAAAGAGTTCTTCTGCCACATCTGCGGAGTCGGTTTCCGGATGTCCAACGGCCTCAAACGACACATTGAAGCCTCTCACAACCGCGTGAAGAACTACAAGTGTGAAGTTTGCAACAAGAGCTTCAACGCAAAGGCTACAAGAGACGAGCACTTGAACATCCACACAGACAACAGACCTTTTGTTTGCGACGTCTGTGGGAAGAATTTTAAGCAACGGGCGTCGCTACATGTACATAAAATGTTCCATTCTGATACGTATCGATTCGAGTGTACAAACTGTGGGAAAAAATTTCGTAGGCAACAAGATTTGAAGGTGCACGGGTGGTTGCACACAGGCCACAGACCACATTCTTGCCACCAGTGTAAAGCGGCCTTTAGACTCAAGCATGATCTTAATAGACATTTACGGATTCACGAAAAGAGGGTGACGTGCGTCTGTGGGGTTTGCGAGGCGGTTTTCAGTCGGGAGCGGCACTTAAAACTACACGAAAAAATCCATGAGGGTGTTAAAGTGTTAGTGAAAACCGAACACAATGCGGAGGGGGGAGGGTGA
- Protein Sequence
- MLSSHGLAAAEGNIVALFNHIKKEPTDPQPKQLMAPNQCEICEKLLSCRSNYLSHVKTHVSDNYCRLCCNSYNTKFKLNSHSTSHKDGKDAPQTFVQCDFEDCLLQFPSKLQLHHHKNTHFNVTTFQCEICGRQFWKKSALESHGLKHEKKISCKVCGKVLSSKKTLRDHRRLHTGEKPYKCRHCDEVFRCQSGLKYHEVIHSGVKKYRCQLCGMNFLRSNYLKGHLRIHAKEKPYQCQHCNEKFGQMGVLKRHEARMHIKCGLCEAVVGRRGNLKEHMWKVHDTKYKLVIDEDLKPLPGFCPICQTTISRARDLRRHISSCHPDPASSKKFDDVANLTTKTCTECNTSFENRTQLKKHVEEVHKLKQTRHRRRKNEISPQFYCDVCEKGFTRKHDMEKHRVQVHSLATQSKENKNLEVLTKCRNRDSDGKLFYCCDYCQRRFTQSYNLMRHRTIHTGVKEFFCHICGVGFRMSNGLKRHIEASHNRVKNYKCEVCNKSFNAKATRDEHLNIHTDNRPFVCDVCGKNFKQRASLHVHKMFHSDTYRFECTNCGKKFRRQQDLKVHGWLHTGHRPHSCHQCKAAFRLKHDLNRHLRIHEKRVTCVCGVCEAVFSRERHLKLHEKIHEGVKVLVKTEHNAEGGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415317;
- 90% Identity
- -
- 80% Identity
- -