Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055517.1:6266314-6271999[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00025 0.02 15.7 2.2 2 23 181 203 181 203 0.96

2 21 1.3 99 4.0 2.5 1 21 321 341 321 342 0.92

3 21 1.7 1.3e+02 3.6 5.6 1 23 371 394 371 394 0.92

4 21 4.9 3.9e+02 2.2 0.1 6 19 405 418 401 421 0.91

5 21 0.11 8.5 7.4 0.3 1 23 427 450 427 450 0.91

6 21 0.00013 0.01 16.6 1.0 2 23 530 551 529 551 0.97

7 21 0.16 13 6.9 1.1 1 19 565 582 565 586 0.72

8 21 8.8e-05 0.007 17.1 0.9 2 23 590 611 589 611 0.97

9 21 3.3e-05 0.0026 18.5 0.8 2 23 643 664 642 664 0.95

10 21 0.028 2.2 9.2 0.9 1 23 682 705 682 705 0.97

11 21 0.0099 0.78 10.7 1.3 2 23 719 740 719 740 0.97

12 21 3.5e-06 0.00027 21.5 6.4 1 23 772 794 772 794 0.98

13 21 0.071 5.6 8.0 0.9 3 23 811 832 811 832 0.91

14 21 8.4e-05 0.0067 17.2 1.3 1 23 858 880 858 880 0.98

15 21 0.00017 0.013 16.2 0.5 2 23 896 918 895 918 0.94

16 21 0.00068 0.053 14.3 0.0 3 23 934 954 932 954 0.94

17 21 0.12 9.5 7.3 0.1 1 23 980 1003 980 1003 0.95

18 21 0.001 0.082 13.7 1.5 2 23 1014 1035 1014 1035 0.97

19 21 0.012 0.98 10.4 0.8 3 23 1049 1070 1047 1070 0.96

20 21 1.7e-05 0.0013 19.4 2.4 1 23 1076 1098 1076 1098 0.98

21 21 0.00011 0.0084 16.9 0.4 1 23 1131 1154 1131 1154 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00025	0.02	15.7	2.2	2	23	181	203	181	203	0.96
2	21	1.3	99	4.0	2.5	1	21	321	341	321	342	0.92
3	21	1.7	1.3e+02	3.6	5.6	1	23	371	394	371	394	0.92
4	21	4.9	3.9e+02	2.2	0.1	6	19	405	418	401	421	0.91
5	21	0.11	8.5	7.4	0.3	1	23	427	450	427	450	0.91
6	21	0.00013	0.01	16.6	1.0	2	23	530	551	529	551	0.97
7	21	0.16	13	6.9	1.1	1	19	565	582	565	586	0.72
8	21	8.8e-05	0.007	17.1	0.9	2	23	590	611	589	611	0.97
9	21	3.3e-05	0.0026	18.5	0.8	2	23	643	664	642	664	0.95
10	21	0.028	2.2	9.2	0.9	1	23	682	705	682	705	0.97
11	21	0.0099	0.78	10.7	1.3	2	23	719	740	719	740	0.97
12	21	3.5e-06	0.00027	21.5	6.4	1	23	772	794	772	794	0.98
13	21	0.071	5.6	8.0	0.9	3	23	811	832	811	832	0.91
14	21	8.4e-05	0.0067	17.2	1.3	1	23	858	880	858	880	0.98
15	21	0.00017	0.013	16.2	0.5	2	23	896	918	895	918	0.94
16	21	0.00068	0.053	14.3	0.0	3	23	934	954	932	954	0.94
17	21	0.12	9.5	7.3	0.1	1	23	980	1003	980	1003	0.95
18	21	0.001	0.082	13.7	1.5	2	23	1014	1035	1014	1035	0.97
19	21	0.012	0.98	10.4	0.8	3	23	1049	1070	1047	1070	0.96
20	21	1.7e-05	0.0013	19.4	2.4	1	23	1076	1098	1076	1098	0.98
21	21	0.00011	0.0084	16.9	0.4	1	23	1131	1154	1131	1154	0.94

Sequence Information

Coding Sequence: ATGGCGGAATCGAGACTGGCAAATTTCAATTCGTGCTGCAGACTGTGTTTGTCTGAATCTTTGGACAATCTAAAGTCGGTTTTTGATGAAAGTGTAGAAGATCGAGGGTTACAACAGAAGATTTCAGCTTCTTTAGGAGTCGAGATCTTGAGCGACGACAAATTCTCAACTCTGGTGTGCCTCCAGTGCATAGATAAAGTAAACAACTGGCAATCCTTCAAGCTCTCCTGCTGTGAAAACCAAACCAAGCTCGAGCAATGGATGAACCTAAACGCCGGCGATCTTTCCGATGGgAACATCCAAATCAAAGAGGAGCCCATCGACGCTAGCGAAAACGACGCTCTTATCCCCGACGTGGTGATGGTGAACGGTGAAGTTCCCGTAGTAAAAAACGAGCAACTCGAGGAAGACTACAACGACTTTCCACCGCCTTTAACCCCACAAGGAGGAGAGGAAGACGTCGACATTGAAGTCCTCGCCACGTCCCCAATTTCGCAACTCACGAGCAATGGTGATATCGCTTGGGACGGAAATTCAcgaaaatgcaaattttgtgGGAAACAATTCAGTTCATCGGGCAACCGTAAGAAACACGAGAAGATCATTCATGGAGTTAAAACTCATTCTGTAACCGAATTAGATGTCGGTTCGTTGAGTCAGGACGAGAGGTCGCAGAGTTCTATGGACTCGTCAGTGGTCACCAACGAGCCCAAAGTCACCGAACCAACTCCTGAAGAGAAGAAGATTTTATTCGCGGCGGGTCTCAAACTCCTACAGAGGAACTCAACACCACCAATATCATTAGAGGCTCTTTCCAGGATTGAAAACAGTTACATTGCGAAGTGTAAAGCAATGGTCGAAATGCACAAGAGTTTGAAATGTGCATGTCATAACGTGTTACACCCAAATTTGAAAGGACTGTTGTCACATTTACGAGCGTTACGTATTTGGTTCCCTGTCTTTACTTGTTACCATTGTATGATCACTTTCACCGATAGATCGACGAGTACAAGGCACTACTTGAGGTGCCCAAGGTCGAATTTAGAAACTCTGATTAAGTTGTCGAATTTAAAGAAACGCAGCGAAGTCAAGACTCGTCTCTATCAGAATTACAAGTGCACTCAGTGCAGGTTTATGTACTCTTTCCACGAAGATTTCTGTACACATGTTGATGAGGACCACAGTCATATCGAGCTGCCTTACAAATGCTCCTGTGGCCGACTCTTTACATCACTGGAGGATTATAAAGACCACGCTTATGTTAGTTGTCTTGTTGAGTTTTATTGTGATGTTTGCTTCGTTACTCTGAAGACTTTGGATGCTTTCCAGAAGCATGCTGCTCAAGTTCATGATAATTCCGAAGGTTTTGTTCTACTTCAAGATGATAATTATAAACAGAGGAAGTGGTCGTTGACTCCTCCACGAACCTCATCGACGAGACAGAGTGTGAAGCGCGAGCACGCTGATGAAAGTAATATAGTGCCTGCTAAACGAAGAAGCTCTTTCAAACCACCGATATTGGAATCTGAAGACTCCTCAGAGGGAAAAGTTATCAACCCTGTACTGATCCAGAGGGTTCCAGGGACGGTGTGCCCTGTTTGTTCCCGGGAATATTCAAGCAATAATAACATGTTCCGACACTACAAAACGCATTTCCAGCAAGAAGTACCGGAACAAGTGGATGATTCTATATATTGTTGTCCTGACTGTGGAGGCATGTTCAGTACGAATGAGTGGGAAAAACACAAAGGAATGCACAAGAAAAAGACTTGCAAAGAATGCGGAAAAGTGTTCCAATTCCAGTCTGAACTAGACCAACATCGGAGTGTCCATCTCAATCTTAAACTGTACAGAGATTCCAAGACGCAAGCTTATAAGAGTACCATGGCGAGTCCCAACAGTGATGAAGCCAACAACATCGTTATGATGTGCGAGATTTGTGATAGAATGTTCACTTCGAAAGAACAGCTTAAAGAACATAAGTTGCAACACGAGAACATGCCAGTACTGGAATCGGTGGAAACCGAAGAAAAGCCTAAGAAGTTCACCTGCAAGCTCTGCAATAGAAACTACTCGGCTTACGGCGGTCTGTGGGACCATAACAGAAAGAAACATCCCGAGAACAAGCTCCAAGGCAGTGGAAGCTTCCCCAGACAAtgtaaatattgcgaaaaagtGTTCTTCACCGGCGGCTCATACTTTATGCATAAGCAAATGCACGAGAGACAAAACCAGAAGTTGTTGCAATTGGGGGCATCCCCTGTCCACCCCTCAACGGAAGAAGACACGAATGAAGAGGACTCTGAGTCGTACCACACTTGCAAACGTTGCTTTAAAGTCTTTTCAACCAAATCTAACTTGAAGAGTCACATGAAATCTCACGGGAGCCCCACAACTAAAAGTGCCAAAAAGAGTACCAAAAAAGTGTGGTGTAACGTTTGTCACTGCGCTTTCGACAGTGCAGCGAGTTTGGAGTTACATAAGGCTGAAGGTCATGGACAGGCGGATGACGACGGCATGCCGACCCTGTCCGATGAACAAAGTGAAGTTGACCTTAAGGCTCCGTTCGTTTTTACCTGTGATGTCTGCGTGCAGACTTTTACCACGAAAGTAGCGTTGAAAAAACACAAAGAGAAGCATGCTCGGGAGGTACGACCCGTGCTCAAGAACAAACAAGCTCTTGTTTATTGTAAATATTGCAAAATATCATTCAGTTCGGCTCTTCAGTTGTCGAATCACATGAAAGATGAGCATATGGAGGACTACAAATCTGTACAACGGAAGGACAAAAACTACGGCTGCAGTGTTTGTGGTAAAGCGTTTGTTTCAATGTCGGCTCTGTACGCTCACCAAGGCTGGCACAAACGCAATAAAGTTGAATCTCAAACGCAACCCCCAATTAAGATTAAAGAGGAACCAAAGACAGAGCCATCGCTGTTTCAGTGTTCAACATGTAGCGCTACTTTACCAAATGACACGGCTCTGCAGATACATATCCTTGAGAAACATCGAAATGTTAATGCTACAGTTTTACCTGCGCGATGTACCATGTGCAATTTAGATTTTAGTTCTCAAGATGAATACGAGCAACATAGGCGCTTCCACGCTATTGTTGAAAAGCAACCCAAAACGAAGACTTACGGCTGCACCCATTGTCCAGCCGGTTTTAGTAAGATAGAAATGTTGAAAACTCATGTGAGACAGTTCCATAAAGATCAGCAAGAACATAAATGTCACTACTGTGATCGTGTTTTTGAAAAGCCAAACTCTTTGGCTATACACTTGAAAGTGCACGAGAAGCAGAAAATGATTACTGGTAATCCAAATAAACCCGTTGCGCCAACAAAGGCTATGTCGAGTTTCAAGCCGACGGGTGGCTCTAAACAGATGTTCTCATGTTCGATTTGTAACAAATCGTTTGAATTACCAAAAGATTTAAGGACGCACACTATACAAGCACATCCTTTCTGA
Protein Sequence: MAESRLANFNSCCRLCLSESLDNLKSVFDESVEDRGLQQKISASLGVEILSDDKFSTLVCLQCIDKVNNWQSFKLSCCENQTKLEQWMNLNAGDLSDGNIQIKEEPIDASENDALIPDVVMVNGEVPVVKNEQLEEDYNDFPPPLTPQGGEEDVDIEVLATSPISQLTSNGDIAWDGNSRKCKFCGKQFSSSGNRKKHEKIIHGVKTHSVTELDVGSLSQDERSQSSMDSSVVTNEPKVTEPTPEEKKILFAAGLKLLQRNSTPPISLEALSRIENSYIAKCKAMVEMHKSLKCACHNVLHPNLKGLLSHLRALRIWFPVFTCYHCMITFTDRSTSTRHYLRCPRSNLETLIKLSNLKKRSEVKTRLYQNYKCTQCRFMYSFHEDFCTHVDEDHSHIELPYKCSCGRLFTSLEDYKDHAYVSCLVEFYCDVCFVTLKTLDAFQKHAAQVHDNSEGFVLLQDDNYKQRKWSLTPPRTSSTRQSVKREHADESNIVPAKRRSSFKPPILESEDSSEGKVINPVLIQRVPGTVCPVCSREYSSNNNMFRHYKTHFQQEVPEQVDDSIYCCPDCGGMFSTNEWEKHKGMHKKKTCKECGKVFQFQSELDQHRSVHLNLKLYRDSKTQAYKSTMASPNSDEANNIVMMCEICDRMFTSKEQLKEHKLQHENMPVLESVETEEKPKKFTCKLCNRNYSAYGGLWDHNRKKHPENKLQGSGSFPRQCKYCEKVFFTGGSYFMHKQMHERQNQKLLQLGASPVHPSTEEDTNEEDSESYHTCKRCFKVFSTKSNLKSHMKSHGSPTTKSAKKSTKKVWCNVCHCAFDSAASLELHKAEGHGQADDDGMPTLSDEQSEVDLKAPFVFTCDVCVQTFTTKVALKKHKEKHAREVRPVLKNKQALVYCKYCKISFSSALQLSNHMKDEHMEDYKSVQRKDKNYGCSVCGKAFVSMSALYAHQGWHKRNKVESQTQPPIKIKEEPKTEPSLFQCSTCSATLPNDTALQIHILEKHRNVNATVLPARCTMCNLDFSSQDEYEQHRRFHAIVEKQPKTKTYGCTHCPAGFSKIEMLKTHVRQFHKDQQEHKCHYCDRVFEKPNSLAIHLKVHEKQKMITGNPNKPVAPTKAMSSFKPTGGSKQMFSCSICNKSFELPKDLRTHTIQAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415315;
90% Identity: iTF_00415315;
80% Identity: -