Gcor002788.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- ZNF275
- Assembly
- GCA_029298725.1
- Location
- CM055510.1:5817864-5823260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.64 51 5.0 1.8 2 23 145 166 145 166 0.92 2 17 4.5e-05 0.0035 18.0 0.2 2 23 170 191 169 191 0.97 3 17 0.096 7.6 7.6 0.4 2 19 197 214 197 216 0.94 4 17 3.6 2.9e+02 2.6 6.1 1 23 224 247 224 247 0.96 5 17 2.2e-05 0.0018 19.0 0.6 1 23 256 278 256 278 0.98 6 17 1.9e-07 1.5e-05 25.5 0.3 3 23 286 306 285 306 0.98 7 17 1.1e-06 8.8e-05 23.1 4.4 1 23 312 334 312 334 0.98 8 17 2.2e-06 0.00018 22.2 0.8 1 23 340 362 340 362 0.98 9 17 0.014 1.1 10.2 1.6 2 23 474 495 473 495 0.94 10 17 0.021 1.6 9.7 0.7 2 23 499 520 499 520 0.96 11 17 0.13 10 7.1 0.3 2 21 526 545 526 546 0.93 12 17 7.3e-07 5.8e-05 23.7 1.8 2 23 563 584 562 584 0.97 13 17 0.00029 0.023 15.5 1.5 1 23 594 616 594 616 0.96 14 17 5.2e-06 0.00041 21.0 0.2 3 23 624 644 622 644 0.97 15 17 0.00015 0.012 16.4 0.2 1 23 650 672 650 672 0.98 16 17 4.1e-06 0.00033 21.3 0.2 1 23 678 701 678 701 0.97 17 17 0.00062 0.049 14.5 2.3 3 22 709 728 707 728 0.95
Sequence Information
- Coding Sequence
- ATGGACATGCATAATGAAAAAGCAGCCCCCATTTGTGACACTTGTGGTCAATGGGACCACACTTACACATACAAGCAGCCGAAGCTACTTTCGTCGTTCAAAAAGGAGAAAGGACCACATTTTGAAGCGGTTTGGATCTCCAACGGTCAGCCTTCAAGCCGGCCCTTCATTCAGCCCAAGGCATTTCAAACACAACGTGTTCTTTACCATATTTCTCAAAGTGCTCTTACGCATATAGCACAGGGCAAACACAGCAAACCCGATAAAATACCTCTAAAGCCGTCGCCCATGGCTTTAAAAAACCAACAGTTTCTTGATTCCATCAATGGGAAAAAGTGTGCAAATTGTGATTTAATCAACAATTTTTCTTCGATAAAGGAGTACTTTGAACATGAAAAACAGGATATCAGAGAAGCTAGAAACACTATGCGCAAGTGTGAGGAATGCGGGAAATTATTTTTGGGAAATAAGTTAAAATGGCACTTGCGCGCTTGTCATTTAAACAAAGAATGTGATGTTTGCGGAAAAGTATTTAAGTCGTTGGCTGGATACAATAATCATAAGATAACCCATGAGATTATTAAACCAGAATGTGACAAATGCGGCTTGAAACTGGAATCTTGGGACGCTTTAAAGGACCATTCCTGCGATTTTAAAGGAAGCAAACCTTACAAGTGTTGCACATGCGGAGAACTATTCAAATGTGACATGACCTTAAAGAAACACCTTCTCAGAAGTCATTGTCCTGAAGAAGAACAAAAACCTTATGAATGCGAAATTTGTCAGAAAAGATTTACAACCAAATATAGTCAAGTAGCGCATGTCAGAGGCCATACCGAAAAATTCAGCGCCATTTGTGAAGTTTGCGGTAAAACATACCGCAGCTCCGAAAATTTGCGATTGCATATGCGAATTCATACGGGGTATAAACCCTTCGAGTGTACTGATTGCGGTAAGACATTTTCGAGAAAGTGCAGGTTAATCAAACACCGAAGAGTACATACCGGAGTAAAAAGTTTCTCTTGTGAAACTTGTGGCAAAAGTTTTGCTCAGAAGGAGTCGCTGGATGTACATCGAAGATACCACACGGGAGAGACACCATACGAGTGCCATGCTTGTCAGAAAAAATGGGACCATACATATACCAACAATCAATCGAAAGTGAAGATTCTCTCTGACCACATTCTTCGAAATTTATTGGAAACATCGCACGGTCCTCAAACTAATAGTCAGACTCTCCCTCCTTCTGTTGAAGCACTTCCGGAACTTTCTCCATctgaaataaaaactcaaaagttTCTTAATGCAGTTAACGGAAAAAAGTGTTCAAATTGCTCATCTATTAACAATTTTGCCACATTGAAGGATTTTTTTGATCACAGGCGAAAAGACTCTCATGACgccaaaaagataaaaattatgTGCGAACATTGTGGAAAGTTGTACTCAAAAGGTCAGTACAGGACGCATATAAATAATTACCACACGGAGAGGCAGTGTGGTCTGTGCAACAGCGTATTTAAAACCTTATTGGAGTATAACAGGCACTTGTCACAACATGAAGCTACTATACCACAATGTGAAAACTGCAACTCAACATTTGATTCAATGGACGACTTAATCGGACATTTGTGCGTTTCTAAAGGAGAGCCCAAAAAAAATAGAACTGAAAGCGATCAAAGCTGCGTGTGTAGTGTATGCGGGAAAGTGTACAAACAAAATTACCTTTTAAAAATACATCTTAGAACTCATGCTACCGACATAAATCAGCGAAAACCGTACGAATGTGAGATTTGTGGCAAACGATTTACCAAAAAGGAGCGTCAAAAATTGCATACCAAAGCTCATACTGAAAAAGTCACCATTATTTGTGAAATTTGCGGTGTGACTTTTTCAAATACTCGGAACATTCAAATTCATATGCGAACTCATACTGGAAATCTTCCGTTTCGGTGTTCCGTATGTGCAAGAGCTTTTCCAACGAAGGATAGACTTAAGTCTCACTTGATTGTACACACTAGAGAAAAACCGTTTTCTTGCGAAATTTGTGGCGAAGCTTTTACTCAGAAAGTCTCACTTGATGTACACCGGAGACGTATTCATACAGGAGAGCAACCTTTCGGATGCCATTTATGTCAGAAACGTTTTTTTAGGAAGGACACTTTAACTGTACACTTGAAGAGGTGTCAGCCGAAACATGCTTTAGTTACAGTGGAATAA
- Protein Sequence
- MDMHNEKAAPICDTCGQWDHTYTYKQPKLLSSFKKEKGPHFEAVWISNGQPSSRPFIQPKAFQTQRVLYHISQSALTHIAQGKHSKPDKIPLKPSPMALKNQQFLDSINGKKCANCDLINNFSSIKEYFEHEKQDIREARNTMRKCEECGKLFLGNKLKWHLRACHLNKECDVCGKVFKSLAGYNNHKITHEIIKPECDKCGLKLESWDALKDHSCDFKGSKPYKCCTCGELFKCDMTLKKHLLRSHCPEEEQKPYECEICQKRFTTKYSQVAHVRGHTEKFSAICEVCGKTYRSSENLRLHMRIHTGYKPFECTDCGKTFSRKCRLIKHRRVHTGVKSFSCETCGKSFAQKESLDVHRRYHTGETPYECHACQKKWDHTYTNNQSKVKILSDHILRNLLETSHGPQTNSQTLPPSVEALPELSPSEIKTQKFLNAVNGKKCSNCSSINNFATLKDFFDHRRKDSHDAKKIKIMCEHCGKLYSKGQYRTHINNYHTERQCGLCNSVFKTLLEYNRHLSQHEATIPQCENCNSTFDSMDDLIGHLCVSKGEPKKNRTESDQSCVCSVCGKVYKQNYLLKIHLRTHATDINQRKPYECEICGKRFTKKERQKLHTKAHTEKVTIICEICGVTFSNTRNIQIHMRTHTGNLPFRCSVCARAFPTKDRLKSHLIVHTREKPFSCEICGEAFTQKVSLDVHRRRIHTGEQPFGCHLCQKRFFRKDTLTVHLKRCQPKHALVTVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -