Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055516.1:15034965-15036629[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.6e-05 0.0028 18.4 0.3 2 23 155 176 154 176 0.96

2 12 0.0054 0.43 11.5 0.1 1 23 182 204 182 204 0.98

3 12 1.1e-06 8.7e-05 23.1 0.9 1 23 210 232 210 232 0.98

4 12 6e-06 0.00048 20.8 2.4 3 23 240 260 238 260 0.96

5 12 7e-05 0.0055 17.4 0.4 2 22 267 287 266 288 0.88

6 12 2.1e-06 0.00017 22.2 3.4 1 23 294 316 294 316 0.98

7 12 6.6e-06 0.00052 20.7 0.6 1 23 322 344 322 344 0.99

8 12 2.5e-06 0.0002 22.0 1.9 1 23 350 372 350 372 0.99

9 12 4.5e-07 3.6e-05 24.3 0.2 1 23 378 400 378 400 0.99

10 12 1.4e-05 0.0011 19.7 3.0 1 23 406 428 406 428 0.99

11 12 0.00032 0.025 15.4 1.8 1 23 434 456 434 456 0.96

12 12 1.3e-06 0.0001 22.9 0.1 1 23 462 484 462 484 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.6e-05	0.0028	18.4	0.3	2	23	155	176	154	176	0.96
2	12	0.0054	0.43	11.5	0.1	1	23	182	204	182	204	0.98
3	12	1.1e-06	8.7e-05	23.1	0.9	1	23	210	232	210	232	0.98
4	12	6e-06	0.00048	20.8	2.4	3	23	240	260	238	260	0.96
5	12	7e-05	0.0055	17.4	0.4	2	22	267	287	266	288	0.88
6	12	2.1e-06	0.00017	22.2	3.4	1	23	294	316	294	316	0.98
7	12	6.6e-06	0.00052	20.7	0.6	1	23	322	344	322	344	0.99
8	12	2.5e-06	0.0002	22.0	1.9	1	23	350	372	350	372	0.99
9	12	4.5e-07	3.6e-05	24.3	0.2	1	23	378	400	378	400	0.99
10	12	1.4e-05	0.0011	19.7	3.0	1	23	406	428	406	428	0.99
11	12	0.00032	0.025	15.4	1.8	1	23	434	456	434	456	0.96
12	12	1.3e-06	0.0001	22.9	0.1	1	23	462	484	462	484	0.98

Sequence Information

Coding Sequence: ATGTCAGAGACAGGTGTCGTCAACTTTATAACTGAATTTAGTAGAGTTTGTCGCACATGTATGACTgaaaaaaacaacgaagattTGTGTTCTCTGTTTGAAAACTCGCTCGACTCTGTTTTATCCCATTTCACTGAAATCAATGTTACAAGAGACGATGGTTTACCGGGAGTCATTTGTAACGATTGCATTTTCACTTTGAATTTGTTTGTGACCTTTAAAGAGCAGTGTCAGAAGTCAGAGACACAGTTGAGGAGGCTTTTGAGCCCCACTGTTGAGAGTTACAGTGATTACAAGACTGTAACGGTTTTGGGTGGTACAATATCAACTATTATTGAATTTAAGAACGAGTCTGTTGATTCTGACAGTAATCCAAAAGTAATTACAGTATTAAATGATTCAAGTGTGTTTGAGCAAGTAGAAACTATTGAAGTTAAACAGAAAAAGGGTGAAATCCCTTTAGAATGTGAAGTGTGCAATAGAACCTTCAAGCTTGAAAGCGCCCTAAGAACCCATCTCATCAAACATGGAAAAAAACTTCATTTTAAATGTGATATTTGCCCAGACGAATTTACTTtgATGTCAGAATTTGAATCTCACGCCCGCATCCACGATAATTACAAACCATTTCCCTGTCCAAAGTGCAATAAAGCCTTTGGATTGACCACAAGTTTAAGAAAACACATGAGGACACACGGCGGCGAACGAAAACATTTATGTGTGACCTGTGGAAAGAGGTTTTACGAACCCGCACACCTCACTgtaCACATGCGCACCCACACTGGTGAAAAGCCCTTGGTTTGTACAAAGTGCGGAAAGCGCTTTTCAGATCCTCACGGCCTTGTAGCTCATGATAAAATCCACACTGGAGAGAAAAAACACGAGTGCAACATTTGTGGAAAAAAATTTGCGCACTCGTCTGTTCTTAAGTCTCATAGACGAGTTCATACGGGCGAAAAACCGTATTCTTGTGATCTTTGCAAAGCAGCGTTTGCTACTTCGTCGTATTTAACAATTCATAAAAGAACACACACTCAAGAGCGGCCTTACAAGTGTAAGATTTGTCCTAAAAGCTTCGTAAGTAACTGTGGATTGGTAACACACGTAAAGACACACACAGGagagaaaaaatttcaatgtagCATTTGTGGGAAACGAACAGGAAGAGCGGCGGATCTTCAGATCCACATGCGCTCCCATACTGGTGAGAAGCCTTACAGTTGCGATTTGTGTTCTAAACGGTACCACACTTCGAGTAATTTAGCCGCACATAAACGGACCCATCTTGGAGTTCGAAATCATATTTGTCTAATTTGTGATAAGGCGTTCGGGGATCCCCGGACACTAAAATGCCATATGAGGATACACACTGGCGAGAAACCATACGTTTGTGGAATTTGCGGGAAACGATACGTTCAGTCCGGACAATTGGCAGCGCATAGAAAAGTTCACGACGTAATTGTGGAAACCAGTACTTCATAG
Protein Sequence: MSETGVVNFITEFSRVCRTCMTEKNNEDLCSLFENSLDSVLSHFTEINVTRDDGLPGVICNDCIFTLNLFVTFKEQCQKSETQLRRLLSPTVESYSDYKTVTVLGGTISTIIEFKNESVDSDSNPKVITVLNDSSVFEQVETIEVKQKKGEIPLECEVCNRTFKLESALRTHLIKHGKKLHFKCDICPDEFTLMSEFESHARIHDNYKPFPCPKCNKAFGLTTSLRKHMRTHGGERKHLCVTCGKRFYEPAHLTVHMRTHTGEKPLVCTKCGKRFSDPHGLVAHDKIHTGEKKHECNICGKKFAHSSVLKSHRRVHTGEKPYSCDLCKAAFATSSYLTIHKRTHTQERPYKCKICPKSFVSNCGLVTHVKTHTGEKKFQCSICGKRTGRAADLQIHMRSHTGEKPYSCDLCSKRYHTSSNLAAHKRTHLGVRNHICLICDKAFGDPRTLKCHMRIHTGEKPYVCGICGKRYVQSGQLAAHRKVHDVIVETSTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415309;
90% Identity: iTF_00415309;
80% Identity: -