Gcor002779.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055510.1:5755362-5759367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.5 7.5e+02 1.3 0.5 13 23 11 21 1 21 0.74 2 19 4.6e-05 0.0037 18.0 0.9 2 23 50 71 50 71 0.98 3 19 2.6e-05 0.0021 18.8 0.3 1 23 76 98 76 98 0.95 4 19 0.00015 0.012 16.4 2.4 1 23 104 126 104 126 0.99 5 19 0.049 3.9 8.5 0.1 2 13 132 142 131 147 0.79 6 19 0.053 4.2 8.4 0.6 3 23 162 182 161 182 0.96 7 19 0.0018 0.14 13.0 4.7 1 23 191 213 191 214 0.96 8 19 0.0064 0.51 11.3 1.0 3 23 221 241 219 241 0.95 9 19 0.017 1.3 9.9 5.5 1 23 247 269 247 269 0.97 10 19 1.2e-05 0.00098 19.8 1.7 1 23 275 298 275 298 0.97 11 19 2.6e-07 2e-05 25.1 1.6 2 23 586 608 586 608 0.97 12 19 0.01 0.8 10.6 2.6 1 23 615 637 615 637 0.93 13 19 0.0015 0.12 13.3 0.4 2 23 644 666 643 666 0.91 14 19 0.0065 0.52 11.2 6.7 1 23 671 693 671 693 0.98 15 19 2.7e-05 0.0022 18.7 0.5 1 23 702 724 702 724 0.98 16 19 1.8e-06 0.00015 22.4 1.2 1 23 729 751 729 751 0.98 17 19 2.1e-05 0.0016 19.1 2.3 1 23 757 779 757 779 0.97 18 19 7.3e-08 5.8e-06 26.8 2.7 1 23 785 807 785 807 0.99 19 19 1e-05 0.00079 20.1 1.0 1 23 813 835 813 835 0.98
Sequence Information
- Coding Sequence
- ATGTGTGGAAAAATATACAACCAATTTGGAAAAGCAGCTCTGAGTAGTCATATACGCAAACACAAGAACTCTACCATTGAGTGTAAACAGTGCGATCAAAATGTTACGGAAGCTGAACCAATCGAAGGTCCTCGAAGAATTATACGCAGGTGCAAGAAGTGTCCATCCACATTTCCAACTCTAAGTCAGTTGATAGCTCATCGCAGATCGCATATTCCGTTGCGATATTTTTGCGATGTTTGTGGTAAAGGTTACCGGGACCAATACTCTCTCAAATCTCATGGAGCTATGCACTCCGACGAGAAGCCATACACCTGTGATGTCTGTGAAGAGAAATTTAAGAATGTTAAATATCTCTATCGCCATAAACGAAGTCATATTGATAAGAAACTAATTTGTCCACACTGTGGTAAAACATATAGATACGACGCTTTAACATCTTTTGCTAATCACTGTAAACAACATGCTGCGAAGAAAGTTGCGTGTGATACCTGTGGTAGAATATTCTTCGAGAAGTATTTAGAATCTCATAAGAATACTCAACATAATAAAGAGTACAAACCACCGGAATTTTCTTGTGATCTTTGCGAGAAAGTTTGCACCTCCAAGAGTATACTAAAGAAGCATGTTCAAACTCATCACGAAGGACAACGGCACTTGTGTGAAACGTGCGGCAAAGCCGTGTTGTCGAAGCAGAGCTTAAAAGATCACATGAAGATTCACACTGGAGAAAAACCGTTTATATGTAGTTACTGTGAAAAAAAGTTTACGtgtaaaaagtttttaaaagaaCATTTAAAGGTGCACACTAAGGACAAGCCTCATGTTTGTCTTCTTTGTGACAAGAGATATACTCAGAGGAGCACTTTGACGCTACACATACGAAGTGCTCACACTGGAGAAAAGCCATATATTTGCAATGTGTTGTCCAATTCAGCCAACAACAATAATATAGGAGTAGAATTCACATTCGTTGCGGTTAATGGTGGTTTTAAAACAGAGAAGCAGGATTTCGATGATATTGAGGAAAATATTCCATCCGCTATAATCCAAAAAAACGACAAACAGCTTTCTCATGAGCAGTTAACTACATTTGATCTGAGCAACCAGAAAGCGTTGGTTCAGCACATTCAAGAATACTTAGAAACTGATGACAAGAAGGGCATGACATCGAAACGgagaaaaaataagaaaacatctaataaaaatttcataaaaaaaggTCCAATGGCTCCGGAAACAACTGACAAGTTTGTGTGCATCTTGGACCAAAGTGGAAACGTCATCTTTGGGAAACTTGATGGCTCTTTAGAAGGAGTGGATTTTAGCTCCGGAGAATTCTTTTGCGTTTCAGATGGCAATAAAATTCCCTTAATTCCACTCTCTGAACAACCTACTGATGTGACCAACTCTGAAAATTCCGAGTGTTGTTTAGATGGACAACATTTCTTTTTCTCTACACTCACAACTCACGAAGATAAAGGGAATTTTGAAGAACTCTATGACCCAAATGTTTCAAATCTCCAGAACCTACTAGTTCAAGAACGAAACGAAGGTGATTTTCTTAAACCTTTGTATCCTGCGAATGAATTGACTAACAAGGACTCGACAACTAATTTATTTCCTTTAGAAACTGGACCAAAAAAGCAGATGGTGAAAAGATTCAAGTGTTCGGTGGTTCCATCTATTCTGAGGAGGAGAAGATCCAAGAACAATTTGAAGAAAGTCCGCAAAAAGAAGCGAATTCTTCTGGAAACTTGCAACATTTGCGACAAACGCTTCTCAAACTCGGAAACTCTCAATCGCCACATTCAAACTTTTCACTCTCTTGAACCAAAAATATTCACTTGCAATACTTGCGGTAAAGAGTTCCATAAAAAGCAGCTCCTGGGTTACCACGAAGCTCGCCACATCAAGAATTTCAAAGTAAAATGCGATCAATGCGACAAAGGTTTTTACACAATGGCTGAATACAGGAAACACTACGCCGCACGACACAAAGGAGTTAGATATGTTTGTCGTAATTGCAACAAATCGTTTCTTGACAAGCACTGCTTCCGGCGCCATATAATAACCCATGACAGTAACTACGTCAAAGAGGAATATAAATGTACAGAGTGTGATAAGATTTATATGACCAAAGGTGGTTTGAATGTACATAAAAAAATCCATCAAAATATAACTTACATGTGTGATATTTGCGGGAAATCGGTGACTTCGAGGACTAGTTTGAATCATCATATGATGTTACATAGTGGTGAAAAACCGTTTATTTGCGAGACTTGTGGCAAGTGTTTTAACAAGAAGATGTTATTGAGGATACACGAAAGGATACATACGAAAGAAAAACCGTACACTTGTTCACAGTGCAAGAAGACGTTTTCACAGAGGAGTACTTTAACTATACATATGCGGATTCACACTGGGGAAAGGCCGTACGTGTGCAGGATTTGCCAGAAGAATTTTGTTACCAAGACGTTGTTAAAAGTGCATGCTAAAACTCACGGGACCGCTCTCGTTAACATGTGA
- Protein Sequence
- MCGKIYNQFGKAALSSHIRKHKNSTIECKQCDQNVTEAEPIEGPRRIIRRCKKCPSTFPTLSQLIAHRRSHIPLRYFCDVCGKGYRDQYSLKSHGAMHSDEKPYTCDVCEEKFKNVKYLYRHKRSHIDKKLICPHCGKTYRYDALTSFANHCKQHAAKKVACDTCGRIFFEKYLESHKNTQHNKEYKPPEFSCDLCEKVCTSKSILKKHVQTHHEGQRHLCETCGKAVLSKQSLKDHMKIHTGEKPFICSYCEKKFTCKKFLKEHLKVHTKDKPHVCLLCDKRYTQRSTLTLHIRSAHTGEKPYICNVLSNSANNNNIGVEFTFVAVNGGFKTEKQDFDDIEENIPSAIIQKNDKQLSHEQLTTFDLSNQKALVQHIQEYLETDDKKGMTSKRRKNKKTSNKNFIKKGPMAPETTDKFVCILDQSGNVIFGKLDGSLEGVDFSSGEFFCVSDGNKIPLIPLSEQPTDVTNSENSECCLDGQHFFFSTLTTHEDKGNFEELYDPNVSNLQNLLVQERNEGDFLKPLYPANELTNKDSTTNLFPLETGPKKQMVKRFKCSVVPSILRRRRSKNNLKKVRKKKRILLETCNICDKRFSNSETLNRHIQTFHSLEPKIFTCNTCGKEFHKKQLLGYHEARHIKNFKVKCDQCDKGFYTMAEYRKHYAARHKGVRYVCRNCNKSFLDKHCFRRHIITHDSNYVKEEYKCTECDKIYMTKGGLNVHKKIHQNITYMCDICGKSVTSRTSLNHHMMLHSGEKPFICETCGKCFNKKMLLRIHERIHTKEKPYTCSQCKKTFSQRSTLTIHMRIHTGERPYVCRICQKNFVTKTLLKVHAKTHGTALVNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -