Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055513.1:9741606-9743390[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.9e-07 3.1e-05 24.5 0.7 1 23 114 136 114 136 0.99

2 15 9.9e-09 7.8e-07 29.5 0.9 1 23 142 164 142 164 0.96

3 15 0.00052 0.041 14.7 3.5 1 23 170 192 170 192 0.98

4 15 2.2e-06 0.00017 22.2 1.5 1 23 198 220 198 220 0.99

5 15 1.7e-06 0.00014 22.5 2.2 1 23 226 248 226 248 0.98

6 15 1e-05 0.00082 20.0 4.6 1 23 254 276 254 276 0.98

7 15 0.0012 0.098 13.5 0.9 1 23 281 303 281 303 0.98

8 15 3e-05 0.0024 18.6 0.9 1 23 309 331 309 331 0.95

9 15 0.00012 0.0091 16.8 3.9 1 23 337 359 337 359 0.97

10 15 1.7e-07 1.4e-05 25.6 0.7 1 23 365 387 365 387 0.96

11 15 2.4e-05 0.0019 18.9 4.2 1 23 396 418 396 418 0.98

12 15 6.4e-05 0.0051 17.5 3.3 1 23 424 446 424 446 0.97

13 15 6.3e-07 5e-05 23.9 0.7 1 23 452 474 452 474 0.97

14 15 1.6e-06 0.00012 22.6 1.3 1 23 480 502 480 502 0.98

15 15 4.7e-05 0.0037 18.0 3.4 1 23 508 532 508 532 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.9e-07	3.1e-05	24.5	0.7	1	23	114	136	114	136	0.99
2	15	9.9e-09	7.8e-07	29.5	0.9	1	23	142	164	142	164	0.96
3	15	0.00052	0.041	14.7	3.5	1	23	170	192	170	192	0.98
4	15	2.2e-06	0.00017	22.2	1.5	1	23	198	220	198	220	0.99
5	15	1.7e-06	0.00014	22.5	2.2	1	23	226	248	226	248	0.98
6	15	1e-05	0.00082	20.0	4.6	1	23	254	276	254	276	0.98
7	15	0.0012	0.098	13.5	0.9	1	23	281	303	281	303	0.98
8	15	3e-05	0.0024	18.6	0.9	1	23	309	331	309	331	0.95
9	15	0.00012	0.0091	16.8	3.9	1	23	337	359	337	359	0.97
10	15	1.7e-07	1.4e-05	25.6	0.7	1	23	365	387	365	387	0.96
11	15	2.4e-05	0.0019	18.9	4.2	1	23	396	418	396	418	0.98
12	15	6.4e-05	0.0051	17.5	3.3	1	23	424	446	424	446	0.97
13	15	6.3e-07	5e-05	23.9	0.7	1	23	452	474	452	474	0.97
14	15	1.6e-06	0.00012	22.6	1.3	1	23	480	502	480	502	0.98
15	15	4.7e-05	0.0037	18.0	3.4	1	23	508	532	508	532	0.91

Sequence Information

Coding Sequence: ATGACCCACTCGATGTTAGAAAATCCAAATTTATGTAGAACTTGCCTTGCTCAAACTTCCGAAACTCATTTCATTTACACGCAAGTTGAGACTATAACTTTGGCCGAAAAAATTGCTCTTCTTACCAACATATCTCTTTCAGAAAACGATGCACTTCCATCGAATATCTGCAGTGAATGCCAATCACAACTAGATATCGCATACAAATTTCGACAAAAGTGTGAAGAAACCGACAGCGTCCTAAAGAGTTTGCTGATTTGTAGAAAGGACGAACGTGAAAATGAAGACGTGGAAACGAACCAAGACAGTGGTACTTCCACTCCTCCAGCTAATGTATCATACAAATGTGATGTGTGCCAAAAGACGTATAAGCAAAAAGGAAGCCTTATTGCTCACTTGAGGCTTCATACAGGGGACAAGCCATTTCTATGCAATTATTGTGGCAAAAGCTTTGTTAGATCCGACGAACTGCGTCGCCATCTGCGGGTACATACTAATGAAAGACCTTATACTTGTAGGATATGTTCTAAAGGTTTCAAGCAAAAGTTCCATGTTTTGGAACACGAAAGATCGCATGGTAACATTAAAAACTACAAGTGTGACGAGTGCAACAAAACTTTTAGAAGATACGGAGTATTGCGTGTCCACAAACGAATCCATTTCGGTGATAAACTCCACAAGTGTACAATCTGCGAGAAAAAATTCGTCGGCTCAGACACTTTAAGACGTCACTTACGAGTTCATAGCTTGCACAAACCGTACGAGTGTGAAGAATGTCATCGCCGATTTTCCCAAAAAGGACATCTCGATAATCATAGAAAAATCCACAGTAATCAAACATACGTTTGCGGTGTATGTTGCAAGGCTTATACTCAATTATGGAGTTTGAAAGTGCATCTTAGGAACCACTCTGGTGAAAAACCCTTTTTGTGCGCCACATGCGGTAAATTGTTTGGTAGATCCGACGACCTAAAGAAGCACAGCAGAACCCACAGTCATGAAAGACCTTATTGTTGTACTACATGTCCAAAAGCTTTCACGCAATCGTTTCATCTGTTGGAGCATGAAAGAGCACACGAGAGCGATAAAaattttttgtGTGGAATCTGCAGCAAGTCTTTCACGCGAAATGGATCCCTGCGCGCTCATCTGAGGACGCACAGAGCGGACTATGTTGAGAAACAATTTTCTTGTGATATTTGTGAGAAGAGGTTCAGTCTGCACCATTCTTTAAATAAGCACATGTTGGTCCATTCAGGAGAGCGCCAGCATCACTGTCAAGTTTGTCTTAAGgcTTTCACGCAAGCGGGACACTTGGAAGCCCACGTGAAAACCCACACAGGAGAAAAACCTCACATTTGCCAAGTTTGTGGGAAAGCTTTTCCGGTCAAGTCGCGCCTAACCGTCCACATGAGGACGCACACAGGCGAGAAACCTTACATCTGCTCGATTTGTGGTAAAGGTTGCACTACGTCAACAATGCTTAAAGTACATGTGAGAACACACACAGGGGAAACGCCCTATCACTGTCCGTCCTGTCCTAAAGCGTTCTCAAGATCAGATCTTCTAAATACTCATAGAAAAATCTGTAATCATTAG
Protein Sequence: MTHSMLENPNLCRTCLAQTSETHFIYTQVETITLAEKIALLTNISLSENDALPSNICSECQSQLDIAYKFRQKCEETDSVLKSLLICRKDERENEDVETNQDSGTSTPPANVSYKCDVCQKTYKQKGSLIAHLRLHTGDKPFLCNYCGKSFVRSDELRRHLRVHTNERPYTCRICSKGFKQKFHVLEHERSHGNIKNYKCDECNKTFRRYGVLRVHKRIHFGDKLHKCTICEKKFVGSDTLRRHLRVHSLHKPYECEECHRRFSQKGHLDNHRKIHSNQTYVCGVCCKAYTQLWSLKVHLRNHSGEKPFLCATCGKLFGRSDDLKKHSRTHSHERPYCCTTCPKAFTQSFHLLEHERAHESDKNFLCGICSKSFTRNGSLRAHLRTHRADYVEKQFSCDICEKRFSLHHSLNKHMLVHSGERQHHCQVCLKAFTQAGHLEAHVKTHTGEKPHICQVCGKAFPVKSRLTVHMRTHTGEKPYICSICGKGCTTSTMLKVHVRTHTGETPYHCPSCPKAFSRSDLLNTHRKICNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415297;
90% Identity: -
80% Identity: -