Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055510.1:5753146-5754920[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5e-05 0.004 17.9 1.3 6 23 2 19 1 19 0.97

2 19 9e-05 0.0071 17.1 0.5 3 23 27 48 26 48 0.95

3 19 1.6e-05 0.0013 19.4 0.2 3 23 55 75 53 75 0.95

4 19 7.7e-05 0.0061 17.3 4.4 1 23 81 103 81 103 0.98

5 19 2.3e-05 0.0018 19.0 1.6 1 23 109 132 109 132 0.97

6 19 8.1e-05 0.0064 17.2 0.4 1 21 138 158 138 159 0.93

7 19 0.00077 0.061 14.2 1.2 3 23 187 208 186 208 0.95

8 19 1e-06 7.9e-05 23.2 0.8 1 23 213 235 213 235 0.97

9 19 0.00017 0.013 16.2 1.8 1 23 241 263 241 263 0.99

10 19 3.6e-05 0.0029 18.3 1.6 2 19 270 287 269 291 0.91

11 19 1.5e-07 1.2e-05 25.9 0.5 1 23 296 318 296 318 0.99

12 19 6.7e-06 0.00053 20.6 0.9 1 23 327 350 327 350 0.98

13 19 1.9e-05 0.0015 19.2 2.1 1 23 357 379 357 379 0.96

14 19 2.8e-05 0.0022 18.7 3.9 1 19 385 403 385 407 0.94

15 19 5.2e-05 0.0041 17.8 2.5 1 23 413 436 413 436 0.94

16 19 0.0083 0.66 10.9 1.0 3 23 443 463 441 463 0.96

17 19 9.5e-05 0.0075 17.0 6.3 1 23 469 491 469 491 0.97

18 19 0.00031 0.024 15.4 0.5 1 23 497 520 497 520 0.96

19 19 4.2e-06 0.00033 21.3 1.4 1 23 526 548 526 548 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5e-05	0.004	17.9	1.3	6	23	2	19	1	19	0.97
2	19	9e-05	0.0071	17.1	0.5	3	23	27	48	26	48	0.95
3	19	1.6e-05	0.0013	19.4	0.2	3	23	55	75	53	75	0.95
4	19	7.7e-05	0.0061	17.3	4.4	1	23	81	103	81	103	0.98
5	19	2.3e-05	0.0018	19.0	1.6	1	23	109	132	109	132	0.97
6	19	8.1e-05	0.0064	17.2	0.4	1	21	138	158	138	159	0.93
7	19	0.00077	0.061	14.2	1.2	3	23	187	208	186	208	0.95
8	19	1e-06	7.9e-05	23.2	0.8	1	23	213	235	213	235	0.97
9	19	0.00017	0.013	16.2	1.8	1	23	241	263	241	263	0.99
10	19	3.6e-05	0.0029	18.3	1.6	2	19	270	287	269	291	0.91
11	19	1.5e-07	1.2e-05	25.9	0.5	1	23	296	318	296	318	0.99
12	19	6.7e-06	0.00053	20.6	0.9	1	23	327	350	327	350	0.98
13	19	1.9e-05	0.0015	19.2	2.1	1	23	357	379	357	379	0.96
14	19	2.8e-05	0.0022	18.7	3.9	1	19	385	403	385	407	0.94
15	19	5.2e-05	0.0041	17.8	2.5	1	23	413	436	413	436	0.94
16	19	0.0083	0.66	10.9	1.0	3	23	443	463	441	463	0.96
17	19	9.5e-05	0.0075	17.0	6.3	1	23	469	491	469	491	0.97
18	19	0.00031	0.024	15.4	0.5	1	23	497	520	497	520	0.96
19	19	4.2e-06	0.00033	21.3	1.4	1	23	526	548	526	548	0.97

Sequence Information

Coding Sequence: ATGTGTGATAAGGCTTATAGGAGGAAAGAGCATTTGACTGAACATCTTAGAACTCACGATAATGAAACACCAAACCATTGTGAGATCTGTGAGAAAAGATTCATTACGAAGATGGGTTTGAAGGCACATATTGCTGTAAATCATGAAAAAATGAAACATCTATGTGCCATTTGTGGTAAAGCTCTGACATCTGCTGGCAGTTTGAAAGTGCACATGAGGCTGCACACTGGAGAAAAACCATTTACGTGTAGTTTTTGTACTAAAAGTTTCGCGAAGAAGCAGCATATGACTATACATCTAAGAGTACACACGAAGGAGAAACCACATGTTTGCAAATTTTGCGGCAAGAGTTACACTCAAGGATCTACACTGTCGCTGCATGTTCGAACAGTACACGTTGGTGATAAACCTCACATCTGTTTAATTTGTTCCAAAGCTTTTGTAACGAAGAGCTTACTGAACGCTCATTATAAGTACAGCGATGTTTCTGTAAAACTCGAAGAAACCGACCCACTTGACTGTGACAATAAAACCAAATCAAAAACAAGCCAAAACCTTTGCAAAATCTGTGACAGAACATTCCCAGCCTACAAAACGTTGCGGAAACATCGAAAGGACATGCACACATTAAAAACCTTCACTTGTACAGTATGTAAGAAGATGTTTAAGGACCAGTGGAACTTAAATAAACACGCTGAAATACATTCCGATGAAACAAAGTACTACTGCAAGGACTGCCAAGAACCCTTGAAAACATATCAACAGTTACAAGAACACAGACGGAGGCATAGAAATCCGAGAGGTTTAGTTTGTCCCGACTGTAATAAAGTCTTTGTGTCCAGTTCTTCGTTTCGGAAACATTGTCTGGCTCATAAAGGAGTGCGTTACACTTGTGATGTTTGTAAAAGAAGTTTTAGTGATCCAGGTAGTTTAAAAGCACACTTAAAGAAGCACGAAGAAAATTTTGTACAACCTGTTTACAAGTGTGAAATTTGCGATAAAGAGTACATTGTTGAGTACAATTTAAAGAACCACATTGCAACGTGTCACGAAGGAGAACGTACCTGGCACATCTGTGAAACCTGTGGTAAAAAAGTGTCGTCAAAGAAAAGTTTAAGGAATCATCAAATGATTCATAACAACGAGAAACCGTACAAATGTGATAAGTGCGATAAGAGCTTTAGGAAGAAGGAGCATCTTACTGATCACAGCTGGACACATAGTGGTGAAAAACCGCACGTTTGTGAATTTTGTCGAAAAGCTTTCACCACAAGAAAGAATCTAAAAGTTCATGTTACGATTTATCACGAGGGCAAACGACATTTGTGTGATATTTGTGGTAAGGAAATGGCATCTGTTACCAGTTTGAATAATCACAAAAAGACGCATACTGGGGAGAAGCCATTTGCCTGCACCTATTGTGGAAAGAGGTTTACGAAGAAATACCATTTACAGTGTCATATCAATGTGCATACTAAAGAAAAACCATATGCTTGCAAGTTCTGCGAAAAAAAGTATACACAAGGAACTTCCTTGCAGTTGCATATTCGAGCTGTGCACAGCGGGGAAAGGCCTCATGTGTGTGACATCTGTAACAAAGGATTTATCACGAAAACTTTATTGACTGCACATCGAAAATCTCATTGGCCAGGAGATATTTAA
Protein Sequence: MCDKAYRRKEHLTEHLRTHDNETPNHCEICEKRFITKMGLKAHIAVNHEKMKHLCAICGKALTSAGSLKVHMRLHTGEKPFTCSFCTKSFAKKQHMTIHLRVHTKEKPHVCKFCGKSYTQGSTLSLHVRTVHVGDKPHICLICSKAFVTKSLLNAHYKYSDVSVKLEETDPLDCDNKTKSKTSQNLCKICDRTFPAYKTLRKHRKDMHTLKTFTCTVCKKMFKDQWNLNKHAEIHSDETKYYCKDCQEPLKTYQQLQEHRRRHRNPRGLVCPDCNKVFVSSSSFRKHCLAHKGVRYTCDVCKRSFSDPGSLKAHLKKHEENFVQPVYKCEICDKEYIVEYNLKNHIATCHEGERTWHICETCGKKVSSKKSLRNHQMIHNNEKPYKCDKCDKSFRKKEHLTDHSWTHSGEKPHVCEFCRKAFTTRKNLKVHVTIYHEGKRHLCDICGKEMASVTSLNNHKKTHTGEKPFACTYCGKRFTKKYHLQCHINVHTKEKPYACKFCEKKYTQGTSLQLHIRAVHSGERPHVCDICNKGFITKTLLTAHRKSHWPGDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -