Gcor016136.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gnatocerus cornutus
Gene Symbol
ZNF236
Assembly
GCA_029298725.1
Location
CM055517.1:2021611-2043685[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 7.7e-05 0.0061 17.3 0.6 1 23 37 59 37 59 0.98
2 25 0.0017 0.13 13.1 0.1 1 23 65 87 65 87 0.98
3 25 0.00031 0.025 15.4 0.2 2 23 93 114 93 114 0.97
4 25 4.4e-05 0.0035 18.1 0.1 1 23 120 142 120 142 0.98
5 25 0.013 1 10.3 1.8 2 23 154 175 153 175 0.95
6 25 4.4e-06 0.00035 21.2 1.2 1 23 199 221 199 221 0.97
7 25 1.6e-05 0.0013 19.4 2.0 1 23 227 249 227 249 0.97
8 25 0.0011 0.089 13.6 2.2 1 23 255 278 255 278 0.95
9 25 0.006 0.47 11.4 5.2 1 23 288 311 288 311 0.97
10 25 6.8e-07 5.4e-05 23.8 1.0 1 23 373 395 373 395 0.98
11 25 0.0029 0.23 12.3 0.9 1 23 401 423 401 423 0.94
12 25 0.00014 0.011 16.5 3.5 3 23 431 451 430 451 0.98
13 25 6.4 5.1e+02 1.8 1.7 1 19 456 474 456 479 0.81
14 25 0.00034 0.027 15.3 3.1 1 23 510 532 510 532 0.97
15 25 0.0092 0.73 10.8 3.6 1 23 538 560 538 560 0.96
16 25 4e-06 0.00032 21.3 1.6 3 23 568 588 566 588 0.96
17 25 0.00028 0.022 15.5 3.2 1 23 594 616 594 616 0.98
18 25 0.00018 0.014 16.1 1.5 2 23 824 845 823 845 0.96
19 25 1.5e-06 0.00012 22.7 3.1 1 23 856 878 856 878 0.97
20 25 8.8e-06 0.0007 20.3 2.0 1 23 884 906 884 906 0.98
21 25 0.00028 0.022 15.5 1.8 1 23 914 936 914 936 0.97
22 25 0.34 27 5.8 6.4 1 23 942 965 942 965 0.94
23 25 2e-06 0.00016 22.3 0.9 1 23 1074 1096 1074 1096 0.98
24 25 0.00032 0.026 15.3 0.4 1 23 1102 1124 1102 1124 0.98
25 25 0.032 2.5 9.1 0.4 1 23 1130 1153 1130 1153 0.97

Sequence Information

Coding Sequence
ATGGCCTGCTCTGAAAACTCTGTTGTGTTTTTAATTCACACGTTACATAGTACTTTCAGACCCGATGGCCCCAAAGACGAGCCTCCTCCACAAAAACCCACCACCCTGTACAAATGCCCCAAATGCAAAgaagtctttgagaaaatcgccCTGTATAGAAAACACATGATGTGGCATAGAAACGTGAAGAAGTTCAAATGCGACCAGTGTTCAGCCGGGTACAACGTGGAAACCAATTTGAAGATTCACATGGCGATGCACGCCGAAGGGAAACCGACTTGTCCCATTTGCAGCATTTCTTTCCAGAGGTTGGCGAGCCTGAAGTCGCATTTGATGTTGCACCAAGTGGAGGAGTTGTACACGTGTGAAGACTGCGGCGCTGAGTTTGATAAAGAGGAGGAACTGAACAAGCATCTTCAAAACCATTTGAACAATGTTGTCCAGGAGAGTAATGGCTTGGTTTGTTCTTATTGTAACGTGCAGTTTGAGGACAGGAAGAGCTATAAGGAGCACATAACGCATCACATTAAGGTGAAGAAGATGGTTTTGTCCGGGAAGAAGTCCAGGAGGACTAGTGGGAATAAAAACAACCCCCATGTTTGTAGCGTGTGCCAGAAGGGCTTCTCGAAGTTGTCCCTTCTGGAGCGCCACCTCAGAGTGCACAGCGGCGAGCGCCCGTTCATCTGTGAGCACTGCAACAAAGGGTTTAACCAGAAGGGCACCCTTCAAATCCACCTCAGCAAGCACACCGGCATCAAACCCTTCCACTGCACCCTTTGCTCGGCGAAATTCAACCAAAAAGGCAACCTCCGAGTCCACGTGGAGAAAACCCACACCGCCCCCATGCCAGGGGTGAAAATGTACAAATGCCCCCACTGCACGTGTATTTTCAAGAAGATCGCCTCGTTGAACGTCCACATCGCCAAGTGCCACGCGAGCAGTGAAGAAGTCGTCGCGGACATCACCAACGTGATGAGTCGGCTGAAGGAGTTGGAGCAGCACCAGGAAGTGGCGGAAGGGACCAACACGAGCTACGTGAAGTTAGCCGAGTCGCTCCTCGATGGCACTGTCAGACGGTATTTGGTCATGCAGAAGAAGGTCAACGACGCCAAGTGGTACATCTGCACGTATTGCAGCAAGGAGTTCAAGAAGCCCTCGGATCTCATCCGCCACACGAGGGTGCACACGCGAGAAAAGCCGTTTCAGTGTGAACAGTGCGGGGCGTCGTTTGCTCTCAAGTCTACGCTGTTTTACCACGACAAAACTCACGCCAGTGCTACTAGTAATTTCTGTCCGAAGTGCAAGAAGAAGTTCTCGTCCATGCGGTCGCTCAACATGCATCTGAGGAAGCACACCGAGAAGCAACACAAGTGCCTCCACTGCAACAAATGGTTCACTTCCCTGCAAAAAGCGCGACTCCACGACAAACAAGCACACGGTGAAGCCGACGTCCACCTCAAGCAACCCCTTTTGGACACCCCCGACGGCTTACTCCCCATGACCCAGAAAACTGCCACCCCCAAACAACACCAGTGCTCCCTTTGCAAAGCCAAATTCAGCAAAGTCACGAATTTGCGAAGACACATGCTTCTCCACAGCGGAGAAAGAAAGTACAAATGCGAGCAGTGCTTCAAGTCGTACTTTACAGCACACGCGTTGAAAGAACACTCTTTGTACCACTCGGGAGTGCGGAATTTCGGGTGCAAAGTCTGCGGGAAGAGGTTCACCACGTCGTCGCTGCTCAAGAGACATTCGCTTAGTCATAATACGACGAAACCGTACGTGTGTCCTTATTGTACTAAGAGTTTCAAGAGCGAGATGTTGTGTCGGAAGCATATGAATATTCATAAGAAGGAAATCGCGCGCGCTGAAGAAGTGGTGCCGACTGTCAGTGATGTGTTGTTGACGGACAATACTCAGGGTATAGAAATAAACAACTTCCAGTTGGTAACTCAGGATAACGACAAACTGCCGGAGCCATCGATCATCGACCAGCAACTCTACGAAGTAACGCCAAACTCCATCCAGATCATCACCAACTCCGATAAAAACCTCACCCCGGACTCGAATCAAATCCAGACAATTTTCATCAACTGCGACGATCTCCAACTAAGCGACAATTTGTACTCCCAGAACCCCGACGCCATGTTGTTCAACTCTTTACCAGACTTACAAGACAACACTACATTTAACATCGATCCCATCACCAACAACTTCATTTATAACAACGAAATCTTGTCCGATCAAGACAAGTCGAAACTCGGAAAGAAGGAAACTGACGCCGCGTTAACAGGATCTATACCCTATTATTCTCAGTCTGAGTTAAATCTACTTCTGAGTCTAGGTCCTGAGTTTGAAAGCAACAATTGTGATAATTTGAATCTGCCTGATATTAATTTGAACGAGGTGCCGGTGTTGAGCGTGGATGAAGCGCCGAAGGAGTGTGAGAAAGAGGCGAAGAAATTGTTGAGTTGTGGGAAGTGTAACAAATTGTTTACCAATAAGAAGACGCTGGCGAAGCATGTGCAAAGTCACAAGGAAGGAAAGACGACGGGGGGGAACATTCATCCTTGCAGTTTTTGCGAGAAGACTTTCAAGAAGAATTCTGATCTGgTCCGCCACATCCGCACCCACACCGGCGAAAAACCCTTCGCCTGCGACAAATGCGAGAAGCGCTTTTCTTTAAAATCAACCCTCCTCTCCCACCAACGCACCCACAGCCCAGTCATCCACAAGCAGTTCAACTGCACAGTTTGCAACTCCTTCTTCTCCTCGAAATCGAGTCTAAAAGTCCACACGACCGTCCACACAGGCGACAAAACCCACAAATGCAACTTTTGTACCATGAAATTCCGCACCGCTGCCCATCGAAAGTCCCATGAAAACAACTACCATATCAACCCTTCGAAAAAACGCACGAAAAACAAAGTCACGAACCTCTTGGCGTCGGTCGCGATGGACGTGCTCAACCAAGATCAACCAGAGACTCCACAAGTTGTTAATGAGTTGGAGAACATCCTAGTAGTACAAGAACAGTTGCCGTTTGCTGGCGACCAGTTGCTCCTCAACGAGGCTAATCCGACTGATTCGTTGATTTTTCAACAGTTGCAACCGAATATCTTGTTGCAAGATAACTTGTTGCCCTCGTCATTGATACTCAACGATGGTACTTTTATTAATGTTAAGGCGATTGGTGAAGAAGTGGAGAAACCGCGGAATTTCGAATGTGAAATTTGTGGGAAACGATACGCATCAAAAGACGTTCTAAGGAAACACAGGAAAACTCATGGGACGGATAAGAAGTTTCGTTGTAAAAAGTGTGAGAAAGGATTCGATGATGAAGAGAGTTTGGGGGTGCATGAGAAGACCCATGATGGGTTTCGCCCATATTCGTGTCTGTACTGCGCCAACAGTTTCGCAAAGGAGCAAAGTTTGGCCACCCATGTGAAGAGGATGCATGGGATTTCGTTTAAGGATTTACTTTCGTACGATATTACGTGA
Protein Sequence
MACSENSVVFLIHTLHSTFRPDGPKDEPPPQKPTTLYKCPKCKEVFEKIALYRKHMMWHRNVKKFKCDQCSAGYNVETNLKIHMAMHAEGKPTCPICSISFQRLASLKSHLMLHQVEELYTCEDCGAEFDKEEELNKHLQNHLNNVVQESNGLVCSYCNVQFEDRKSYKEHITHHIKVKKMVLSGKKSRRTSGNKNNPHVCSVCQKGFSKLSLLERHLRVHSGERPFICEHCNKGFNQKGTLQIHLSKHTGIKPFHCTLCSAKFNQKGNLRVHVEKTHTAPMPGVKMYKCPHCTCIFKKIASLNVHIAKCHASSEEVVADITNVMSRLKELEQHQEVAEGTNTSYVKLAESLLDGTVRRYLVMQKKVNDAKWYICTYCSKEFKKPSDLIRHTRVHTREKPFQCEQCGASFALKSTLFYHDKTHASATSNFCPKCKKKFSSMRSLNMHLRKHTEKQHKCLHCNKWFTSLQKARLHDKQAHGEADVHLKQPLLDTPDGLLPMTQKTATPKQHQCSLCKAKFSKVTNLRRHMLLHSGERKYKCEQCFKSYFTAHALKEHSLYHSGVRNFGCKVCGKRFTTSSLLKRHSLSHNTTKPYVCPYCTKSFKSEMLCRKHMNIHKKEIARAEEVVPTVSDVLLTDNTQGIEINNFQLVTQDNDKLPEPSIIDQQLYEVTPNSIQIITNSDKNLTPDSNQIQTIFINCDDLQLSDNLYSQNPDAMLFNSLPDLQDNTTFNIDPITNNFIYNNEILSDQDKSKLGKKETDAALTGSIPYYSQSELNLLLSLGPEFESNNCDNLNLPDINLNEVPVLSVDEAPKECEKEAKKLLSCGKCNKLFTNKKTLAKHVQSHKEGKTTGGNIHPCSFCEKTFKKNSDLVRHIRTHTGEKPFACDKCEKRFSLKSTLLSHQRTHSPVIHKQFNCTVCNSFFSSKSSLKVHTTVHTGDKTHKCNFCTMKFRTAAHRKSHENNYHINPSKKRTKNKVTNLLASVAMDVLNQDQPETPQVVNELENILVVQEQLPFAGDQLLLNEANPTDSLIFQQLQPNILLQDNLLPSSLILNDGTFINVKAIGEEVEKPRNFECEICGKRYASKDVLRKHRKTHGTDKKFRCKKCEKGFDDEESLGVHEKTHDGFRPYSCLYCANSFAKEQSLATHVKRMHGISFKDLLSYDIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00415296;
90% Identity
-
80% Identity
-