Gcor002782.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055510.1:5798573-5801014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.6e-08 3.6e-06 27.4 0.2 1 23 9 31 9 31 0.98 2 22 1.2e-06 9.2e-05 23.0 0.6 1 23 37 59 37 59 0.99 3 22 0.012 0.97 10.4 1.7 1 21 65 85 65 86 0.94 4 22 2.2e-06 0.00017 22.2 3.1 1 23 98 120 98 120 0.98 5 22 0.0099 0.78 10.7 0.8 2 23 126 148 125 148 0.94 6 22 0.3 24 6.0 1.2 2 23 155 176 154 177 0.93 7 22 0.82 65 4.6 0.2 1 23 183 206 183 206 0.79 8 22 4.8e-06 0.00038 21.1 4.2 1 23 211 233 211 233 0.98 9 22 0.00041 0.032 15.0 2.7 1 23 242 264 242 264 0.99 10 22 0.00077 0.061 14.2 0.4 1 23 271 293 271 293 0.98 11 22 1.9e-06 0.00015 22.4 0.2 1 23 299 321 299 321 0.98 12 22 3.8e-06 0.0003 21.4 1.0 1 23 327 349 327 349 0.98 13 22 0.00096 0.076 13.9 1.4 1 23 372 395 372 395 0.98 14 22 0.00059 0.047 14.5 3.6 1 23 400 423 400 423 0.94 15 22 9.5e-05 0.0075 17.0 1.0 1 23 429 451 429 451 0.97 16 22 5.5e-05 0.0044 17.8 0.3 1 23 457 480 457 480 0.97 17 22 0.00053 0.042 14.7 3.7 1 23 485 507 485 507 0.98 18 22 0.002 0.16 12.8 4.8 1 23 516 538 516 538 0.98 19 22 1.4e-06 0.00011 22.8 0.0 1 23 545 567 545 567 0.99 20 22 2.4e-07 1.9e-05 25.2 2.9 1 23 573 595 573 595 0.99 21 22 9.1e-06 0.00072 20.2 6.5 1 23 601 623 601 623 0.98 22 22 0.00082 0.065 14.1 1.0 1 20 629 648 629 650 0.94
Sequence Information
- Coding Sequence
- ATGGGCCATGACGGAGTGAAACCATTTGTTTGTGATGTTTGTGGCAAAGCTTTTACCACAAAAGATATGCTTGCTACGCATATTAGATCTCATACGAAGGAAAAGCCCTATAAATGCTCTATTTGTGAGAAAAGTTTCTCACAGGCTGGTTCTCGAAGTGCTCATATGCGGTCCCACACTGGGGAGAAGCCTTATAAATGCGAAATTTGCTCGAAGGCTTATGTTTTAAAGACGCGACTGAAGAGTCATGTGTGCAAGATTTCACCGTTCACCATCCTCATTCGGGCTATTTACCAGTGTGAAAAATGCCCTAAATCCTTCTCCACTCGTCAACAATATCAAAAACACACAATACGTCACAGGGAAAGAACTATTAAATGCCTCCATTGCGATAAGTACTTCATATACCGCAATGAAATGTTAATTCATGTGAATAACGTTCACATTGCCGCCCGACAGATGAAGTGTGACCATTGTGATTACGTCGCCAACAATATCACGACCATTCGGTCTCACGTAATTGTTCACCACACAAGAAACTTTCCATTTCGATGTAAAACTTGTGGTGCTGGTTTTCTAGCACAAGTAACTTTAGATACACATGAACAAGTCCAACATGAAGGTTACCGCTTTTGCTGTGATCAGTGCGGAAAAAGTTTTAAGCTTGAATCGAGTTTAACCACACATCAGAAGACGCATAATCCAGATCATGTGCAAGAAGTTTTTACTTGTCAGACTTGTTCTTTGGTGCTACGATCGAAGAATGGGTACAAGAGGCATATGAGGAAACATTCCGGGGAATTGCCCACGTTTGTTTGTGATATCTGCGGGAAAAGTATCACAAGCATGACAGGTTTTAATCTTCATAAGAAAATGCATGGGGGAGTGAAAAACTATGTTTGCGAGACCTGTGGCAAAGCGTTCATTACATCGCAAATGCTGGTAACTCATAGAAGAGTCCATACGAAGGAAAAACCGTTTAAGTGTCCGATTTGCGAGAAAGGGTTTTCACAGAGGAGTTCGCGGACCATTCACTTGCGTCAACATAGTGGAGAAAAGCCATTCCAGTGTGAATCGTGTTCGAAGAGGCTTGTGAAGTGCGAAGTCCTGGAATACTCTTGTAACGAGTGTCTCACAACTTTCTCCGATAAGATAGAAGCAAGCAGACACAGAAAGACGTTTCACGGGGAAAAAACTCATTCATGTCCGGAATGcggtaaaaaattcaaatacaaTTACCAACGTGATAAGCACTTTCGACTTGTTCACGAAAAACAACGTTCTTTCTTTTGCTCCCTTTGCTCCCAAGCATTTCAAACGAAGCAAGCTCTTCAGTGGCACATGATGAGACACACCAACAATTACGCTTTCAGATGCGAGATCTGCAACGCTGGTTTTCCTACTAACTACGGATTGTCTCGTCATAAAAAAATGATTCACGAAGGGTTTCGTTACGTGTGCGAGCATTGTAATAAACAGTTCAAAGATGTAAGGTACTACCGCAGCCATGTTTTGAAACACAAAATGAATTACACTCAGGAGACATTTCAGTGTGACCAGTGTTCTAAGGTCTTCCGAAGTAaaaaaacattcaattttcACTTGAAGAGACACGAGGGAAATGTGCCACAGTACGTCTGTGATATTTGTGGGAAAAGTGTAGCGACAGCGGCTACACTTCGAGAACACATTCGGATTCATACGGGGGAGAAGCCGTTTAAATGTAATGATTGCGACAAATGTTTTGTGAAGAAGCCAATGCTGAAGGAACACATGCGGGTGCATACGAAAGAAAGACCTTTTAAGTGTAGTCACTGTAGTAAGTGTTTCACTCAGAAAGGAGCTCTAAACACACATGTGCGGCAACATACTGGGGAGAGGCCGTATGAGTGTCTTGTTTGCGAGAAGGCTTACGTCTCGAAGTCGCTTCTAAGTAGACACAAATGCAATGTGTAA
- Protein Sequence
- MGHDGVKPFVCDVCGKAFTTKDMLATHIRSHTKEKPYKCSICEKSFSQAGSRSAHMRSHTGEKPYKCEICSKAYVLKTRLKSHVCKISPFTILIRAIYQCEKCPKSFSTRQQYQKHTIRHRERTIKCLHCDKYFIYRNEMLIHVNNVHIAARQMKCDHCDYVANNITTIRSHVIVHHTRNFPFRCKTCGAGFLAQVTLDTHEQVQHEGYRFCCDQCGKSFKLESSLTTHQKTHNPDHVQEVFTCQTCSLVLRSKNGYKRHMRKHSGELPTFVCDICGKSITSMTGFNLHKKMHGGVKNYVCETCGKAFITSQMLVTHRRVHTKEKPFKCPICEKGFSQRSSRTIHLRQHSGEKPFQCESCSKRLVKCEVLEYSCNECLTTFSDKIEASRHRKTFHGEKTHSCPECGKKFKYNYQRDKHFRLVHEKQRSFFCSLCSQAFQTKQALQWHMMRHTNNYAFRCEICNAGFPTNYGLSRHKKMIHEGFRYVCEHCNKQFKDVRYYRSHVLKHKMNYTQETFQCDQCSKVFRSKKTFNFHLKRHEGNVPQYVCDICGKSVATAATLREHIRIHTGEKPFKCNDCDKCFVKKPMLKEHMRVHTKERPFKCSHCSKCFTQKGALNTHVRQHTGERPYECLVCEKAYVSKSLLSRHKCNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -