Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055510.1:5827056-5833028[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0025 0.2 12.5 0.1 3 21 19 37 17 40 0.88

2 25 0.0017 0.13 13.1 7.3 1 23 45 68 45 68 0.90

3 25 0.00072 0.057 14.2 2.1 1 23 74 96 74 96 0.97

4 25 0.00063 0.05 14.4 0.6 2 23 103 124 102 124 0.96

5 25 0.001 0.08 13.8 3.3 2 23 130 151 129 151 0.97

6 25 0.075 5.9 7.9 1.3 1 23 160 183 160 183 0.97

7 25 0.0025 0.2 12.5 2.2 1 23 190 212 190 212 0.96

8 25 9.6e-06 0.00076 20.2 0.9 1 23 218 240 218 240 0.98

9 25 1.7e-06 0.00014 22.5 3.3 1 23 246 269 246 269 0.98

10 25 7.7e-05 0.0061 17.3 0.3 3 23 276 296 274 296 0.96

11 25 1.4e-05 0.0011 19.6 3.9 1 23 302 324 302 324 0.97

12 25 9.8e-05 0.0077 17.0 0.5 1 23 330 353 330 353 0.95

13 25 0.00057 0.045 14.6 1.9 1 23 388 411 388 411 0.96

14 25 8.8e-05 0.0069 17.1 0.3 2 23 417 438 416 438 0.95

15 25 0.18 14 6.7 0.4 1 23 444 466 444 466 0.97

16 25 2.3e-06 0.00018 22.1 0.6 2 23 473 494 472 494 0.96

17 25 6e-09 4.7e-07 30.2 0.4 1 23 499 521 499 521 0.98

18 25 4.3e-05 0.0034 18.1 0.8 1 23 530 553 530 553 0.96

19 25 0.0031 0.25 12.2 1.6 1 23 560 582 560 582 0.96

20 25 3.8e-07 3e-05 24.5 3.3 1 23 588 610 588 610 0.99

21 25 9.3e-06 0.00074 20.2 1.2 1 23 616 639 616 639 0.96

22 25 0.0079 0.62 11.0 1.2 3 23 646 666 644 666 0.96

23 25 0.00036 0.028 15.2 6.7 1 23 672 694 672 694 0.98

24 25 0.00033 0.026 15.3 0.3 1 23 700 723 700 723 0.95

25 25 2.5e-05 0.0019 18.9 0.8 1 23 729 751 729 751 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0025	0.2	12.5	0.1	3	21	19	37	17	40	0.88
2	25	0.0017	0.13	13.1	7.3	1	23	45	68	45	68	0.90
3	25	0.00072	0.057	14.2	2.1	1	23	74	96	74	96	0.97
4	25	0.00063	0.05	14.4	0.6	2	23	103	124	102	124	0.96
5	25	0.001	0.08	13.8	3.3	2	23	130	151	129	151	0.97
6	25	0.075	5.9	7.9	1.3	1	23	160	183	160	183	0.97
7	25	0.0025	0.2	12.5	2.2	1	23	190	212	190	212	0.96
8	25	9.6e-06	0.00076	20.2	0.9	1	23	218	240	218	240	0.98
9	25	1.7e-06	0.00014	22.5	3.3	1	23	246	269	246	269	0.98
10	25	7.7e-05	0.0061	17.3	0.3	3	23	276	296	274	296	0.96
11	25	1.4e-05	0.0011	19.6	3.9	1	23	302	324	302	324	0.97
12	25	9.8e-05	0.0077	17.0	0.5	1	23	330	353	330	353	0.95
13	25	0.00057	0.045	14.6	1.9	1	23	388	411	388	411	0.96
14	25	8.8e-05	0.0069	17.1	0.3	2	23	417	438	416	438	0.95
15	25	0.18	14	6.7	0.4	1	23	444	466	444	466	0.97
16	25	2.3e-06	0.00018	22.1	0.6	2	23	473	494	472	494	0.96
17	25	6e-09	4.7e-07	30.2	0.4	1	23	499	521	499	521	0.98
18	25	4.3e-05	0.0034	18.1	0.8	1	23	530	553	530	553	0.96
19	25	0.0031	0.25	12.2	1.6	1	23	560	582	560	582	0.96
20	25	3.8e-07	3e-05	24.5	3.3	1	23	588	610	588	610	0.99
21	25	9.3e-06	0.00074	20.2	1.2	1	23	616	639	616	639	0.96
22	25	0.0079	0.62	11.0	1.2	3	23	646	666	644	666	0.96
23	25	0.00036	0.028	15.2	6.7	1	23	672	694	672	694	0.98
24	25	0.00033	0.026	15.3	0.3	1	23	700	723	700	723	0.95
25	25	2.5e-05	0.0019	18.9	0.8	1	23	729	751	729	751	0.98

Sequence Information

Coding Sequence: ATGGAAATCCCCATCAAAGTGGAGGCATTCGAAATCCAAATCCGACGCATATTTTGCGAAATCTGCAAAGAAGCATTTCCCAACAGCATATCTTTGCGTCGCCACAACACTGAAGCTCATCGTCTTGGAAAATTCCTTTGTAGCGTCTGTAAGAAACATTTCAAACACCGGTCTAGTCTTAAAAAACACAAAGAACAACAACATAGTCGTGGACTACTCTACTTTTGTAATGTTTGCCAAAAATACCTCAAAACTTCAATTCAGTTACGACAACATCAACGAGATCATTCTAATCCTGATGGAATAACGTGTCCGGAATGTGGTCGCAAGTTTCTTTTTAGTGCTTCCTTTCGTAAACACATGTCTTTGCATAGAAATGGTCCTTTGAAGTGCGAGTTATGTTCGACGAGTTTCAGAGATCGTTCAAAGTTAAAATTCCACATGAAGAAACATGAAGAGAACTATGTTGCTCCAACTTTCACCTGCGAATTCTGCGAGAAAGTCTATTTAGTTGAACAGAACTTGCACCTTCACATTAAGAAAGTACACAGAGGGGAAACAGAGTCGCATGTTTGCGAAACGTGCGGAAAATCCATGGCGTCGAAGCAGAGTTTGATCCACCACCAGTACATTCACATGGGACAGAAACCCTTCGCTTGTCACTTGTGTGAAAAGAGTTTTGCTAAACCTGGACGTCTGACAGATCATATTAGGACTCACAACAACGAAACGCCGTTTAAATGTGAATTCTGTGATAAGAGTTTCCGCATGAAGAAAACTTTGAGATCCCACATGATGACTCTTCACGAAGGAAAGAAACACTTGTGTGCCATTTGCGGGAAGGCGTTGTCTAGTGCTGAAAGTTTGAAAGTACACACTAGAATGCACACTGGGGAGAAGCCGTTTGCATGTCACTACTGTGAGAAGAGTTTTGCTAAAAAAGAACACATGACGGTCCATCTGAGGGTGCACACGAAAGAAAAACCACACGTCTGTAAAATCTGCGGGAAGAGTTACACTCAGGGGACTTCTCTGTCGTTACATGTTCGAGCAGTGCATGAAAGGGACACTCCTCATAAGTGGGGATACGACTCTATAAAAATTGAAGAAGATGATGAATGGAAATCTCCAAAGTTACGGCCTGTTTCTAAAAACCGCCAATACAATTGTAAACTTTGCAAAGAAACGTTTTCTTCCTATTTACTCTTACGCAAACACCGCAAAGAGGCGCACAATCCAAAACCTCTAAACTGTCCAGTTTGcaagaaaatgtttaaatacgAGTGGACTTTAAACAAACACGTTGAAATTCACAACGACCGGAAAGGTTTTTTTTGTGAGGAATGTGAAGAGAATTTGGAATCCGAAGAGAAATTTCAGGAGCACAAAAAAATTCATAACGCTCCTTCCGGTTTAATCTGTCCTGATTGTAAGAAAGTCTTCGCGTCGCGTTCTTCCTTTAGAAAACACCGTTTGATACATAAAGGAGTACGATTTCCATGCGATGAATGTGGGAAGACTTTCAGTGACCCCAGTACGTTGAAAGTGCACATGAAAAAGCACGAGAAGAATTTTGTACAGCCTAAATTTGCTTGTGATGACTGCGAAAAAGTGTATTCTGTAGAGTACAATTTGAAGAATCACATTGCTAAGTGTCACGAAGGCGAACCTAAATGGCACATTTGTGAAACTTGTGGGCGAAACATGTCTTCTAGAAAGAGTTTGAGGGATCACCAGATGATCCATACTGACGAAAGACCGTATAAATGTGATCAGTGTGAGAAGAGCTTTAGGAGGAAAGAACAACTGACTGATCATAAAAGAACACATACCAAAGAGAAACCCCACGTGTGTGAAATTTGTAATAAAGCTTTTACTATGAGGAAGAACTTGAAGGAACATATTAGCGTGCGCCACGAAGGAAAACGACATTTGTGTGATATTTGCGGTAAAGCAATGGCTTCTACTACTAGTTTGATGAATCATAAGAAAACTCACACGGGGGAAAAACCTTTTGTTTGTAATTTCTGTGGGAAACGATTCACAAAGAAGTATCATTTACAGTGTCATATTAATGTACATACAAGGGAGAAACCGTACGCATGTAAGCTTTGCGATAAGAGATATACTCAAGGTACGTCTTTGCAATTGCATGTACGAGCTGTACATAGTCAGGAAAGACCTTACGTTTGTGATATTTGTAATAGAGGTTTTATAACGAAAACGTTGCTGACAATGCACAAAAAATCGCATTGGTTGAGGGATTATGACCAAAAGAGTTTAATAAGTGAAGAAACACTAGAAGGTCTTCACGAAAATGGAAACCGCGTTCATAAAGGACGAAAACAGCGAACGAAAAACAGAGAATGGGTGAGAGTCCGCGAATTTGACTCTCCGCAGGAAGCTGAAAGCTACATCAAAATCCAAACCATGTGGAAGAAATGCTCAACGAAAAAAACGATCGGAGGACACAAAGTGGAATATCGTTGTGTTTATGGTAAATACCGAAAGCAAGAATGTCCTGCTAGGATCTACTTAATGTATCATACAACAAGCTCAAAAGTTACGATGTTTTCAACTGAGCAAGAACACAACAATCACAAAGATTCAATGTTTGGTTTAGAGAACGATATTAAAGTTTTTGTGTCAAAGTTGTACGATATTGGTATCAAAAAACCGAACGCAGTCGTGGGGGCGATAAGAAGAGCGAATTTGAAGCAGCCTGCCAAGGCTAAATTGGTGACTTTCTTAAAGCAGTTGAGGAAGAAGAAATAG
Protein Sequence: MEIPIKVEAFEIQIRRIFCEICKEAFPNSISLRRHNTEAHRLGKFLCSVCKKHFKHRSSLKKHKEQQHSRGLLYFCNVCQKYLKTSIQLRQHQRDHSNPDGITCPECGRKFLFSASFRKHMSLHRNGPLKCELCSTSFRDRSKLKFHMKKHEENYVAPTFTCEFCEKVYLVEQNLHLHIKKVHRGETESHVCETCGKSMASKQSLIHHQYIHMGQKPFACHLCEKSFAKPGRLTDHIRTHNNETPFKCEFCDKSFRMKKTLRSHMMTLHEGKKHLCAICGKALSSAESLKVHTRMHTGEKPFACHYCEKSFAKKEHMTVHLRVHTKEKPHVCKICGKSYTQGTSLSLHVRAVHERDTPHKWGYDSIKIEEDDEWKSPKLRPVSKNRQYNCKLCKETFSSYLLLRKHRKEAHNPKPLNCPVCKKMFKYEWTLNKHVEIHNDRKGFFCEECEENLESEEKFQEHKKIHNAPSGLICPDCKKVFASRSSFRKHRLIHKGVRFPCDECGKTFSDPSTLKVHMKKHEKNFVQPKFACDDCEKVYSVEYNLKNHIAKCHEGEPKWHICETCGRNMSSRKSLRDHQMIHTDERPYKCDQCEKSFRRKEQLTDHKRTHTKEKPHVCEICNKAFTMRKNLKEHISVRHEGKRHLCDICGKAMASTTSLMNHKKTHTGEKPFVCNFCGKRFTKKYHLQCHINVHTREKPYACKLCDKRYTQGTSLQLHVRAVHSQERPYVCDICNRGFITKTLLTMHKKSHWLRDYDQKSLISEETLEGLHENGNRVHKGRKQRTKNREWVRVREFDSPQEAESYIKIQTMWKKCSTKKTIGGHKVEYRCVYGKYRKQECPARIYLMYHTTSSKVTMFSTEQEHNNHKDSMFGLENDIKVFVSKLYDIGIKKPNAVVGAIRRANLKQPAKAKLVTFLKQLRKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -