Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: RTase
Assembly: GCA_037074685.1
Location: JAYKKO010000028.1:2581107-2591505[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.03 2.9 9.5 0.2 1 21 1010 1030 1010 1031 0.94

2 7 0.11 11 7.7 1.2 1 23 1047 1069 1047 1069 0.98

3 7 0.031 3 9.4 0.7 1 23 1075 1097 1075 1097 0.98

4 7 0.00013 0.012 16.9 3.1 1 23 1103 1125 1103 1125 0.99

5 7 0.00037 0.036 15.5 0.3 1 23 1131 1153 1131 1153 0.96

6 7 0.0014 0.13 13.7 5.6 1 23 1159 1181 1159 1181 0.98

7 7 0.0066 0.63 11.5 3.0 2 23 1207 1229 1206 1229 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.03	2.9	9.5	0.2	1	21	1010	1030	1010	1031	0.94
2	7	0.11	11	7.7	1.2	1	23	1047	1069	1047	1069	0.98
3	7	0.031	3	9.4	0.7	1	23	1075	1097	1075	1097	0.98
4	7	0.00013	0.012	16.9	3.1	1	23	1103	1125	1103	1125	0.99
5	7	0.00037	0.036	15.5	0.3	1	23	1131	1153	1131	1153	0.96
6	7	0.0014	0.13	13.7	5.6	1	23	1159	1181	1159	1181	0.98
7	7	0.0066	0.63	11.5	3.0	2	23	1207	1229	1206	1229	0.94

Sequence Information

Coding Sequence: ATGGCCACACTAAAAGTAGCAACATGGAACATAAACGGATTGAGTAAACACAAATATGATGTACAAACTTTATTGGAACACGAAAATATTGACATACTTCTTGTATCTGAGGCACACTTAACACGAAATTACAATATTGGGTTAAAAAACTACAGCACATATGCGACATTTCACCCGGATGGAACAGCTCATGCGGGCACAGCCGTAATTATCAAAAGTCATATCAGGCATGAGATCCTTAAGGAGTATAAAACAGAACCAATCCAAGCAACAACAGTCATGGTGCAAGATAAACATGGCTCAATAGCGCTGTCAGCTGTGTACTGCCCTCCCAAACACAATCTAAAAGAAGAAGCATTCACAACTTACTTCAAAACTCTCGGAGACAGGTTCTTATGCGGTGGTGACTGGAACGCTAAAAACGTCCACTGGGGATCACGATTAACCTTACCTAGAGGCCGAGAAATGAAAAGAAGCTTAGACAAAAACAAACTATATGTACTGAGTTCTGGTGAACCCTCGTATTGGCCTACAGACTCTAATAAAACACCAGATCTCCTAGATTTCTTTGTATATAAAGGACTACCAAACCATTACTTAAGTGTCGAGTCTTGTCTAGACAGCAGCTCAGATCACACACCAGTAATAGCCACAATAAGTACTACCATACTTGAAAGACCAGTGAAGGAGCGTTTACACACAAAAAACACTGATTGGAATGCATTTAGAGAATATATTGACGAAAACCTCAACCTAAAGGTGACACTCAAAACAAAAGATGACATCGAGAAGTGTGCAACAACATTGACAAACCTAATACAAACTGCAGCCTGGAAATGCACACCGGTTACAACACCAAACCAAGGAAATAGGAACGTACCCAAGGATATAAAAGCAAAGATCTTAGAGAAGAGAAGGCTTAGAAGAGTATGGCATTGTAGTCGACATCCCCAGGATAAAAGAGCATTTAATAAAGCAGCAGCCAACCTGAAACAATACCTTAAAGATATTGAAGAAGAAACACTACAGGATAAACTAGTGAACTTGAATCCTCAAGCAAAAAATGATTACTCGCTCTGGAAAACAGTCAAAAGTAGTAAGGTTGCTCCTCGGGTTGCACTGCATCCCATTAAAAATAGAGACACCACTTGGGCTAGAACGGATAAAGAGCGAGCTGAGGCATTTGGAGAATTCCTGCATGGTGTCTTTACTCCGAATGGCGGCGATGCAGAAACCGAAAAAGAAATACAGGACTACCTGGAAACTGATTTACAACTAAGCCTCCCAATTCTAAGCTGCTCACCCCGCGAAGTTCATAGAGAAATAAAAGGACTGGAGTTAAATAAAGCTCCTGGCTTTTGTCTGATAACAGCCGAAATTTTGCAACAACTTCCTAAAAAAGCTATAGTTGGTATAACACAGCTTTTTAATAGCATATTTAGGATTGGACATGTCCCAAGAATATGGAAGATATCGGAGATCATCATGATCCCAAAGCCTGGCAAACCCCCCCACCTCGTGTCCTCCTACAGACCAATTAGTCTCTTACCAACCTTGTCAAAACTCTTTGAAAAGATCATCTTACGAAGGCTAACGCGCATACTCAACGAAAACGAACTTATCCCTGAACATCAGTTTGGCTTCAGAATGGGCCACTCAACCATAGAACAGGTTCATCGTGTTGTCAATAAAATAAGAGAATCTCTCGAGAAAAAGCAGTACTGCTCAGCTGTCTTTCTCGACGTACAACAGGCGTTCGATAAGGTTTGGCATTTAGGCTTGCTTTTTAAAATGAGGACTCAATTGCCACATAGCTTGTATTTGCTGTTGAAATCTTACTTAGAAGATAGAATATATAGAATTAAAGTCAATGACTCCTACTCCATCTTTTATGACATAAAAGCCGGGGTACCGCAGGGTTCCATCCTGGGTCCTACTTTGTACCTTATGTTCACTGCAGACATACCCACAACAGAAAACGTCCTATCTGCCACCTTCGCTGATGACACTGCTGCACTCTGCAACCATGAAGACCCAAATGTGGCATCCCTGGCTCTGCAAAGCCACCTGAATAAGGTCCACAAATGGATGGAGAAGTGGCGCATCAAGGCAAGTTCTGGCAAATCAGTACATGTCACCTTCACCTTGGGGAAGGCAAACTGTCCTGCAATTAGACTTGGCAACGATGTCCTGCCCCATCAAGACTCTGCTAAATACTTGGGTTTGCACCTTGACAGGAAGCAAACATGGAAGACTCATATTCAGAAAAAACGCGAAGAATTGAACATACGGCTCAGAAACTTAGAGTGGTTAATGGGCAGAAGATCTCATGTCACtatggaaaataaaatgctCATCTATAAAACCATAATCAAACCAGTTTGGACATATGGAATTGAGTTATGGGGAACAGCTAAAACCTCAAATGTGGAGATCATACAACGGTTCCAGAACAAAGCACTCAGAATGATAACAGACGCACCTCTATTCATCAAAACCAGTGAATTACATGAGCACACACAGATGAAAACAGTAAGGGAAGAAGTCGCACACAGAGCAAGAACATATAAAGACCGCATAAAAGTACACTCTAATACCCTGGCAACAGCACTATGTCATATACCAGATCCAACGCAGAACCAAAGCCTCCCACAAGACCAAATGTATGTATACCCAGGCCACGTATCTTCAATACCAGCACTGAACACCATAGACCTCTACCAGAGACAACAACAAAACTACCCCCAAAATTACACCCCACCCGCCAGGGAAAATCCCCAAAACCTAGTCATCCATAGACAATTCGAAAATCACAGTCCCTACGAGGACATCAAGAAAGATTTGGTGATTGACAGTGATAAAGTAGAAAACTGTCAACCGAAAACGGAGGAgccaaaagaaaatttaaaaccaaatgaGAATAAAATTTACTTCCAAGAGTATCCCAGTCAGAACTTCGAGGCCGCCAAGAATCAGAAGACAGATGACGCCAATTTGGTGTCAAAGGAATTTGATATAAGGGGCGAATATATTTGCTTTAAATGTAGTGTCATATTCCCTTCAAAGAGATTACTTAAGCAACACGCTAAAGTGTGCTACAACAATGAAGGTGAGGAGAATAGTGAGAAGTTAGGTAAATTCAGTTGTTCCCAATGTTCCTATAGATGCCAGGCGCCTGCTACTCTAAAAATCCACGAAAGAGTTCACTCAGGCGTTAAACCTTATTCGTGCAACTTCTGTAGCTACAAATCTGGCCAGAAAAACAATGTAGCCAAACATATTCTAGTTCATATGAAGCAAAAACCTTTCAGATGCCAGTACTGCGACTACCGTTGCGCGCAAAAGAATAACTTAGTGGTTCACGAAAGGACTCACACAGGGTACAAACCTTTCGCCTGTCCTTATTGTGAATACAGAACTGTTCAGAAACCGAATCTTGTTAAACATATGTATTTGCATACGGACCAAAAGCCGTTTAGCTGTGATATGTGTAATTATAGATGCGTTCAGAAGACTAATTTGACGAAACATAAACAGAGGCATCTTAATGAGAAAGATGGGGAGTCTGTTGATGTGAAAACTCAAGTGAAACCGTACAGGCCTAGGCAGAAGACAGTGAAATGTCCTCATTGTGCGTATAAATGTGTTCAGAAAGCCAGCCTAGAGAAACATATTATGTTTAAGCATAATGATTTACCTGATCAAGGATTAAAAAGTGCTGAGTTTATTGAGCAAGTTGGTAAGGATAATTTTAGTGAAGGGGtgaatttaatgaaagtcaatGATGTGAGTGAGGAGCCGATACAGAATTTAAGTGTTAAGAAAGATACGGAGATGTTTGATGAAATTCAACGTATGAAGGATTCGTTACAAGTGGAGTCATAG
Protein Sequence: MATLKVATWNINGLSKHKYDVQTLLEHENIDILLVSEAHLTRNYNIGLKNYSTYATFHPDGTAHAGTAVIIKSHIRHEILKEYKTEPIQATTVMVQDKHGSIALSAVYCPPKHNLKEEAFTTYFKTLGDRFLCGGDWNAKNVHWGSRLTLPRGREMKRSLDKNKLYVLSSGEPSYWPTDSNKTPDLLDFFVYKGLPNHYLSVESCLDSSSDHTPVIATISTTILERPVKERLHTKNTDWNAFREYIDENLNLKVTLKTKDDIEKCATTLTNLIQTAAWKCTPVTTPNQGNRNVPKDIKAKILEKRRLRRVWHCSRHPQDKRAFNKAAANLKQYLKDIEEETLQDKLVNLNPQAKNDYSLWKTVKSSKVAPRVALHPIKNRDTTWARTDKERAEAFGEFLHGVFTPNGGDAETEKEIQDYLETDLQLSLPILSCSPREVHREIKGLELNKAPGFCLITAEILQQLPKKAIVGITQLFNSIFRIGHVPRIWKISEIIMIPKPGKPPHLVSSYRPISLLPTLSKLFEKIILRRLTRILNENELIPEHQFGFRMGHSTIEQVHRVVNKIRESLEKKQYCSAVFLDVQQAFDKVWHLGLLFKMRTQLPHSLYLLLKSYLEDRIYRIKVNDSYSIFYDIKAGVPQGSILGPTLYLMFTADIPTTENVLSATFADDTAALCNHEDPNVASLALQSHLNKVHKWMEKWRIKASSGKSVHVTFTLGKANCPAIRLGNDVLPHQDSAKYLGLHLDRKQTWKTHIQKKREELNIRLRNLEWLMGRRSHVTMENKMLIYKTIIKPVWTYGIELWGTAKTSNVEIIQRFQNKALRMITDAPLFIKTSELHEHTQMKTVREEVAHRARTYKDRIKVHSNTLATALCHIPDPTQNQSLPQDQMYVYPGHVSSIPALNTIDLYQRQQQNYPQNYTPPARENPQNLVIHRQFENHSPYEDIKKDLVIDSDKVENCQPKTEEPKENLKPNENKIYFQEYPSQNFEAAKNQKTDDANLVSKEFDIRGEYICFKCSVIFPSKRLLKQHAKVCYNNEGEENSEKLGKFSCSQCSYRCQAPATLKIHERVHSGVKPYSCNFCSYKSGQKNNVAKHILVHMKQKPFRCQYCDYRCAQKNNLVVHERTHTGYKPFACPYCEYRTVQKPNLVKHMYLHTDQKPFSCDMCNYRCVQKTNLTKHKQRHLNEKDGESVDVKTQVKPYRPRQKTVKCPHCAYKCVQKASLEKHIMFKHNDLPDQGLKSAEFIEQVGKDNFSEGVNLMKVNDVSEEPIQNLSVKKDTEMFDEIQRMKDSLQVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -