Gpyl001916.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- RGM1
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000002.1:1070104-1079981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0026 0.25 12.8 1.2 1 22 504 525 504 528 0.90 2 12 0.0021 0.2 13.1 3.1 1 23 542 565 542 565 0.97 3 12 0.049 4.7 8.8 1.2 1 22 570 591 570 594 0.87 4 12 6.4 6.1e+02 2.1 0.5 2 23 615 639 614 639 0.82 5 12 0.014 1.4 10.5 2.1 3 21 646 664 645 669 0.94 6 12 9.5e-05 0.0092 17.3 2.4 1 23 724 745 724 745 0.98 7 12 2.2e-06 0.00022 22.4 0.2 1 23 751 774 751 774 0.97 8 12 0.00039 0.038 15.4 2.3 2 19 801 818 800 820 0.94 9 12 0.11 10 7.7 1.7 2 23 827 850 827 850 0.94 10 12 0.096 9.2 7.9 7.7 1 21 857 877 857 879 0.95 11 12 0.0033 0.32 12.5 2.2 1 21 885 905 885 910 0.92 12 12 3 2.8e+02 3.2 0.1 1 23 916 939 916 939 0.91
Sequence Information
- Coding Sequence
- ATGCTGTCGCCACGCGAGGACGACGACGATGACAGCCATCTCTGCATCAAGTGCAACGCTACTATCGTCGGCCTCGACAACTACGTGAAACACAGGAAAGAGAGATGCGGGAAACTATCCAAAACTGTCTCTTCTAAATCCGACATCCCCAGCATCGACAGTCTAGATCCCACTTACAGTCTCGGCGCTGATGTTTTCTTCCAATCCTTAGAACTCCAAAGCAGTGTCAAGAAAACTTCCCTATCCAGGTTGACACCGCCTATCCCAATATCCAAAGCAGTTTTAGACCCAAAAACTACGTTGGTTGAAGCTTCCACTTCTCGAGATCTGCCACGAATGAGTCCATTGACTAATTTAAGAGATGAAGACTGGATTGGAGAACACAGTTTGAGAATTGGCAATAATGAAGACAATCAAACGAAGTTAATTAACGCTGTTGCTAGTATCAGTGGGAATGTTAAGAAAGTAATACCAACTTCTACGTATAGTATCTCCACAACGTATAACGACTACAAGGGGGAGGTAGATTTTGATGAATCTGATGATTCTGATGAAGAAGATGACGAAGAGGTGCATACGAGCGAGAAATGGAAACCTCCTCCGAATTATACAGGAGGAAAATGGCGCCCTGCTTCCCCTGACCACGAAGAATGGGACATAAGAGAAGAGCAAGAGCATACCGGTGGTAAATGGAAGCCAATAATGGTAGATTCAAATGAAAGAGATGACGATTATGATGCCCCACCCCCCGGACATACTAAAGGCAAATGGGTGCCAGGTCACGAAAAGACACAAATAATGCAAACAACCATACAAAACAAAGGATCTGTCCAGTACTGGTGTGGACCTTGCAATCGGCGCTTAGGTTCGCGAGCGATTTATGAGAAACATTTAATGTCTAGTTTGCACATGAGGAAAGTTTTACCTGAACATGAATTAGAGTTTTCCGGACATTTGGAACCAATGCGTCCTATCGATAAAAGAGCGTCACGTCCTTCTCGATTTACCAACGACACAATATATACTCCGACAGAAAGAAAAAAGGAGAAGACTCCTAAAGCAAagttaaatgtcaaaattgaaaagaaaaagagAAAAAGGAAGCCCGTATTTGTGCACTGCTCAGGGTGCAAATCTCGGGTAAGGTTACATTTAATGGGAAAGCACTTGATTTCCCATTACCACTTCCGCAAAGCGACTGACATCAAAAGCGAAGCATATCAGCAACTGATCCTAGATAACATAGATGCCATAGTTCATCAGTCACCGTTTCAATGCAGCCCTTGTAAGTTTTACACAAATTGGCTCTCTAATTTCATGCAACACTGGTATTCTGAAGAACATGATAACAAGACTTCGTCATTAGATGGTAAATTCTGGTGTTCGTTCTGCAAATTTGAATGTGGATCATCCCAAGATATGTTGCAACACATGTCAGGTTCTGATCACAGTGAAGTGGTGGCTGTAATAAATCGATCGATGCCTATAATCATCCGACAAAAGACTATATTCAAATGCGAGTCTTGCAATCAAGAGTTCCGATACAATATCGAGTTAAAGCGACACAGCCTTAGAACCGGACACAAATTATCTCATACAGCTTCTGACGATTACCAAGAACTTCACAAGTGTCAGTTTTGCAAAGCTAAATTTAAATCCTCAGTCACTCTTGCAGCTCATTTGAAGTCCAGACATAAGCAGAAGGAATTCCTATGCTTGGTCTGCGAAAAGAAATTTAATACTGCAGAAGACGCTAAGCATCATCGATACACTTTGGAACACAGAATTAGGAAACAAgagaaaatcaaacaaaaaggGATAGTGGTCAAAGATATGAGTAAGAAATGTCCATACTGTACCGACACCATCATTTTGAAAAACGTTTTGGAACTTAAAGAGCATATTCGAATTGAACATCCTCATATCAAAAAGAATTGCACTAAATGCGGAATGTCATTCATCTTCTCCCAAGAAGTGACTCGGCACATAAAACAAAAAGCTTGCCACTTCCCTAGCACTAGCAACCTTAACTCCTCAATCGTGTGGAATTGCAGTCAATGCCTCTTCGCCACCGACTCTCAGGCCGAATGCTACTTTCACGAGGCCTTACACGGAGAGTCTATCAAGGAGTTCCAAAAAGTAGGAGAAAAAGAGAAAGTCATTTTGAAATATGAGTGTCCCCTTTGCTCCAAAAGATTCAGGAAGCAATCCCTCCGACAGCATTTGAGGCAGCACACTTATGAACGGCCTTTTGTTTGCAACATCTGTGGATCAAACTTCTCGAGGCAGTCAAATCTAGCTAGTCACGCTAGGAGTGCGCATGGGCAAGGCAGTGTAGGGAAAGTGgacaaactgaaaaaaatagtGATCCCGGTGGAACATTCGTTGAAGGACAGCTGGAGGTGCTCGAAATGTTCGAAGGTTTTCAGCAATCGGAGTGCGCTTAGCCGGCACTCTTGTGATGCAGAGGAGCGGCGCCGTTGCCCACACGAAGGTTGCGCTTGTGTCGCTGCCTCTCCTGCACATTTAGCGAGACATCGCCGCACACATGGGGAAAAAGTGAAACATCATCAATGCACCCTGTGTCCGTTCAAGACTGACCAATCTAGTCACATGAAGAGGCACATGCGGTGCCACGAAGGCTCGAAACCGTATTTTTGCCCGCACTGCGAGTTTACCTGTGCTAGCCTGGAAAACCTTCGCAAACATGTCCTGCGCAGCGGCCTGCACGCCGGCCGACACCTGTACCAGTGCCGCGCATGCGCGTACCAGACGAACATGGCAGCCGAACTACGTAAGCACCTCGTGCAAGCTCACGCGCCAGAGTTCGACGCGAAGAGCGCCATGCAGGCGGTGAAAAGATTTTTGATGAAGGACACATAA
- Protein Sequence
- MLSPREDDDDDSHLCIKCNATIVGLDNYVKHRKERCGKLSKTVSSKSDIPSIDSLDPTYSLGADVFFQSLELQSSVKKTSLSRLTPPIPISKAVLDPKTTLVEASTSRDLPRMSPLTNLRDEDWIGEHSLRIGNNEDNQTKLINAVASISGNVKKVIPTSTYSISTTYNDYKGEVDFDESDDSDEEDDEEVHTSEKWKPPPNYTGGKWRPASPDHEEWDIREEQEHTGGKWKPIMVDSNERDDDYDAPPPGHTKGKWVPGHEKTQIMQTTIQNKGSVQYWCGPCNRRLGSRAIYEKHLMSSLHMRKVLPEHELEFSGHLEPMRPIDKRASRPSRFTNDTIYTPTERKKEKTPKAKLNVKIEKKKRKRKPVFVHCSGCKSRVRLHLMGKHLISHYHFRKATDIKSEAYQQLILDNIDAIVHQSPFQCSPCKFYTNWLSNFMQHWYSEEHDNKTSSLDGKFWCSFCKFECGSSQDMLQHMSGSDHSEVVAVINRSMPIIIRQKTIFKCESCNQEFRYNIELKRHSLRTGHKLSHTASDDYQELHKCQFCKAKFKSSVTLAAHLKSRHKQKEFLCLVCEKKFNTAEDAKHHRYTLEHRIRKQEKIKQKGIVVKDMSKKCPYCTDTIILKNVLELKEHIRIEHPHIKKNCTKCGMSFIFSQEVTRHIKQKACHFPSTSNLNSSIVWNCSQCLFATDSQAECYFHEALHGESIKEFQKVGEKEKVILKYECPLCSKRFRKQSLRQHLRQHTYERPFVCNICGSNFSRQSNLASHARSAHGQGSVGKVDKLKKIVIPVEHSLKDSWRCSKCSKVFSNRSALSRHSCDAEERRRCPHEGCACVAASPAHLARHRRTHGEKVKHHQCTLCPFKTDQSSHMKRHMRCHEGSKPYFCPHCEFTCASLENLRKHVLRSGLHAGRHLYQCRACAYQTNMAAELRKHLVQAHAPEFDAKSAMQAVKRFLMKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076021;
- 90% Identity
- iTF_00408827;
- 80% Identity
- -