Gpyl027414.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000034.1:3412509-3423251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00012 0.012 17.0 4.2 2 23 1059 1080 1058 1080 0.97 2 7 0.39 38 5.9 3.8 2 23 1088 1108 1087 1108 0.97 3 7 0.00049 0.047 15.1 0.8 1 21 1114 1134 1114 1139 0.94 4 7 0.0022 0.21 13.0 0.3 1 23 1147 1170 1147 1170 0.94 5 7 0.00012 0.012 17.0 0.2 1 23 1176 1199 1176 1199 0.97 6 7 0.00017 0.016 16.6 1.3 1 23 1209 1231 1209 1231 0.96 7 7 0.0006 0.058 14.8 3.0 2 23 1238 1260 1237 1260 0.96
Sequence Information
- Coding Sequence
- ATGGCCGACTGCATGGTTGACATTGCGGTGATTGCGGAGCCATACTCCATACAGAATGGCTGGCTGGGTGACTGCGATGGCACGGTCACAATCGTGCGGCGGGTAAGCACGGACTCCCCTCCCCTCTCGCTGGTAGAGAGAGGATCGGGATACGTGGCCGCTGCATGGAGCAATCTAGTGGTCATCGGGATTTACTTCTCGCCGAATCGACCACTACAGGACTTCGAGGACTTTCTCGGGGTCCTCACTGCGGTTGTAGGCAGATCCGTGTCGCAGAGTCAGGGTCGTGGTCTTCTGATAATGGGCGACTTCAATGCAAAGTCGTTCGCCTGGGGCAATCCggttgcctcctgcaacagaaggGGCCCATTGGTCGAGCTCTGGGCTGCTGCTTCGGGCCTATCCCTCTTAAATAGGGGTTCGGTGTGcacgtgtgtgcgacagcagggagggtccgtggtggatatctccttcgccacccctgctctcgcaacACGTGTACGGAATTGGAGAGTCGACCTGATGGAGACACTATCAGATCACCGATAcattcggtttgagatctccACAGGCAGTCCGGCGGCTCGGCGTAGTCTTCCCTCGCCTTTCCCCAGGTGGGCATTATCCCGCCTGGATCGGGACGTTGCAAAAGAAGCCGCCTTTGTCCAGGACTGGCTCACTGCCCCCTTCACGGGCCCGGATGTCGATCGTTGCGCCTCCCAGCTGAAGGAgtccctgaccgaggtgtgcgacGCATGTATGCCGCGGTCACGCCGTCCGCCTCCTCGCAGAGCGTGCtattggtggtcggaggagctcgccgACCTCAGAGCGAGTTGCACTGCAGCCCGGCGCGCCTACACCCGCAGCAGACGCCGCGCTCGTCGAGACCCGAATAATGAGGCACTCTTATACGCCTCCTATGTTGAGGCTAAGCGGGTTCTCAAATCCAGCATCGGGGAAGCAAAAGACCGGGCTCGCGCCGAGATGCTCGAGGCTTTGGACagtgatccgtgggggagaccgtacagggcggcGCGCAACCAACTGCGCCCtattggtcccccactcacagagactCTCGAGCCGGCTGTGTTGGGAGAGGTTGTTTGCGGGTTGTTTCCTGCCGCGTCCGCGTTCGTTCCGCCGGCAATGGTTCGGCGAGGAGTTGTTTTGCCCGAAATACACGCCCCACAAATCTCCGAGGAGGAGTTCGATGTGGCGACCTTCTGCCTACGCGCGAAAAAAACGGCACCGGGCCCTGATGGGGTGCCCGCAAAAATTGTCGCCTTGGCTGCAATACAAATGGGAGAAAGGCTTAGGGGACTGTTCGACGCGTGTTTTAGcgtcgaaaagttccctaagCCCTGGAAGCAGGGCCAACTCTGCCTGCTTAGAAAGTATGGACGCCCAATTGACTCACCCTCGGCATACCGACCTATCGTCctcttggacgaggtcggtaaattatttgaaaaaataatcgcgGCACGAATTACCGACCACCTTCGGGAGAATGGGCCGGATCTCTCCGACAACCAGTTCggctttcgggcagggcggtccacaaTAGACGCGCTGTTTCGCCTCAAAACCGCGGTCCGtcaagcatgggaggaggggcgtggagtattggccatatcattcgatatagccaacgcaTTCAACTCCATTCCCCATCCCACTATCCTTGAGGCCCTTAAACATCACGGGCTGCCAAGTTATCTTAGGGCAATTTTGAAAGACTATTTACAGGGAAGGGAGgtcctttttgttaataaacaagGAATGGTCTGTCGTCGGGGCGTCGAATCCGGTGTTCCACTGGGTTCtattttggggcccctcctgtggaacatcgggtatgacTGGCTGTTGCGGGGTTCCCTCCTCCACGGCatgggtgtcatttgttatgccgacgacacccttgtcacctgccgggggagggactttcggTCCGCCGCTTGTTTGGCCTCTGCGGGGGGCAGTCTAGTCGCCAATAGGATAGGTCGCCTAGGCCTCAAAGTGGCCCTAGAGAAGACGGAGGCAATTTATTTTCCTGCGCCCCGTCAGCGTCCACCATCATCTCTGGACGCTCACATCGTAGTTGACGGCGTCCGTGTGCAGGTCAAgacccagataaaatatctgggtctAATCCTTGACGCGCGATGGAACTTCGTTCCTCATTTTAGCGAGTTGTCGTCGCGCCTCCTGAAATCCGCGGGCGCCCTTGGATGGCTCCTCCCAAACCTGGGTGGTCCAAGGGCTAAATgcaggcggctttacgccggcatcttaaagagtatggccctttacggggcccctatatgggctgactcccttaataaaagggagaacgcagggaacctcagacggccccagagggccatagcacagagggtgtcccgcgcgtaccgcacagtcgggcatgcggccgcgtgcgccctggctgagacacctccgtgggatctggaggcccatgccttggcgaccgtctaccactggcgtgcagtaagaagaggggcaggggttcgattttaccctgaggacctcgccagagtcaagcgggaggcgaaggaaaatctccgcattgcatgggcgcagagtttggcagagtcgcagtatggccaatggactctggaggcgctcagccctgtttttgagggctggcttgagaggaagttcggcttcctctcatatcggttggtgcaggtgctgtccggacacggttgtttccggaggtacctgcaccgaatagggcgggaagagacgcccgtctgcgcccactgcgggctagaagatgacacggcggagcacaccttggtttcgtgcccgtcgtggacagaacagagagccgccctaacggccgttataggggccaatctctccctcccgagcatcgtccaagccatgctcgggggcgaggacgcctgggcggcggtagcctccttctgcgagaacgtcatctcgcagaaggaggaggcagagcgccaaagggaggacgacccgtcctccccagcgctaagaaggcgcagaagagccagggcgcggcggcgctacgaccgcgccgttcttccgcacggagaccagttggctggtggtgtgagggcaccccaGAACTCTCGCGCGAGAAAGAACCACGTGGCCAGGTTCCATAGAGAAGGTCTTCAGTGTGACCATTGTAAGAAACGGTTCGTAAACAGAACCACACTGACTACACATCTCAAGCTTCATGAGGGTCCTCTCCCGCGCAAGGAATGCCACATATGCCACAAGATGGTCAGAGTAATCCAGCTCAAATACCACATCCAGAGGCACGAAGACAAGAGTCGTTATGAGTGCGTGGAGTGCCAGAAGGTGTTCTCTCACCTGGCCACGTACCAGGCTCACCTGAAGTACAGCCGCGCGCACGCCAGCGACGAGGTCTTCAAGTTCCCCTGCCCGATGTGCAATAAAGGGTACCCAACTAAAGAGGCAATGCAGGACCACTTCAACTACCAGCACTTGGGGAAGACGGCACACAAGTGCCCAGTCTGTGATAAGCCTATAGCATCTCGAGCGAACGTGGAAAAGCACATGATGCGTGTCCACGGAAAGAAGAAAGAGAAACCTCGCACACACGTGTGCACCACTTGTAGGAAGGCGTTTACGGACAGGAAAGCGTTGAACCAGCACTTGGTGATACACTCTGGCGAGCGGCCGCTCTCGTGCGACGTCTGCCAGCAGACGTTCAAGCACAAGGCGTCGCTGTACACGCACAGGAAGCGCGTGCACAAGGTGACGCCGCAGCGTCGCGCGCTGCAGTACATGGAGGCCGAGCGTGCCTGA
- Protein Sequence
- MADCMVDIAVIAEPYSIQNGWLGDCDGTVTIVRRVSTDSPPLSLVERGSGYVAAAWSNLVVIGIYFSPNRPLQDFEDFLGVLTAVVGRSVSQSQGRGLLIMGDFNAKSFAWGNPVASCNRRGPLVELWAAASGLSLLNRGSVCTCVRQQGGSVVDISFATPALATRVRNWRVDLMETLSDHRYIRFEISTGSPAARRSLPSPFPRWALSRLDRDVAKEAAFVQDWLTAPFTGPDVDRCASQLKESLTEVCDACMPRSRRPPPRRACYWWSEELADLRASCTAARRAYTRSRRRARRDPNNEALLYASYVEAKRVLKSSIGEAKDRARAEMLEALDSDPWGRPYRAARNQLRPIGPPLTETLEPAVLGEVVCGLFPAASAFVPPAMVRRGVVLPEIHAPQISEEEFDVATFCLRAKKTAPGPDGVPAKIVALAAIQMGERLRGLFDACFSVEKFPKPWKQGQLCLLRKYGRPIDSPSAYRPIVLLDEVGKLFEKIIAARITDHLRENGPDLSDNQFGFRAGRSTIDALFRLKTAVRQAWEEGRGVLAISFDIANAFNSIPHPTILEALKHHGLPSYLRAILKDYLQGREVLFVNKQGMVCRRGVESGVPLGSILGPLLWNIGYDWLLRGSLLHGMGVICYADDTLVTCRGRDFRSAACLASAGGSLVANRIGRLGLKVALEKTEAIYFPAPRQRPPSSLDAHIVVDGVRVQVKTQIKYLGLILDARWNFVPHFSELSSRLLKSAGALGWLLPNLGGPRAKCRRLYAGILKSMALYGAPIWADSLNKRENAGNLRRPQRAIAQRVSRAYRTVGHAAACALAETPPWDLEAHALATVYHWRAVRRGAGVRFYPEDLARVKREAKENLRIAWAQSLAESQYGQWTLEALSPVFEGWLERKFGFLSYRLVQVLSGHGCFRRYLHRIGREETPVCAHCGLEDDTAEHTLVSCPSWTEQRAALTAVIGANLSLPSIVQAMLGGEDAWAAVASFCENVISQKEEAERQREDDPSSPALRRRRRARARRRYDRAVLPHGDQLAGGVRAPQNSRARKNHVARFHREGLQCDHCKKRFVNRTTLTTHLKLHEGPLPRKECHICHKMVRVIQLKYHIQRHEDKSRYECVECQKVFSHLATYQAHLKYSRAHASDEVFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTAHKCPVCDKPIASRANVEKHMMRVHGKKKEKPRTHVCTTCRKAFTDRKALNQHLVIHSGERPLSCDVCQQTFKHKASLYTHRKRVHKVTPQRRALQYMEAERA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -