Gpyl019827.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000020.1:11057707-11063575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.95 91 4.7 0.0 1 23 214 236 214 236 0.96 2 12 1.6e-05 0.0015 19.8 5.3 1 23 242 265 242 265 0.97 3 12 9.1 8.7e+02 1.7 1.6 1 20 278 297 278 300 0.66 4 12 0.00061 0.059 14.8 2.8 1 23 570 592 570 592 0.98 5 12 0.16 16 7.1 3.0 2 23 598 620 597 620 0.96 6 12 0.00016 0.015 16.6 2.9 2 23 629 650 628 650 0.97 7 12 0.00015 0.015 16.7 1.2 2 23 654 675 653 675 0.97 8 12 0.13 12 7.5 1.0 2 23 689 711 688 711 0.96 9 12 7.4e-05 0.0071 17.7 1.4 1 23 717 739 717 739 0.97 10 12 0.18 18 7.0 1.9 2 23 746 767 746 767 0.97 11 12 0.024 2.3 9.8 0.5 1 23 773 796 773 796 0.95 12 12 4.7e-05 0.0045 18.3 4.4 1 23 800 823 800 823 0.95
Sequence Information
- Coding Sequence
- ATGGAGACAAGTGATATTACCAATTTACTGAGCTCGTCTCAGAACGATGTTGATACGAACCCGGCAGTATCAAACAAGTCGCTTCTAACTGCTAATAATGCTCAGGAAAATGTCAAACCTACTAAAAGAGAGAAGTTGACCACTAAAAATGCTGTGAAGTTTCTTCTAGAAGGAAGACTCAAACAGAAGGTGTGTCGCTACTGCTTGAATGTCGCGCACCCTCTGTCGTCTTTGGATCTAGTTCTGGAGATAGGTGGTCCAAGtataatgtacaaaataacAATACGAGACATGGTTGCTAGCTTTCACCCTTTCAAAGTAGCAGCAGACCCTAACTTTCCCAACAAGATATGCAATAAGTGCTTAAACCAGACCATTCGCTCATACTTATTTACTCAGCAGTGTGAACGATCTGAACGTGCATTGCGTAACTGTTTTGAGGACATGTATAACAAGTTAGACAAATTGGACCCATTAGAACCTAAGCCAAAGAAACGTGGCAGACAAAAAATGCACCCCAACTACAACACTTTGTACACAGATCATGAGAAAGTCATTGATTATGCTGAACCGATCATAAATATTGTGAATCTTGGAGCAGAGTACATTGATCAGgagaaaataaaagtagccaaTCAGTTTGAATGCCTGAAATGTTTGTTAGTGCTACCGAACCTGGTCTCATTGGCCAATCATGAGAAATTACATCCAAAGAGTATGTACTACCATTGCCGATATTGTGGTAAATCTTTTACAAAGCGTAATCTTTTGAAGAGGCACAGAAGTACTGTCCATGAGGACGGCAAGTTGAAACAGCTGGTACCAACAGATTTCAAATGtcatgtatgtgacgttgtgaATGAGGATCAAAATAAGCATATACAGCATATTGAAAAGCATAAATTTCAGATGGTAATGGAACACCTCATGGAAAAGAATATGGATAGATTGTGTGctgtttgttttgataaaaatcgaaaaTTAGTTGGTATGGACAACATGATCTGCCTTCATGGAGGATTTCCTGAAATGATGGGCAGTAGAACCCTTTATAACATTTTAGGATCTACAGTGCCTGAAATGAACATCTTACATAACTACACGGGGACAAAAATATGTGAAAAGTGCCTTAACCACGCTATAACGTCATACGTATTCATACAACAAACACAATATGTTAGAAACAGGTTGAACACTTGTATCAGTCTTATGTTAGATAATTTGAATAAAGTCCAAGAGCCCGAAGGTAACCTTTTCATAGAAATATCTCAAAATACAATAATGCCTATTGTGGAACAGGAATTTGATGAAACCCTTATGATAGATGAAGAAGATATTGATGAGTCTAAACTTAAGGTTGAGGTGTTAGAAGATGAATTCAGATTAAAATCTGAAAGTGAAGAGAGTGAAACTGAAGTCTTGGAACAAAAAGATGACATAGATCGAAAGCTGGAAGATATATTTGGGATGAAGTCAAAGCCGGATGAGGATGAAAAGGAAGCGAAATATTTAGCTGAGATACCGGATTTATCATATGAAACATTTGAAAATCCTGCTAAAAGAGCAATTAAGACATACAAGAAAAAAAGGTTATGCAATGGCATTAATtcatataatgaaaaaaaatacagctcGCTAAATGTCTGTAGTGAATTCTTAacgtttaaaaagaaaaaaaaacctatcaaGAAATTTCCTGATTGCAAATTCACATGTCCATTGTGcagcaaacattttatttctgatTATTTCTTAAGTAGACACATTTTGAAACatgtgtataaaaaaataaagtgcacACTTTGTAACGGACTCTTCAAATCTAAATTCTATCTACATGAACATGTGAAAAGGAATCATATTATGAAACAAACTGGCTATATGTCATGTAACACGTGTGGGAGGACTTTCGATAGCCAGAAAAAGTTCCTCCGACATAGGAACAGCCATGTAGGAAAAGAATGTCAACTTTGTGACAAAAGATTTGTTTCACAAAAGCCTTTCGAAAGCCACATGCAACGGCATGCATTCAAGTTTAATTTGCTTAAGCAGCGGAGAAAACAAACGTGCAGTTTCTGCGAGAAAGAGTGTGCCAACGACAATGAACTCTCGGTACATGTGAATAAAATTCATTTGCAAATAAAACCATATAATTGTGACATGTGCGATAGGCAATTTTACACGGAAAGCAATTTGAGCAATCATAAAAAGGCGCACAATATTTTCTCTAAAGAAAGTTGTGAATTTTGTGGGAAGATTTTAAAGTGTCGAAAAGATTTAGTTGTGCATGTCAGGAAACATATAGGAGTTCAACCACATGAGTGTCCTGTTTGCATCCAAGCATTTTACTCTAGCGAGAAAGTCCAAAAACATATGTTACTAAATCACGGAGGGACGTTCTGCTGTAAACTATGCAAAACTGTATTCAGACATAAAAGTGATCTTAAAAACCATATAGAAATAGCTCATAATGCTATTTAA
- Protein Sequence
- METSDITNLLSSSQNDVDTNPAVSNKSLLTANNAQENVKPTKREKLTTKNAVKFLLEGRLKQKVCRYCLNVAHPLSSLDLVLEIGGPSIMYKITIRDMVASFHPFKVAADPNFPNKICNKCLNQTIRSYLFTQQCERSERALRNCFEDMYNKLDKLDPLEPKPKKRGRQKMHPNYNTLYTDHEKVIDYAEPIINIVNLGAEYIDQEKIKVANQFECLKCLLVLPNLVSLANHEKLHPKSMYYHCRYCGKSFTKRNLLKRHRSTVHEDGKLKQLVPTDFKCHVCDVVNEDQNKHIQHIEKHKFQMVMEHLMEKNMDRLCAVCFDKNRKLVGMDNMICLHGGFPEMMGSRTLYNILGSTVPEMNILHNYTGTKICEKCLNHAITSYVFIQQTQYVRNRLNTCISLMLDNLNKVQEPEGNLFIEISQNTIMPIVEQEFDETLMIDEEDIDESKLKVEVLEDEFRLKSESEESETEVLEQKDDIDRKLEDIFGMKSKPDEDEKEAKYLAEIPDLSYETFENPAKRAIKTYKKKRLCNGINSYNEKKYSSLNVCSEFLTFKKKKKPIKKFPDCKFTCPLCSKHFISDYFLSRHILKHVYKKIKCTLCNGLFKSKFYLHEHVKRNHIMKQTGYMSCNTCGRTFDSQKKFLRHRNSHVGKECQLCDKRFVSQKPFESHMQRHAFKFNLLKQRRKQTCSFCEKECANDNELSVHVNKIHLQIKPYNCDMCDRQFYTESNLSNHKKAHNIFSKESCEFCGKILKCRKDLVVHVRKHIGVQPHECPVCIQAFYSSEKVQKHMLLNHGGTFCCKLCKTVFRHKSDLKNHIEIAHNAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -