Gpyl028179.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000035.1:3530516-3545082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 4.1e+02 2.7 3.0 1 23 242 264 242 264 0.95 2 13 0.3 29 6.3 0.0 3 23 288 309 286 309 0.95 3 13 0.00043 0.041 15.3 0.8 3 23 333 353 331 353 0.95 4 13 0.011 1.1 10.8 0.3 2 23 358 379 357 379 0.96 5 13 0.00019 0.018 16.4 2.0 1 23 388 411 388 411 0.94 6 13 0.015 1.4 10.4 0.6 1 23 417 440 417 440 0.94 7 13 0.0002 0.019 16.3 1.1 1 23 446 469 446 469 0.97 8 13 4.5e-05 0.0043 18.3 0.6 1 23 475 497 475 497 0.97 9 13 5.7e-06 0.00055 21.2 0.5 1 23 503 525 503 525 0.98 10 13 0.0021 0.2 13.1 0.7 1 23 531 554 531 554 0.96 11 13 6.4 6.1e+02 2.1 0.2 10 23 563 577 560 577 0.84 12 13 6.4 6.1e+02 2.1 0.2 10 23 586 600 583 600 0.84 13 13 6.4 6.1e+02 2.1 0.2 10 23 609 623 606 623 0.84
Sequence Information
- Coding Sequence
- ATGAATGTTTCAAAGAAAGGTCCTGTAGTGGAGGGTGGGTTGTGCCGCTGCTGTGGCGCGGTGAAGCGCTGCAGGCTGCTCAACGTCGAATATGAGTGGAGTGGCGTGAAGGAAGTTTACGTTGAAATGTTTTTGGACTGTTTTGGACTTTGTctGTCCCACTTAGATGGGGAGCCATCTGAGAGACTGATATGTGCCACATGCGTCACCAGGCTGAGGGACGCCTGCTCGTTCCGGCAGCAGGTGTTGCAATGCGAGGAAAAGCTGCTGCAGGCACAGATAAGAGTGGAGGGCGACTACCCGAGCCCTTTGACtgTTATAAAAAATGAACCAGAAATAAAGGAAGAAGTCGATGATGATATATGCGACTCGGTGCCCGACGATGCTGACCACATAGATGCTCAGGAAAATAATACTGAACACAATAATGGGCAGCAAGTTGAGGTGGAGGTGGAGGCTTGGCTACCTGAAGACTCTGAGCCGTTGTCTGTCCGTCTCTCGCGGAGGGGAGGAGAGGCGCGCGCCAAGAAGGAGATGCTCACGAAGCTGAAGAAGATGAGGGCCAAGTTGAAGAAGATGCAGCGTGGTGAAGAAGAATCAGTCGACCCGCCCCCGCAACCAGTCATCCGCCCTTGGAAGTCGTCCAGCCAGAAAGCTTTCCACAACACCACAGTCCTCGTCGAGAACTCATACGTCTGTCCGTTCGTCACGATATTCAGCGATTACCACTGCGTATACTGCAAGGAACTTCACACAGACCCGGATAAACTCAGAGAGCACACGCTCAATCACGACCCTACCACATACAAAGACACTGTGATATACAAAATGTCTCTCCAGATAGACATAGCCAGGATAGACTGCAGGTTGTGCCCGAAGCCGATAGACAACTTAGAAGACTTCTACTCCCACATAACCACAGTTCACGAGAAGATGCTGTATCCGAACATAAAGAATGAGTTCCTCAAGTTCAGGCTTAAGTTAGGTAACTTAGATTGCTTGGAATGCGGCTCCAGTTTTAGCTATTTCCACGCGTTGAAGAGGCATATGGCTGAACATTTTGGCGCATGGATATGTGATGTTTGCGGGGCTCATTTCTTTGAGGAGAACAAGTTGATTATTCATCAGAAGTCGCACCAGACGCAGAGGGCTGAGGATAGGTATCCGTGTAAGGATTGCGGGAAGGTCTTCAAGTCGAAGCATGGGAGGATATATCATGTGTCGAGGCAGCATAGTGATACGCCGTCTTATCCTTGCTATAAGTGCGATGAGGTTTTCTTCTCATATACTTTGAGATACCGGCACATGATAGAGGCACACGGTCAGCAGCGCAAGTTCCCTTGCGAGAGCTGCGACAAGGTTTACGACACGCGCAAGTCGCTCCGGGAGCACAACCGGAAGAACCACCTGAAGGTGCTCAAGCACGAGTGCTCCGTCTGCGAGAAGAAGTTCTACCTGCCCTCGGCGCTGAAGGACCACATGGCCTCGCACACTGGCGAGCGCAACTTCAGGTGCGAGTACTGCGGCAAGAGCTACCCGCGCATGCGCGCACTGCGCGTGCACGTGCAGTCACACGCCGCCGACAAGAAGTACAAGTGCGCCGTCTGCAGCGCCGCCTACACGCAGGGGAACAACCTGAAGCACCACGTGCGCGCCAAGCACCCGCACGTAGCCGTCGACGCCGCCTACACGCAGGGGAACAACCTGAAGCACCACGTGCGCGCCAAGCACCCGCACGTAGCCGTCGACGCCGCCTACACGCAGGGGAACAACCTGAAGCACCACGTGCGCGCCAAGCACCCGCACGTAGCCGTCGACGCCGCCTACACGCAGGGGAACAACCTGAAGCACCACGTGCGCGCCAAGCACCCGCACGTAGCCGTCGAGTGA
- Protein Sequence
- MNVSKKGPVVEGGLCRCCGAVKRCRLLNVEYEWSGVKEVYVEMFLDCFGLCLSHLDGEPSERLICATCVTRLRDACSFRQQVLQCEEKLLQAQIRVEGDYPSPLTVIKNEPEIKEEVDDDICDSVPDDADHIDAQENNTEHNNGQQVEVEVEAWLPEDSEPLSVRLSRRGGEARAKKEMLTKLKKMRAKLKKMQRGEEESVDPPPQPVIRPWKSSSQKAFHNTTVLVENSYVCPFVTIFSDYHCVYCKELHTDPDKLREHTLNHDPTTYKDTVIYKMSLQIDIARIDCRLCPKPIDNLEDFYSHITTVHEKMLYPNIKNEFLKFRLKLGNLDCLECGSSFSYFHALKRHMAEHFGAWICDVCGAHFFEENKLIIHQKSHQTQRAEDRYPCKDCGKVFKSKHGRIYHVSRQHSDTPSYPCYKCDEVFFSYTLRYRHMIEAHGQQRKFPCESCDKVYDTRKSLREHNRKNHLKVLKHECSVCEKKFYLPSALKDHMASHTGERNFRCEYCGKSYPRMRALRVHVQSHAADKKYKCAVCSAAYTQGNNLKHHVRAKHPHVAVDAAYTQGNNLKHHVRAKHPHVAVDAAYTQGNNLKHHVRAKHPHVAVDAAYTQGNNLKHHVRAKHPHVAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -