Gpyl014108.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000013.1:8042667-8057724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00088 0.084 14.3 0.6 1 23 297 320 297 320 0.92 2 11 0.012 1.1 10.8 2.0 1 19 343 361 343 365 0.90 3 11 5.7e-05 0.0055 18.0 3.8 2 23 371 392 370 392 0.97 4 11 3.2e-05 0.0031 18.8 1.0 1 23 396 419 396 419 0.96 5 11 0.029 2.8 9.5 1.2 1 23 422 444 422 444 0.97 6 11 0.0017 0.16 13.4 0.1 3 23 533 553 532 553 0.96 7 11 1.5 1.5e+02 4.1 0.2 2 23 573 595 572 595 0.95 8 11 1.7e-06 0.00016 22.9 4.1 1 23 601 623 601 623 0.98 9 11 0.0022 0.22 13.0 1.7 2 23 629 650 628 650 0.96 10 11 0.0027 0.26 12.7 3.2 2 21 657 676 656 679 0.95 11 11 0.011 1 10.9 1.1 3 19 719 735 718 740 0.94
Sequence Information
- Coding Sequence
- ATGGAACAGTTGTCAGTGCCTACCGAAACCGACGTCTTGTACCCGGTGCTCCTCATACCCAAGAGATGTACCACATTGGAAACCAGTTGTGAGGTGACGGATAATGTGTTTATCGACTTGAACATCACGTCTCCGGACACAGAAGGTAACGAGATGTGCATCTACAGTGGTTTTTGCAACGTGAAGCTGATAGACAGTTACGACGTCAACGTACACCAAGTGGGATCCTCTGCGGAGGCGAGCTACGATGAGGCTGGGGTGGAAACTGGGAACCAGATCGCGTACCCGCCGTACAACCAATCGCAAGTATGGATAGATCCCATACGAAGCCCGTATGTTTACAATCAGTATGACGCCACTGAGACCCAGGAGTATTCGATTAGTAGAACACGCACTGGCCATATTACCGTTGAACAACACAACACTTACATCACTCAGAACGTTTACAATTACAAGGAGTCTATTCATTACTCGTCCGGTGAAGATTTTGAGCATAAGAAGTTTAGGAAAGTGCAGGCGAGTGAGAATGTTCCACAGCAGAACGGTGATGggaataatttgaatttgtacgAGGAGGACGAGTTTGAGTGCGGAGTGTTTCTGTCTCACTTGCCGGAGGAGATAATGAATGAGAAGGAGAATAAAGCGAGAGAGGAGAGGAAGTACATTGGGATCCAGAGCGAGAACGGGGCGCTTAAGCAGCTGATGTCTTCGGATATCCAGTCGGTATCGAAGCAGAGGAAGACGATTCTGTTCCTGGGCCACGACTCGCACTGCGGACAGACGATACAGAAGATCGCCGTAAACGATCCGTCTCTGGTTTGTTCCGGGAGTGGCGACATCGACCATGAAGTCGTTATTgATGATGTGAACCCTCACCAAAAGAAGTACCAGTGTGACAAATGCAAACAGATCTTCGACCAGATATCGGCGTTCAAGCAGCACATGGTGGGCAGCCACCGGACTCCCAGGTCGACGAGCTCCTGTGACTCCTCCTCGAGCTCCAACACAGTTAGCGAGgtTAAATTCATGTGCAGCGAGTGTGGCAAGAGTCTTAAAAACCAGGAGAAGTTCGAACTGCATTGCATGGGGCACGGAGATCCAGAGCTAGAATGCAATAAGTGCCATAAAGTCTTCGCTTCTAAGTTCACATTGCGAACACatagaaaaatacattcaaGGAAATATCCGTGTTCGCATTGCAGCAAGACTTACTCTGATGCAGAAGACCTAAGAACGCACACAGCTAAGATACATTATATGTTCATGTGCGAGCATTGTGACTACGTGGCTGATAAGTACAAGGATCTAACTTTACATCAGGAAAATCATGAGAATCAGCCTTTTAACAAAGAAGATAGTGAGAACGATTTCACAGAGTCATTGATGAATGAGGTGATGAGTGAAGCGGATATTATAGTTCCAGCGACAGGTGAACCAGATTTTAAAATGGAGTCTGATGTGAGCTTGGAGTCTAATAACGATGTAAACGACGAGATAAAGAAGGCAGATTCTGTTATAGCCAAGGTTATGTCCAATAAGATATTTCTTCTTCATGCTAAGAAAGCTAGGAGACACAAAAGATACAATAAAGCGTGTGACGTATGCCTCAAGGTGTTCGACCGCGTGGGGGACCTAAAGCGGCATCTCATTGAGCACATCATCCGCAGCACTCTCGCAAAGACGCCCGTCTCCAAGAACGGCACCCTCAACATCCAGTGCGAGGTCTGCCAGAACGAGACCTTCACCATGATCGACAGGTACAAGGCTCATCTCCGCGAACACGCGAAACTGACACTATACAAGTGCACCTTCTGCGACAAATCCTTCAGCGACTCCTCAAATTTCTCCAAGCACAAAAAGATACACGGTACCACTTACTTGCAGTGTGATCTGTGCCAAAGGAAGTTCAACTCTAAGAAGATGATCACACAGCACATGGAGTACCATAACAAACATTCGCCGGTGAAATGTGAATACTGCGACAAGATATTCCATTTCGAGTCGATGCTGAATAAGCATATCAAGTGCGCGCACACTAGAGAGATGTGCAATAGGTTTAGGTGTCGATTCTGTCATGATTATTTCAAGACTTTGAAGGAGAAATGGGATCATGAATGGGCGGTCCACAACGTTAGGAAGATGATTGTGGATTGTCTAATATGTGGGGCGAAGTTCAGAAAGTATTCTGAGTTAAAGAGGCATTGTATAGATGCCCATGATATGGAAATACCGCCTGCTAAGAaattgttgaaaaataaaaggggGAAATCGCTGACCATCGCTGCTCCAGTTGCGTTGCAGCAGTATCCGTCAAAGTCCCGCAGCAATGTAACTGGCCGGCCAGGCCTGTGTACACAGCGGTATTCTCGAGCGACCTTGGGGCCGCGCATGCGCGCGCGTCACCTGCTGTCCGGACTCCGCACATCGGATTTCCACTTTTCCACAGTCCGCTACAGCGCGCCGCGCCGGTCGCGTCTCAACCCGCGCATATTCAAGAATCTGGGTTCTAGATTATACGCACATGGTCCCAGAAATGAGGATCTAAATATGGCAATTCTGCTACAGTTGGTCTTGTTGAAGAAAGAAGGGCGACTGGCGGATAGTCCTTCTGCTTACCGACCGATCGTCTTACTTGACGAGGTCGGCAAGCTTTTTGAAAGAGTGATCGCCTCCAGGATCAACTGTCACCTTAGGGAGCGCGGGCCGAATCTGTCTGACACCCAGTTCGGCTTTAGAGTGGGTCGCTCCACAGTGGACGCATTGGCACGGCTACAAGGGCTGGTTCGAAAGGCTTGGGACGAGGGAGAGGGAGTCTTGGCTATATCCTTTGATATAGCCAACGCGTTTAATTCCATCCCTCACTCCACAATTTTGAAGGCCCTCAAGTATCATGGTATCCCCAAATACCTCCAGCGTCTTTTGGAAAGTTATTTGTCTGGCAGGAAGGTTGTGTTTGTAGGGAGAGATGGCTGTTTCCGGCGTGCTGACGTTGaatctggtgttccacaggggtctgtgttagggcccctcttgtggaacatcggctacGACTGGGTTTTGCGAGAAATTCTTCTCCCGGGCATGAACCTCATTTGCTATGCGGATGACACTCTAGTCACGGCCCGAGGAAGAAACTATGACGAGGTCACATTTCGTGCAGCTGCTGGTGGGACTCTTATGGCAGAGCGCATAGGCCGCCTAGGTCTCGGAGTCGCGCTTGAAAAAACCAAGGCCATCTACTTCTATGGGCCTCGACAGCGCCGTCCCCCCTCAGACGCTCACATTGTCGTCGGGGGTGTGACCATTCGGGTGGAGGCTGAAATATCTGGGTATAATGTTGGATGCGCGGTGGACCTTTGA
- Protein Sequence
- MEQLSVPTETDVLYPVLLIPKRCTTLETSCEVTDNVFIDLNITSPDTEGNEMCIYSGFCNVKLIDSYDVNVHQVGSSAEASYDEAGVETGNQIAYPPYNQSQVWIDPIRSPYVYNQYDATETQEYSISRTRTGHITVEQHNTYITQNVYNYKESIHYSSGEDFEHKKFRKVQASENVPQQNGDGNNLNLYEEDEFECGVFLSHLPEEIMNEKENKAREERKYIGIQSENGALKQLMSSDIQSVSKQRKTILFLGHDSHCGQTIQKIAVNDPSLVCSGSGDIDHEVVIDDVNPHQKKYQCDKCKQIFDQISAFKQHMVGSHRTPRSTSSCDSSSSSNTVSEVKFMCSECGKSLKNQEKFELHCMGHGDPELECNKCHKVFASKFTLRTHRKIHSRKYPCSHCSKTYSDAEDLRTHTAKIHYMFMCEHCDYVADKYKDLTLHQENHENQPFNKEDSENDFTESLMNEVMSEADIIVPATGEPDFKMESDVSLESNNDVNDEIKKADSVIAKVMSNKIFLLHAKKARRHKRYNKACDVCLKVFDRVGDLKRHLIEHIIRSTLAKTPVSKNGTLNIQCEVCQNETFTMIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYLQCDLCQRKFNSKKMITQHMEYHNKHSPVKCEYCDKIFHFESMLNKHIKCAHTREMCNRFRCRFCHDYFKTLKEKWDHEWAVHNVRKMIVDCLICGAKFRKYSELKRHCIDAHDMEIPPAKKLLKNKRGKSLTIAAPVALQQYPSKSRSNVTGRPGLCTQRYSRATLGPRMRARHLLSGLRTSDFHFSTVRYSAPRRSRLNPRIFKNLGSRLYAHGPRNEDLNMAILLQLVLLKKEGRLADSPSAYRPIVLLDEVGKLFERVIASRINCHLRERGPNLSDTQFGFRVGRSTVDALARLQGLVRKAWDEGEGVLAISFDIANAFNSIPHSTILKALKYHGIPKYLQRLLESYLSGRKVVFVGRDGCFRRADVESGVPQGSVLGPLLWNIGYDWVLREILLPGMNLICYADDTLVTARGRNYDEVTFRAAAGGTLMAERIGRLGLGVALEKTKAIYFYGPRQRRPPSDAHIVVGGVTIRVEAEISGYNVGCAVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -