Gpyl021510.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000023.1:4128615-4145093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.015 16.7 2.9 1 23 279 301 279 301 0.98 2 12 0.095 9.2 7.9 3.9 1 23 309 332 309 332 0.94 3 12 0.0016 0.16 13.4 5.6 1 23 436 458 436 458 0.99 4 12 0.0046 0.44 12.0 2.3 2 23 467 489 466 489 0.96 5 12 0.12 12 7.6 5.7 1 23 493 515 493 515 0.98 6 12 0.00016 0.015 16.6 2.2 1 23 520 543 520 543 0.98 7 12 0.6 58 5.4 3.1 1 23 547 570 547 570 0.85 8 12 0.19 19 6.9 0.0 1 20 589 608 589 610 0.95 9 12 7.8 7.5e+02 1.9 0.1 5 23 656 675 653 675 0.90 10 12 2.9e-06 0.00028 22.1 1.0 1 23 684 706 684 706 0.98 11 12 3.4e-05 0.0033 18.7 1.2 1 23 712 734 712 734 0.97 12 12 5.5e-06 0.00053 21.2 2.6 1 23 740 763 740 763 0.98
Sequence Information
- Coding Sequence
- atgtggGATATAAAAGCGTGCATTGTGTGCTTAGGCACAAATGTTAAGCTATTTAACCTTGATATCGAAGGACTGAGGCCTCAATACAACGACATTTCAGGACTAAAGaCTTGTAAAGGTGATGGTATGCCTGAGTTTTTATGTTATGAGTGTGTTAGCTATGTAAAACGCTTCGTTAAGTTTCGGGACAAATGCAAAAGGGCCAATTTCACTTTGAAAGAATTATTACGAAGGAATAAAGAGttaaaaaagtcaacttTAGATGCTGTGAATCGTAAGTTAATTGGTATCAGTCCTGATTTGTCTTATTTGGATGTAGGAAAAGCTCACTATGAGCAAATGAAATTTCATTGGGTGAAAAACAATCGCATGTCAATATTCAGCAACGATACTATACCAATTGTCACGTATAGTACTCTAACTAAAGAACAAATGTTTGAGTCTTCGCCTGTAAGGAGAAATGAATCAGAATTCAAAGAtgaaaatgttgtaaaaacAGAAATTGATCCTGAATCTATGAGTACAGAGCTCAATCAAATTGAGATTTCAATTGGTAGTGAAGTCAAGAATGCATTTGATCAGCCTTCTTCCAGCTTTAATGAGAGCAATGCACAAATGGTAGATgatagttttgaaaataatgattattatgATAGTGATAATGAAATGGGCACTTTGGTTGATGATGTAAATAAAGTTGAGGCAGTGACTACGAAAACAGATGATAACGCTGATGGAAGTCAACTTGATCAGGAATATGCAACAATACTGCCAATTACTATGAGAGAAGCAAAGGCTGTGGTTGAAATATACAAAATGTTTGGTACGGGCAAGCACCGTTGCCAAATATGTAATAAGGCATTCTTTAATGAGAATAGGTTAAAGGTGCATTTACGAATGCATGATAAGTATATCAGTGGAACATACCACTGCGAGTTATgtaattattactataaaacagattttttactACGCACACATATGACTGAAAAACACATGTACAAATATGTTTGTAGAAAATGTCCTGAAGTTAATTTTCATAGAGCGGCAGCGAAACAACACTACATCTGGGCCCATCTTCAAAAGGGCAAAAAAGGTCACGGCTTGCTCTGGCCCAACAATCGACCCTCATGGCTCAGTAAAAAAGGGGGGAAGCGAACGAAGGCGGTCGCGGTCCAGAAACGTCCCAAGAAACCAGGCGCCAAACTTCCAGATGACTTTCTTGTGTATACTCCCGTTAGCCAGGAAGAGCAGTACAACCTTGTCAGGGAAAGGAAGATGACTAAAAACTACATTGAGGCGAAGTACCGGTGTGAATTGTGCTTTAGAGGTTTCAGGGTATACCATACATACAATAAACACATGAGGAAACATGATCCGGCGCTCTCAGGGGATCTGCAGTGTGACATGTGCAAAGTGCACTTCCGCGACGCTCGTAAGATGTACAAGCACATGAACATCACACATCTGTTCAAGTTCTCGTGCCGGGAGTGTGACTACGTCTGTTTCAACAAgAGCCAAGCGCACACGCATTACAGATGGCACAAGAATGTTACTTACCCATGTCCGCATTGTGAGAAGGAGTTTACTAAGCTATCGACGAGGCTGACGCACATACGTATGAAGCATCCTTCCAATCACATATGCAACTTGTGCGGGCACAGTTTTGTCAGTGAGACCGGCCTCTACTGCCACAAGCAGATTGCACACACGAGAGAGGAGATAGAGGAGGCAGCGGCGGTTCCGCAGGACCCCAGCAGCCGGTTCTACTGCGGCGAGTGCAGCGTGCAGTTCGTGGGGCAGGACGCCTTCAACGTGCACCTCGGCAGCTCCAACAAGCACGCACTCAGCAACATttcgGGCAAGGCGAATCACTTCCGTGAGCCGGTGGGCAAGCGGCGGCGGAAGTACCAGACGTCCTCAGAGATCGTCAACAACGGGTCGGCCACATCCAGTAGCTGTATAGAGTGCGGCAAGTATCTGGTGAACGACGTGCAGGCGCGCAAGCACTACGAGACGGAGCACCCCGGCACCGACTTCCTCAAGAGGTACATGTGTGACGTCTGCGGGCACACCACCAAGCAATACGCGAATCTGATCGTCCACATGCGGACCCACACCAACGAGAAGCCGTACCAGTGCCCGCACTGCGACAGGCGGTTCAGCATGCCCAGCAACCGCGACAGGCATCTTGTTGTGCACACTGGTGAGAAGCGGTACCAATGTCAGCATTGCAACCGTCGCTTTACTCAGAGCAGCGCCGTCAAGCTGCACATACAAACTGTACACCTCAAGATACCTTACGCGCCCTGGGACAAGAAGAACCGCAAGCGACGCAAGGAGCTAGAAGCGGCGGGCGCGCCCGTGAGTGCACTGGGAGCCGCGCCTGCGACATACACGCACCCGCACAAGCTGCTGCTGGACGCGCAGGGGGACTACCTCAACGCGTACATCACCTACAACGACGAGTGA
- Protein Sequence
- MWDIKACIVCLGTNVKLFNLDIEGLRPQYNDISGLKTCKGDGMPEFLCYECVSYVKRFVKFRDKCKRANFTLKELLRRNKELKKSTLDAVNRKLIGISPDLSYLDVGKAHYEQMKFHWVKNNRMSIFSNDTIPIVTYSTLTKEQMFESSPVRRNESEFKDENVVKTEIDPESMSTELNQIEISIGSEVKNAFDQPSSSFNESNAQMVDDSFENNDYYDSDNEMGTLVDDVNKVEAVTTKTDDNADGSQLDQEYATILPITMREAKAVVEIYKMFGTGKHRCQICNKAFFNENRLKVHLRMHDKYISGTYHCELCNYYYKTDFLLRTHMTEKHMYKYVCRKCPEVNFHRAAAKQHYIWAHLQKGKKGHGLLWPNNRPSWLSKKGGKRTKAVAVQKRPKKPGAKLPDDFLVYTPVSQEEQYNLVRERKMTKNYIEAKYRCELCFRGFRVYHTYNKHMRKHDPALSGDLQCDMCKVHFRDARKMYKHMNITHLFKFSCRECDYVCFNKSQAHTHYRWHKNVTYPCPHCEKEFTKLSTRLTHIRMKHPSNHICNLCGHSFVSETGLYCHKQIAHTREEIEEAAAVPQDPSSRFYCGECSVQFVGQDAFNVHLGSSNKHALSNISGKANHFREPVGKRRRKYQTSSEIVNNGSATSSSCIECGKYLVNDVQARKHYETEHPGTDFLKRYMCDVCGHTTKQYANLIVHMRTHTNEKPYQCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGAPVSALGAAPATYTHPHKLLLDAQGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365173;
- 90% Identity
- -
- 80% Identity
- -