Gpyl028142.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000035.1:3265000-3268161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.003 0.28 12.6 0.4 2 23 33 55 32 55 0.90 2 16 0.0002 0.019 16.3 0.1 1 23 60 83 60 83 0.97 3 16 0.064 6.1 8.4 0.4 1 23 169 191 169 191 0.98 4 16 0.036 3.5 9.2 0.2 2 20 219 237 218 241 0.78 5 16 0.32 30 6.2 1.5 2 23 263 285 262 285 0.94 6 16 0.00046 0.044 15.2 3.4 1 23 290 312 290 313 0.95 7 16 0.0027 0.26 12.7 0.1 1 23 317 340 317 340 0.94 8 16 0.12 12 7.6 0.2 3 23 344 365 343 365 0.95 9 16 2.1 2e+02 3.7 0.0 2 19 375 392 374 394 0.93 10 16 1.9 1.9e+02 3.8 1.6 1 23 443 466 443 466 0.94 11 16 7.4e-05 0.0071 17.7 0.2 3 23 569 590 567 590 0.93 12 16 0.0017 0.16 13.4 0.3 1 23 595 618 595 618 0.90 13 16 7.9e-05 0.0076 17.6 0.5 2 23 624 646 624 646 0.93 14 16 0.00014 0.014 16.8 4.0 1 23 650 673 650 673 0.97 15 16 0.073 7 8.3 1.2 2 23 680 701 679 701 0.95 16 16 0.014 1.4 10.5 2.4 1 23 707 729 707 729 0.97
Sequence Information
- Coding Sequence
- ATGGACGATATTATTGACCACTTGATAGCCGATCATGAGTGCGAATACGATAAAACTGTTTGCATGTATATGCAGATATATAACCTCTCTAAATCAACCTGCCCCGTTTGCTCCGAAAGCTTCGTATACGCCTCGTTTTTGATAAACCACGTCGACGAATGTCATCCCATAACCTATTTCCCATGCGTTGTGTGTCTGAAACAGTTCAGCACCGAGGAATATTTAGAGGAACACATTAGAAGTATTCACGAAGGACCTGACGTCTCCGCGTCAAGGTCGCCTTCACCAGTTGTCTCCGACCCGCGCAAAGAAATTGTTAGTCTTCTAAGAATGAGCAACGCGATGTTGTTCAAATACGCGAACGGACCTAAGTGCTTCTTTTGTAATAAGGATTACGATGAATATGTGCCGGGGACTGTGGGCAATGCTAATAAAATCAAGAGGAAGAACCTGGTAATATTGTTCAACAACACCACGATAATACCCTTTAAATGGAGAGGCAAATACATTTGCTTCTACTGCGGGGACGACGTGGAAACGTATAATGAGCTCAGAGAGCATACAAGGCGCCATGGGAACTGTTCAGACCAAGACCGAGCCATGAGACTGGTCAGAGGCAAAGATTCAGAAGTCAAAGTCGATGTCTCCGACATAACTTGCAACATTTGCAACGAAACTTTCACTCAGCTCGACGATATAGTGTTCCATTTGATAAGCAAACACAAATTGCAGTACAACAGAGACGTAGATCTCACAATGATCACTACCTACAGATTAGTCGACCTCAAATGCGTGGTCTGCGAGGACCGTTTCAACTACTTTAGCAAACTCATCAAACATGTCAACCATGAACATCCCGTCAACTGTTTCGCCTGCGATAGTTGCGACCAGAATTTTAACAAGAAGAGGGACTTAGAATCTCACAAGCGAACTCATCATAAGTCTACATACGTTTGTCCTAAATGCCTGCTAGTCTTTCCGACTTACGCTGCTCTGCAGTCGCATAAGTCCAATGCTCATGTTTCGGCTTGCAACGTGTGCTTTGAACCGTTCTCATCAGATGGGAAACGGCTTAAACACATGAAAGAGGCTCACTTACTCGGTCACGATAACGACAATTTACAATGCGGCTTCTGTCTCAAAGTCCTCACTACCAAAATAGCATTCCTGAACCACGCGGCGCAGTGTAACGTCAATGACAACTCTAAGTTGCACAGCGAGATAGGGGAATTCGAAAAAAAACCTAAAGTCGTTCAGATTAGGAATAATATAGCGTGCATAGTAAACATGTCCACGGCTCTTCCTTTTAAGTACTTTATGAACAAATTTAGGTGTTTTTATTGTCCGAACGATTTTCTCGAATGCGACGATTTGAGGGAACACACTATAAGGGAGCATCCAGTTTGCGATAGTAAGCTGAAGGCGATGAGGCTACGGGACAGGGAGTAcggacttaaaataaaactggacGTCGCTTTGTTGTCATGTAAAGTTTGTTTCAAACCTATGGAGGATTTAGATATTCTAATTAATCACTTAGTTGCGGAACATAACGCGCAGTACGACAAGACCGTTGATAATAACGTGCAACCGTTTAAACTGATCAAAGATAACTTCGCGTGTCCGTTTTGCTGTGAATGGTTCAGGTATTTCAGCAGCCTTCTAAAGCACGTAAGCCAATCGCACACAGACAATAGAACCATTTGTGTATACTGCGGAAAGTCTTTTAGGACGGACCCGAGTCTGCGAGCGCACATATCACTCAGGCATAAACCGAACGGTTACAAGTGTAGCGCATGCGGTTTAGATTTCACCACCAAAACAGCCCTAAGAGACCATTCCGGCAAAGCTCACGGCAATAAAGTCGCGAAGTGTCCGGAATGCTCGGAGAAATTCACGTCCCAGTACTCGATGCAGCGGCATTTGATAGACATCCACGCTTCTGGGCACAAATGTAGTTATTGCGGTAAATTGTTCACTAAGAACTCGTATATGGTTAATCATGTCAGGCGGACGCATTTGAAGGAGAAGAATGTCGAGTGCTCGATATGTTTCGAGCGGTTCTTCGACGTACATCTGTTGAGGATGCACACAGTTAAACATGCTGGGGAGAGGAATTTCCACTGCGATATATGCGGCAAGAAATTTCTTTGGAAAAAGAATTTGAAAGGGCATATGTCTTCTCATGTTGTCAAAATGAGACATCCACAAACATAA
- Protein Sequence
- MDDIIDHLIADHECEYDKTVCMYMQIYNLSKSTCPVCSESFVYASFLINHVDECHPITYFPCVVCLKQFSTEEYLEEHIRSIHEGPDVSASRSPSPVVSDPRKEIVSLLRMSNAMLFKYANGPKCFFCNKDYDEYVPGTVGNANKIKRKNLVILFNNTTIIPFKWRGKYICFYCGDDVETYNELREHTRRHGNCSDQDRAMRLVRGKDSEVKVDVSDITCNICNETFTQLDDIVFHLISKHKLQYNRDVDLTMITTYRLVDLKCVVCEDRFNYFSKLIKHVNHEHPVNCFACDSCDQNFNKKRDLESHKRTHHKSTYVCPKCLLVFPTYAALQSHKSNAHVSACNVCFEPFSSDGKRLKHMKEAHLLGHDNDNLQCGFCLKVLTTKIAFLNHAAQCNVNDNSKLHSEIGEFEKKPKVVQIRNNIACIVNMSTALPFKYFMNKFRCFYCPNDFLECDDLREHTIREHPVCDSKLKAMRLRDREYGLKIKLDVALLSCKVCFKPMEDLDILINHLVAEHNAQYDKTVDNNVQPFKLIKDNFACPFCCEWFRYFSSLLKHVSQSHTDNRTICVYCGKSFRTDPSLRAHISLRHKPNGYKCSACGLDFTTKTALRDHSGKAHGNKVAKCPECSEKFTSQYSMQRHLIDIHASGHKCSYCGKLFTKNSYMVNHVRRTHLKEKNVECSICFERFFDVHLLRMHTVKHAGERNFHCDICGKKFLWKKNLKGHMSSHVVKMRHPQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -