Gpyl018922.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000019.1:6756222-6766456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.046 4.5 8.9 0.6 2 20 7 26 6 28 0.88 2 13 2.1 2e+02 3.6 0.0 2 21 34 53 33 54 0.92 3 13 0.13 13 7.4 0.3 1 12 205 216 205 225 0.81 4 13 7.5e-05 0.0072 17.7 0.8 1 23 381 403 381 403 0.98 5 13 0.0012 0.11 13.9 0.9 1 23 422 444 422 444 0.99 6 13 0.31 30 6.3 0.4 1 22 469 489 469 490 0.70 7 13 0.00018 0.017 16.4 1.1 2 23 496 517 495 517 0.96 8 13 0.0033 0.32 12.5 2.4 1 23 533 555 533 555 0.98 9 13 1.4e-06 0.00014 23.1 4.5 1 23 561 583 561 583 0.98 10 13 0.031 3 9.4 10.6 1 23 589 611 589 611 0.98 11 13 1.9e-06 0.00018 22.7 0.4 1 23 617 639 617 639 0.98 12 13 0.00043 0.041 15.3 1.1 1 23 643 665 643 665 0.98 13 13 0.00048 0.046 15.1 0.2 1 23 673 696 673 697 0.95
Sequence Information
- Coding Sequence
- ATGGGAGACTTGATGTTGAAATGCCCCCTTTGTTGTAATAAAACTTTTGATTCAAAAATCTCATTGACTGTGCATTTAGTAAATGTTTTATCCAATTTAACTTGTCCAGTATGTGAAAATAAATGGTCGTCATTAGCCCATTTAATAGAACATTTAAATCTTGATGAATGCCAGCCTGAGTACATTATTGAAACTTTAGAAGAAGATATTGATGAGGCTATTGACGATACTGCATCACAAAAAACCAAATGTGAAAATGaaaatttaaattgcaatgaatatgaaatacctacattatCTGATGGTAGCCAAATTGAAAAAGAATTGAGTGAGGATACTTTAAACGATGACAGTACATACATTGGGTCACTTGATGACAAATCAAAGATATGTTCAGAAACACAGGGCTTGAAACTGGTATTTGAGGAAGGTGGGATGGAGCAGTATGTGTTCATGGATCAAGACGAAAGCCAGCTAGGTCTCCAGAGTACAGTGGTCACCAAACAGAATAATGATGGTACTATATCCTTGACAACAATCAAAGACATGAATGAGAAATCAGAAACTGAGATGAACCCTCCAGAAAGTGAAGTGGGGGACTCTGAGGGGCTATATATTTGCAACACATGTGGCATATCCTTTACATCAGTCATTGAACACATACAGACCTACCATAGTGACCAAGAAGTGGTTGTAGAGgaACCTTTAGAAGAAGATGACAATGGTCTTATTGAACCTGTACAATATGATAGTCTTCCCAGTGAAGATATTGCAGAAAAACAAGAGGCGCCTAGGAGAGTCATCACAGACACGGGTGATATTGTAGATGCAGCAATGATTATGAATAGTAATGAATCAAATGAGattatagTTCCAACAGCGTTGAAAGACATGCCCAAAGCAGAAAAGCAGAATCGACCGCAATCTAAGCGCTTTGTACAAATTGATGAATTCTGTGATAGTATGGTAAAGAATATAAAAGGTGAAGTAGATGAAAAAGATGGTCCATATCATAAAGTGATAATGAAGGAAGTTCAAACCCTTGGtggaaacaaaattaaatcatattatTGTATGTCTTgtaatatatatgttactaatttaaaaGATTTCAAGCTGCACCCATGCAAAACATTGAAATACCCTTGTCCACATTGTCCAGTTGCATATGAAAATTCAAAATCGTTATGTGGTCATATGAAAGTGCACAAACAAGCTCCAAAACTTAAACCAGATGAAGTTATCACAAATGGTCCAGTTACATATGAGTGTGGAATCTGTAATACAATATTCCtaacaaataaatcattgaAACTACATAAAAGGATGCATGACCCAATAAAgTCGCGCCCAATAGAGCCCCCAGTTGAGAACTCAGATGGCACAGAGGGAAGCACTGACAAGTACAAATGTAACATTTGTGACAAGATGATCCCGATGGACTACCGGACGATACACCAGAACTCGCACAACTCCAATGAGCTCAACTGCGCCATCTGCAACAGGAAGTTCCACTCTAGCGAGTATCTGGAGATGCACATGAATGTACATAACTTAGATAAGGTGCAAGAGAATAAGCCATATAAATCTCTTCCATATAATTGTTTGTACTGCACACGACGGTTCGCCAGGCCTCATGAAAAAGTTAAACACGAGAGAATACATACAGGCGAAAAGCCTCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGTACGCACACCGGCGCGCGCCCCTACTGCTGCAAGCACTGCGGGAAGAGGTTCAAAGCTCACAGCGTGTATAACCACCACCTGCTGACGCACTCTGAAGTGCGTGCGTACAAGTGCCCGTATTGCCCAAAGGCCTTCAAGACGTCTGTGCAACTTGCTGGACATAAGAACTCACACACGAAGCCCTTCTCCTGCCAGCACTGTAACAGACCTTTCGCGTCCCTCTACGCGGTCCGAGTGCACACGGAGACGCACTTGCGGCAGAACAACCTCAAGTTCGCGTGCACGCTGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTGCGGCAGGCGCACCACCAGGACATCAACACCAACGATCTTCCCATGGTGAGTACTTGA
- Protein Sequence
- MGDLMLKCPLCCNKTFDSKISLTVHLVNVLSNLTCPVCENKWSSLAHLIEHLNLDECQPEYIIETLEEDIDEAIDDTASQKTKCENENLNCNEYEIPTLSDGSQIEKELSEDTLNDDSTYIGSLDDKSKICSETQGLKLVFEEGGMEQYVFMDQDESQLGLQSTVVTKQNNDGTISLTTIKDMNEKSETEMNPPESEVGDSEGLYICNTCGISFTSVIEHIQTYHSDQEVVVEEPLEEDDNGLIEPVQYDSLPSEDIAEKQEAPRRVITDTGDIVDAAMIMNSNESNEIIVPTALKDMPKAEKQNRPQSKRFVQIDEFCDSMVKNIKGEVDEKDGPYHKVIMKEVQTLGGNKIKSYYCMSCNIYVTNLKDFKLHPCKTLKYPCPHCPVAYENSKSLCGHMKVHKQAPKLKPDEVITNGPVTYECGICNTIFLTNKSLKLHKRMHDPIKSRPIEPPVENSDGTEGSTDKYKCNICDKMIPMDYRTIHQNSHNSNELNCAICNRKFHSSEYLEMHMNVHNLDKVQENKPYKSLPYNCLYCTRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYCCKHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHLRQNNLKFACTLCGASYARAFALKDHVRQAHHQDINTNDLPMVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408684;
- 90% Identity
- -
- 80% Identity
- -