Gpyl029370.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000039.1:413727-438371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0022 0.21 13.0 2.7 1 20 387 406 387 409 0.92 2 13 0.0025 0.24 12.8 0.9 1 23 416 439 416 439 0.96 3 13 0.055 5.3 8.6 1.5 1 23 443 465 443 465 0.91 4 13 0.0054 0.52 11.8 1.6 1 23 470 493 470 493 0.98 5 13 0.05 4.8 8.8 2.2 1 23 497 520 497 520 0.94 6 13 0.05 4.8 8.8 2.2 1 23 528 551 528 551 0.94 7 13 0.0082 0.79 11.2 0.1 1 21 562 582 562 587 0.93 8 13 0.0021 0.2 13.1 2.2 2 23 602 624 602 624 0.96 9 13 0.00036 0.034 15.5 0.9 3 23 684 704 683 704 0.97 10 13 0.0065 0.63 11.5 0.3 3 23 712 732 710 732 0.96 11 13 2.7e-07 2.6e-05 25.3 1.0 1 23 738 761 738 761 0.96 12 13 1e-08 9.6e-07 29.9 2.4 1 23 767 789 767 789 0.99 13 13 2.6e-05 0.0025 19.1 3.7 1 23 795 818 795 818 0.95
Sequence Information
- Coding Sequence
- atggtGATTAATTGTTGTGTTAAAGGTTGTAACAATAAGGCCAACAGTGCAAAAAATTCACTTGGGATATCGTTTCATGCGTTTCCATCGAAAAAAGAGCTTCGTCAAAAGTGGCTACGAGCCATTGGTCGCCCTTACTGGAACCCACCAAACTATGTTCGAATCTGTAGTGCACACTTCAGAGTTGATCAAATTAACCAGGATGGGTCCAGGGTACGTATCAAGGACGACGCGTTTCCTGTTGAAGAATTACCACCTGCTTGCTCTTTCTCAGCATCAGATGTAGAAGTTTGCAGGATTTGCCTTATCACCGATGTACGGTTGTTCAGCCTCGAATATGGCAAGCTAAAAGTGTGTATGGAAGCCCTTGCTGAACTTGGTGATAAGAACACAATTCTGGACCTACCGCAATTTGTTTGCTATGAATGTGGAGCACAACTGTTGAAATATAACAAGCTTATAGAAAAAAGCTTAGTTGCACAAGCAATATTGCTTGATATATTTGCCGATAATGGACGGATTACGAAACgtcttgttaaaaaaaaagacagggCAGGATTGAACTTGCAATCTTCATTAGGATATTCGGAGTCAGCTGATGTCATTGAGTTAAATAATTGTAGCGATAGTGATGCAAGTCTCAATGAGTTTCCTGAATATATTGATATAGCTGACAATGATTTGGAGAATGTTGATGTGTGTAAAGATGAATTAAAGCAACTATCAGAAGATaataatctaaaattaaaatcagaaGAAACAGATTTGGATTCCGATAATCCAGATTATGAGATAGAAAAGgtagatttaaaaattgaagATGACGAAAATATAGAGGTTAATAAACAATTAGAAAACATTGAAAAGCCAGATTCGGATTTGGATGATTTAAAAGAAGTATTTGAGAATTTGGAAGAAGTTTTTAAAAGTAGTGAAGAGTCAGATGGTTCAGTTAAGTCTTATAAATTATCAAATGATGAAAGTAGTGAAGATGAAAATCTActgagtattaaaaataatgccaAGTATAAAAAACTTTCACAAGCCACTAAAGTTGGTACAAAAAACACCAGCTCAGGACGTGTTTATAGGAAAAATTTACAGGAACAAATAGAGGCATGGATCAATCATAACAAAGAGTCAGTCCAGTATTCGCAGTATCATTGTGAAATTTGCACAAGAAAATTTGTGAGGAAAAAAGCATATGAAAAGCATCTGCCAAAACACGAAGAATCTCGCGGCCAATTCGAGTGCCCCGTATGCAAGGAACGTTACCGAAATAAAATCCGTTTGAGCTCGCATAGAATAAGGAATCACGATAAAAAATACGAATGTCAGAAATGTTTCAAAATTTTTTACACtctCGAGAAGGCGCAGCGTCACGCGGACTTCCACTCGGAGCGCGTGTACAAGTGCCCGCACTGCGCGTTCAGCACGACGCGGCGCTCGACGGCGTGGGAGCACGTGCGCTCGCagcacgcgcacgcgcaccaCTGCGCGCTCTGCGGACACACCTTCATCAACGCCAAGGGGCTCGGCACGCACACCGCCATGTCGCACCCGGGACAGcacgcgcacgcgcaccaCTGCGCGCTCTGCGGACACACCTTCATCAACGCCAAGGGGCTCGGCACGCACACCGCCATGTCGCACCCGGGACAGCATGGAGAGCCGAAAACTCCATTTCCTTGCGAACAGTGCGACATAGTGTTCCATTCGGAAGCAGCCTTGCGGGTCCATAAGCTTGTCTCCATACAGCACAAGTTCCAAGCGAAGGCGCCGGACGAGTCGCCGCCCAAGCCGACGTGCAAGCGGTGCGGCAAAGTGTTCGCGAGCCGCCGCCACATGTACGGGCACGCGCGCAGGGAGCACTCGCGCCCGCACGCGCGCCCGCGACGCCCGCGGCCGCCCGACCCCGCCGCCGACGCCTACCCGCGCCCCTGCGACCATTGTGAGAAGGAGCTGAAGACCAGGTTCGAGCATTGGTGCCACGTGCGCCGCGAGCATCCCGAGCACAAGCATCTCTACAAAAAGGTCGTCAGCGCCATCTGTGCGACATGTGGGAAAGGTTTCCAGAGCAAGACGATGCTGACTCGGCACGAGCAGAAGCACCTGGGCCCGGCGCGGCTGGCGTGCCCGCTGTGCGCGCGTCGCTTCCACGACGAGTACTCGCTGGGCCGCCACGCGCGCGTGCACCAGGCCGCCAAGGACTTCGCCTGCTCGCACTGCGGGAAGGCCTTCAGGGTCAAGGGGAACCTCGAGCGGCATTTGAGGTACGCGCACACGCCGGACACGCCCTACCAGTGCACCGAGTGCGggaaagccttcaaggtgaagTCGAACTTCAAGCGGCATCTCAGGaCGCACACAGGTGAAACCCCATACATGTGCAAGTACTGCGGCAAGAAGTTCCGCTACTGGGAGAGTCTGACGCTGCACGAGAAGCACACGCATCAgaagGTGCCGTGGCCGACGCGCGACCGCTCCGTGCGCAAGAGGCCCGCCGAGCTCAAAGACGACGCAACCGCCGAGGACTAG
- Protein Sequence
- MVINCCVKGCNNKANSAKNSLGISFHAFPSKKELRQKWLRAIGRPYWNPPNYVRICSAHFRVDQINQDGSRVRIKDDAFPVEELPPACSFSASDVEVCRICLITDVRLFSLEYGKLKVCMEALAELGDKNTILDLPQFVCYECGAQLLKYNKLIEKSLVAQAILLDIFADNGRITKRLVKKKDRAGLNLQSSLGYSESADVIELNNCSDSDASLNEFPEYIDIADNDLENVDVCKDELKQLSEDNNLKLKSEETDLDSDNPDYEIEKVDLKIEDDENIEVNKQLENIEKPDSDLDDLKEVFENLEEVFKSSEESDGSVKSYKLSNDESSEDENLLSIKNNAKYKKLSQATKVGTKNTSSGRVYRKNLQEQIEAWINHNKESVQYSQYHCEICTRKFVRKKAYEKHLPKHEESRGQFECPVCKERYRNKIRLSSHRIRNHDKKYECQKCFKIFYTLEKAQRHADFHSERVYKCPHCAFSTTRRSTAWEHVRSQHAHAHHCALCGHTFINAKGLGTHTAMSHPGQHAHAHHCALCGHTFINAKGLGTHTAMSHPGQHGEPKTPFPCEQCDIVFHSEAALRVHKLVSIQHKFQAKAPDESPPKPTCKRCGKVFASRRHMYGHARREHSRPHARPRRPRPPDPAADAYPRPCDHCEKELKTRFEHWCHVRREHPEHKHLYKKVVSAICATCGKGFQSKTMLTRHEQKHLGPARLACPLCARRFHDEYSLGRHARVHQAAKDFACSHCGKAFRVKGNLERHLRYAHTPDTPYQCTECGKAFKVKSNFKRHLRTHTGETPYMCKYCGKKFRYWESLTLHEKHTHQKVPWPTRDRSVRKRPAELKDDATAED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00752137;
- 90% Identity
- iTF_00752137;
- 80% Identity
- iTF_00752137;