Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: -
Assembly: GCA_037074685.1
Location: JAYKKO010000005.1:4223584-4234427[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.2 2.1e+02 3.6 0.5 1 23 88 111 88 111 0.90

2 20 7.5 7.2e+02 1.9 0.1 3 23 116 136 114 136 0.94

3 20 0.0045 0.43 12.1 0.2 2 23 140 162 139 162 0.96

4 20 0.25 24 6.6 0.2 2 23 387 409 386 409 0.95

5 20 0.054 5.2 8.7 0.1 1 21 417 437 417 438 0.95

6 20 0.011 1.1 10.8 1.1 3 23 449 469 448 469 0.96

7 20 0.9 87 4.8 0.6 1 23 485 508 485 508 0.85

8 20 0.048 4.6 8.8 1.3 1 23 517 540 517 540 0.93

9 20 4.2 4e+02 2.7 0.3 1 20 551 570 551 574 0.84

10 20 0.037 3.6 9.2 0.4 2 23 619 641 618 641 0.87

11 20 4.8 4.6e+02 2.5 0.9 1 23 646 669 646 669 0.91

12 20 3.7e-05 0.0036 18.6 1.9 1 23 675 697 675 697 0.97

13 20 1e-05 0.00096 20.4 1.4 1 23 704 726 704 726 0.98

14 20 9.5e-05 0.0092 17.3 2.3 1 23 731 753 731 753 0.96

15 20 0.00017 0.016 16.6 0.7 1 23 759 781 759 781 0.98

16 20 1.1e-05 0.001 20.3 2.2 1 23 787 809 787 809 0.98

17 20 0.00018 0.018 16.4 3.2 2 23 816 837 816 837 0.98

18 20 0.0025 0.24 12.9 0.6 2 23 846 868 845 868 0.97

19 20 0.0032 0.31 12.5 0.5 1 23 873 895 873 895 0.97

20 20 2.9e-05 0.0028 18.9 1.8 1 23 901 924 901 924 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.2	2.1e+02	3.6	0.5	1	23	88	111	88	111	0.90
2	20	7.5	7.2e+02	1.9	0.1	3	23	116	136	114	136	0.94
3	20	0.0045	0.43	12.1	0.2	2	23	140	162	139	162	0.96
4	20	0.25	24	6.6	0.2	2	23	387	409	386	409	0.95
5	20	0.054	5.2	8.7	0.1	1	21	417	437	417	438	0.95
6	20	0.011	1.1	10.8	1.1	3	23	449	469	448	469	0.96
7	20	0.9	87	4.8	0.6	1	23	485	508	485	508	0.85
8	20	0.048	4.6	8.8	1.3	1	23	517	540	517	540	0.93
9	20	4.2	4e+02	2.7	0.3	1	20	551	570	551	574	0.84
10	20	0.037	3.6	9.2	0.4	2	23	619	641	618	641	0.87
11	20	4.8	4.6e+02	2.5	0.9	1	23	646	669	646	669	0.91
12	20	3.7e-05	0.0036	18.6	1.9	1	23	675	697	675	697	0.97
13	20	1e-05	0.00096	20.4	1.4	1	23	704	726	704	726	0.98
14	20	9.5e-05	0.0092	17.3	2.3	1	23	731	753	731	753	0.96
15	20	0.00017	0.016	16.6	0.7	1	23	759	781	759	781	0.98
16	20	1.1e-05	0.001	20.3	2.2	1	23	787	809	787	809	0.98
17	20	0.00018	0.018	16.4	3.2	2	23	816	837	816	837	0.98
18	20	0.0025	0.24	12.9	0.6	2	23	846	868	845	868	0.97
19	20	0.0032	0.31	12.5	0.5	1	23	873	895	873	895	0.97
20	20	2.9e-05	0.0028	18.9	1.8	1	23	901	924	901	924	0.98

Sequence Information

Coding Sequence: ATGTCTTCGGATGATTCTGACGATGAACCATTGTCAGTACTAGCTGCCGCTAAAAAGCTAAATCCTGAAAAACATGAGTTTCTTGATTCCTCGAATGCTCAGGTCCTCCGTGTCccaagaagaaagaaaaagaagtcTTTGGTGCCTGATAATTTAGCTATCacgataaaattatgtaaaagtaaagtaaatgaCGTTAAACTGGTGGAAAGACCCGCGGATGTTTGGTTGTACATAAAGGATTTAAACCCGACTGGGCCTTACAGTTGCCTCCTGTGCTCATTTTGGTTCATAAATCGATCTAAACTTATATTACACTATGTGTTAAATCATCAAAAAGACTTTTGTGGCATctgtaggTATTTTGTGGCAGGAAGAGAAGACTGGATAAATCATACAAAGTTTCACATGCCATGGCCTTGTTCACAATGCACAGAATCATATTCAACAGAACAGGAAATGCGAACGCATCTGAGCACTGTGCACAAATTGGTCCATTGCCGCTTGTGCCACTTCAGAACTAGTGATGATGAACAGTATGATAGCCATCTCTACCAAAAACATAATGTTTCAAATGTATCCAGTAAATATTCAGAATTATTATGGGAATTCCAATTCGATGGAGGTCCCAAGTTCACCTGTTTGCTTTGTAATAAAGGGAACAATTTAACCACAGCATTTTTCAGCCACTACATGGGCTATCATCATTTTACTCTTAAATGTCTTACGAGTATTATATCTGGCACAGATACTCCATTTGCGGTTGAAGGAGCAAATGTTAGCAATAACTTCATTGAGTGCCAGTTAAAGAATCAAGAGAAGATTGGGTATGtagatgcaaataaaaaacaggTCGATACAGGCTCGGTAGAGGAGGTTGAAAATATGGTTCTGGAGCCAGAAGTAAAACAAGAAGTTTTAAGcgataatgaaaataatgaagAGGAAATGGAGACTGCTGCTGATGTATCCACTGATCCAGTAACTAACTATAAAGGGGAAGAAGACTTTGATGTTACATTAGTGGAGTTGATCATCCTTCATAAATCATACTTTGACTATGTCAATAAACTGCTGAGTCATATTAATTCGAACAAATTATCGGATGACACTGAACTTGATTATAAGATGTTAAAGAAGGATGTGCCATTAAATGTAGTCTGCACTCTATGCAAGACAACTGTTAACTCTGTCGTCACTTTCGCTACTCATATGTCAAAGATTCATTCAGTGAAATCGGTGCCAATGTACTCGTGCAGAGTTTGCGCTACCTCATTCGATGTGCGGAACGAGTTCGAAAACCATATGTTGGAGGAGTTGGGTGAATTTGACGATTTATGGCTGTGCCAGTTCTGTGATAAAGAGTTTAATACTAGGGGAGCAACGAGAAAGCACTTGAGTGAACACTGGGACATCATTGAGTATGACAACTGCTTCAGCCCTCATTTAGGGTACAAATGTAAATACTGTCCCACTTTGTTTTGGAACGAAACTGACAGAGAGACTCATCAAGTGAGAGTTCATTACGTCAACCACAAGAATGAGTTTTATAAATGTGTCAATTGTTCTGAAATATTTAGTGAGAAGGTATGGTTCATTCATCATTACTTAGACAGGCATCAAACTGACGCTGAAGAAGTAAAGTTCCTTTTCAAATGTAATGTCTGCAGCCTCGCACTGCACACCATTGAGGAGATGAGGAGTCACTTTGCAGCAGAGCACCCTGAAGCGAGGAAGATATTCTGCACCCTTGGTTCTTGTCTATACAGACCCTTAAGCCAGAGGAAGTCATTCAAATTGCATGTCAAgACTTTCCACTCGAACGAGGGGCGCGGTCCGAACGAGAACACGACGAGCTGCCCGATGTGCGGCCGCGAGTTCACGAGTGCGCGAGCGTGCGGCGCGCACATGTCGCAGGCGCACGGCGCAGGCAAGTTCAAGTGCAAGCTGTGCCGCGAGGTGATGAACACTATGGACGAGAGGAAACTCCATTACCTCATAAGGCATCCAGGGCGGCACCCGTTCGAGTGTACAGAGTGCGGCAAGTCGTTCCAGTACAAATCGTCACTGTACATGCACAAGCAGGAGCACTCGCCCAACAAGCAGGCCTTCACTTGTACTTACTGCGGGAAGGTGTTCATGAAGAAAGACTCGTTCCGTGAGCACGTCCAGATCCACGAGGGCCCCCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCGAACATGCTGCGGCACGAGCGGCGGCACACGGGCGAGCGGCCGTACGCCTGCCCGCAGTGCCCGCGCACCTTCGCCGACAAGGGAGCCTGCACATCGCATCTGAGAACCCACTCTAAGGACAGATCCTACGCGTGCATGTACTGCGGGCAGACGTTCGTTCAGAAATCTAAACTTACGTACCACACCCGAAAGCACACTGGGGAAAATCTGGAGACGTGTTCGGTGTGTTCGAAGTTATTCACGAGCGCATGTTCTCTGCGTGAGCACATGAGGACACACGACCGCTCAACCATAGACTCTGTGCAGTGCCCTCTATGTGATCGCAAGTACCAAAACGGTCGGTACATGATGCGCCACCTTCGTACGCTGCACAACAAGGAGCGGTTCTCTTGTCCGCTGTGCCGCAAGTCGCTGACCAGCGTCGCGGGCTTGCGACACCACGTCGTGACACACGGCCGCGCGAACATGTACAAGTGCAAATTGTGCCCTAAAACGTACGCCGTAAGGAGGACTCTCATAAAGCACCTGCGCAAAAGACACGGCATCAAGAGTACCGCCCTCGGCGTGAAGGACTACTTCATCCGGCTCGACCCTCGCGATTGCGACCTGCCGCTTGACGAGGAAACCATCACCAAGATATTCGGGCCCCGTCAGAACAAAACTAATAACGACGTCCTATTGGGCGACTTTGTCACCTTCTCAAAGACTCTCAAAATAGCTGCTGATGCGGGACATGTGCAAGACGATGAAGGtgatgacgatgatgatgatgatgaaggaGATGATAAGGACAGCGGAGAGGAGAGTGAGGGAGAGGAGAAGGAGACAGAGGAGTTTCAAGTGGAGCTGGAGCCGACGGACTTTGTCAGCGTTAAGATTGAGCATGTGGAAGAAGATGAATATGTAGAagattaa
Protein Sequence: MSSDDSDDEPLSVLAAAKKLNPEKHEFLDSSNAQVLRVPRRKKKKSLVPDNLAITIKLCKSKVNDVKLVERPADVWLYIKDLNPTGPYSCLLCSFWFINRSKLILHYVLNHQKDFCGICRYFVAGREDWINHTKFHMPWPCSQCTESYSTEQEMRTHLSTVHKLVHCRLCHFRTSDDEQYDSHLYQKHNVSNVSSKYSELLWEFQFDGGPKFTCLLCNKGNNLTTAFFSHYMGYHHFTLKCLTSIISGTDTPFAVEGANVSNNFIECQLKNQEKIGYVDANKKQVDTGSVEEVENMVLEPEVKQEVLSDNENNEEEMETAADVSTDPVTNYKGEEDFDVTLVELIILHKSYFDYVNKLLSHINSNKLSDDTELDYKMLKKDVPLNVVCTLCKTTVNSVVTFATHMSKIHSVKSVPMYSCRVCATSFDVRNEFENHMLEELGEFDDLWLCQFCDKEFNTRGATRKHLSEHWDIIEYDNCFSPHLGYKCKYCPTLFWNETDRETHQVRVHYVNHKNEFYKCVNCSEIFSEKVWFIHHYLDRHQTDAEEVKFLFKCNVCSLALHTIEEMRSHFAAEHPEARKIFCTLGSCLYRPLSQRKSFKLHVKTFHSNEGRGPNENTTSCPMCGREFTSARACGAHMSQAHGAGKFKCKLCREVMNTMDERKLHYLIRHPGRHPFECTECGKSFQYKSSLYMHKQEHSPNKQAFTCTYCGKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPQCPRTFADKGACTSHLRTHSKDRSYACMYCGQTFVQKSKLTYHTRKHTGENLETCSVCSKLFTSACSLREHMRTHDRSTIDSVQCPLCDRKYQNGRYMMRHLRTLHNKERFSCPLCRKSLTSVAGLRHHVVTHGRANMYKCKLCPKTYAVRRTLIKHLRKRHGIKSTALGVKDYFIRLDPRDCDLPLDEETITKIFGPRQNKTNNDVLLGDFVTFSKTLKIAADAGHVQDDEGDDDDDDDEGDDKDSGEESEGEEKETEEFQVELEPTDFVSVKIEHVEEDEYVED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -