Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: -
Assembly: GCA_037074685.1
Location: JAYKKO010000028.1:8160777-8177460[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0013 0.12 13.8 0.9 1 23 153 176 153 176 0.95

2 13 0.026 2.5 9.7 2.7 1 23 180 202 180 202 0.98

3 13 2.1e-05 0.0021 19.4 1.5 2 23 208 229 207 229 0.98

4 13 9e-05 0.0087 17.4 0.2 1 23 235 257 235 257 0.97

5 13 7.7e-05 0.0074 17.6 2.1 2 23 265 287 264 287 0.96

6 13 1.4e-05 0.0014 19.9 1.3 1 23 293 315 293 315 0.97

7 13 0.0088 0.85 11.1 4.1 1 23 321 343 321 343 0.97

8 13 7e-06 0.00067 20.9 1.8 1 23 350 373 350 373 0.98

9 13 0.0063 0.61 11.6 3.6 1 23 379 401 379 401 0.97

10 13 6e-05 0.0058 18.0 0.8 1 23 407 430 407 430 0.94

11 13 3.5 3.3e+02 3.0 2.0 2 20 440 455 439 458 0.79

12 13 0.00027 0.026 15.9 1.0 1 23 463 486 463 486 0.97

13 13 0.0039 0.37 12.3 2.7 1 23 492 515 492 515 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0013	0.12	13.8	0.9	1	23	153	176	153	176	0.95
2	13	0.026	2.5	9.7	2.7	1	23	180	202	180	202	0.98
3	13	2.1e-05	0.0021	19.4	1.5	2	23	208	229	207	229	0.98
4	13	9e-05	0.0087	17.4	0.2	1	23	235	257	235	257	0.97
5	13	7.7e-05	0.0074	17.6	2.1	2	23	265	287	264	287	0.96
6	13	1.4e-05	0.0014	19.9	1.3	1	23	293	315	293	315	0.97
7	13	0.0088	0.85	11.1	4.1	1	23	321	343	321	343	0.97
8	13	7e-06	0.00067	20.9	1.8	1	23	350	373	350	373	0.98
9	13	0.0063	0.61	11.6	3.6	1	23	379	401	379	401	0.97
10	13	6e-05	0.0058	18.0	0.8	1	23	407	430	407	430	0.94
11	13	3.5	3.3e+02	3.0	2.0	2	20	440	455	439	458	0.79
12	13	0.00027	0.026	15.9	1.0	1	23	463	486	463	486	0.97
13	13	0.0039	0.37	12.3	2.7	1	23	492	515	492	515	0.95

Sequence Information

Coding Sequence: atggtGTCTGAAAACTCTGAAATATTCAACTTGAGTGCATTGTGTCGATGCTGCCACACTGACGGATATTTCAAGAGTCTCCAGGAGTCCTACGTTTACGAAAACGAGATTGAAATATATTCGAAAATGTTACGAGATGCAATTAGCGTTGAGATATTGCCTCCGTTGGTAGAGGCAAGTAACACAATCTGCGAATCCTGTATTCAACGGCTCAGAGATGCTTTCAGATTCAAGCAGCAAGTGTTGTTATGTGAGAAGAAATTTGAGGAGTATTGTAAAAATAGCAAGACTAAAATAGAAGTAGAAGTGCCTAAACTAGAAAAAAAGGACGAAACAAGAGGAACGGATGctaaaaagaaaattgttcGGAAGAaatCAAAGACAAAATCTGCTAAAGTGAGGACACCGTATGATCCATCTTTGGAAGTTCACGTTAAAACTGAATCAGGAATTGTTTATTATTGCCAGGCTTGTAACGAAAACTATACAGAACAGAAGTCGTTGAAACGCCACATTTTACTAAATCACTTTGGACGTTACAAGTGTTTTTACTGTGAAGAACGTTTCACTGCTACTAAGATGAGGAATGAGCATTTGAAGACGCATACAGAGTATGCAATGAAATGCGAATATTGTGATAaggtgttttttattaaaagcgcATTTAGGGATCACCAGAAAACTCATACTAAATTGAAAGTGTTTAAGTGCGATATTTGCTTGAAAGAGTTCGCTTATAAAGCTACACTCCGTGTCCACCTCTTGGGCCACTACGGTACAAAGAGGCGTTGTATCTGCCACCTCTGCGGGCACGGTTTCAACGATACAGCGAACTTAAACGCTCACATACTGACAGTCCATGAAAAGCAACGCCCGTACGCCTGTGAGCTGTGCCCTAAAACCTTCACAGcgaacaaacatttaaaacttcACATACTGAGGCACACTGGTGAGAAACCGTTCTACTGTGACCAATGCCCAAAGGGATTTTATTGCAAGAGCTCGTTGAAGAACCACAAGATATCCCATCTGGATGTTGGCAGCAAGTATACTTGTAAAGTGTGCAGGAAACGCTTCTCTGACCGGAGTGTTTTTGCAAGGCATTTGAGGAGGGCCCACGTTGGACAGAGGCCGTTCAAGTGTGATATATGTGAGAAAGATTTCACGTGTAAATATTCGATGAAGAGACACGTATTGGAGCATAGTGGTGTTAAGAATTATGTTTGTGAGCAGTGTGATGCTAAGTTTAGTCAGCGTGGTGCCTTGAAGAGGCATTTTGATAGGAAGCATGGAGTCCGGAAGGAGGGTGCAACGGATAAGTGTGATGTTTGCAACAAGATGGTGACTGATTTGAAGAAGCATATGCTTTGTCATAATAATAAGAGGTTTTCTTGTGAGTTTTGTGATAAGAGTTACTCGGAGAATAATGTTTTGACAAGGCATAAGAAAGTTGTTCATTTCGGTATAAAACCTCATATTTGTCAGTTCTGCGACAAGAAATATGTTAAGGTGCAGAGTTTGAAGAATCATCAGTTGAAGGTACATAAGATTGTGTCTAAAATAGAGACTGATGAGGACTTCGGTAGTGCTGTGGCCAAgttcagtataaaaaataagaaggGACGGATTAAGACTGAAGGCGGTTTGGTTGAGGAGATACCTAATTTTACGTAA
Protein Sequence: MVSENSEIFNLSALCRCCHTDGYFKSLQESYVYENEIEIYSKMLRDAISVEILPPLVEASNTICESCIQRLRDAFRFKQQVLLCEKKFEEYCKNSKTKIEVEVPKLEKKDETRGTDAKKKIVRKKSKTKSAKVRTPYDPSLEVHVKTESGIVYYCQACNENYTEQKSLKRHILLNHFGRYKCFYCEERFTATKMRNEHLKTHTEYAMKCEYCDKVFFIKSAFRDHQKTHTKLKVFKCDICLKEFAYKATLRVHLLGHYGTKRRCICHLCGHGFNDTANLNAHILTVHEKQRPYACELCPKTFTANKHLKLHILRHTGEKPFYCDQCPKGFYCKSSLKNHKISHLDVGSKYTCKVCRKRFSDRSVFARHLRRAHVGQRPFKCDICEKDFTCKYSMKRHVLEHSGVKNYVCEQCDAKFSQRGALKRHFDRKHGVRKEGATDKCDVCNKMVTDLKKHMLCHNNKRFSCEFCDKSYSENNVLTRHKKVVHFGIKPHICQFCDKKYVKVQSLKNHQLKVHKIVSKIETDEDFGSAVAKFSIKNKKGRIKTEGGLVEEIPNFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -