Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: -
Assembly: GCA_037074685.1
Location: JAYKKO010000035.1:3262702-3264921[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0012 0.12 13.9 1.3 1 23 48 70 48 70 0.94

2 16 0.0039 0.37 12.3 0.0 2 23 98 120 97 120 0.96

3 16 0.0049 0.47 11.9 0.2 3 23 142 163 142 163 0.96

4 16 3.2e-05 0.0031 18.8 0.8 2 23 169 190 168 191 0.94

5 16 7.7e-05 0.0074 17.6 0.8 1 23 196 219 196 219 0.98

6 16 0.0054 0.52 11.8 0.6 2 23 222 244 222 244 0.96

7 16 1.4 1.3e+02 4.2 2.0 2 20 251 269 250 271 0.91

8 16 0.0051 0.49 11.9 1.8 1 23 325 348 325 348 0.95

9 16 4.8 4.6e+02 2.5 0.2 2 23 376 398 375 398 0.89

10 16 0.79 76 5.0 0.1 2 23 421 444 420 444 0.93

11 16 0.0002 0.019 16.3 0.1 3 23 451 472 450 472 0.94

12 16 0.00085 0.082 14.3 2.9 2 23 477 499 476 499 0.94

13 16 0.00066 0.064 14.7 3.4 1 23 504 527 504 527 0.97

14 16 4.5e-05 0.0043 18.3 5.2 1 23 531 554 531 554 0.97

15 16 0.0015 0.14 13.6 0.1 2 23 561 582 560 582 0.96

16 16 0.00017 0.017 16.5 3.8 1 23 588 610 588 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0012	0.12	13.9	1.3	1	23	48	70	48	70	0.94
2	16	0.0039	0.37	12.3	0.0	2	23	98	120	97	120	0.96
3	16	0.0049	0.47	11.9	0.2	3	23	142	163	142	163	0.96
4	16	3.2e-05	0.0031	18.8	0.8	2	23	169	190	168	191	0.94
5	16	7.7e-05	0.0074	17.6	0.8	1	23	196	219	196	219	0.98
6	16	0.0054	0.52	11.8	0.6	2	23	222	244	222	244	0.96
7	16	1.4	1.3e+02	4.2	2.0	2	20	251	269	250	271	0.91
8	16	0.0051	0.49	11.9	1.8	1	23	325	348	325	348	0.95
9	16	4.8	4.6e+02	2.5	0.2	2	23	376	398	375	398	0.89
10	16	0.79	76	5.0	0.1	2	23	421	444	420	444	0.93
11	16	0.0002	0.019	16.3	0.1	3	23	451	472	450	472	0.94
12	16	0.00085	0.082	14.3	2.9	2	23	477	499	476	499	0.94
13	16	0.00066	0.064	14.7	3.4	1	23	504	527	504	527	0.97
14	16	4.5e-05	0.0043	18.3	5.2	1	23	531	554	531	554	0.97
15	16	0.0015	0.14	13.6	0.1	2	23	561	582	560	582	0.96
16	16	0.00017	0.017	16.5	3.8	1	23	588	610	588	610	0.97

Sequence Information

Coding Sequence: ATGGCAGTGGTTTCTGCTGTGGAAACAAGACATGAAAACGCACGGGCCCCTTACGAAGGCTGCGCCTCTGAGCGCCGGAGAAAGAACTTGAAAATACTTTTCAACTACACCTCAATAATACCGTTTAAATGGCGAGGACGCTTTCTGTGTTTCTTCTGCCCAAAGAGTTTTACTGAGTACGCAGAGTTGAAAAGCCACACGAAAGACCACGGCTCTTGCACTACCAAAGATTATTCTTTCCGCGCGATCAAAGGGAGCCACGTGGAAATAAAGATTGATGTATCCGAAGTAGTCTGTCAGATTTGCACCGAACCTTTTGACAATTGGTCGGAAATCCTAGATCATTTGACGACGAAACACGAAATGGAATACGATAGGTCGGTCGAAGTGCCTCTTCAGGCTTATCGGTTGTCGGATTTAGGCTGCTTGTTTTGCGGAGAACAATTTAGCTATTTCGGGAACCTGATCAGTCATGTTAATGTCACTCATCCGCAGAACAAATTGATTTGTGACGACTGCGGGGTGTCATTTAACAAAAAGAGAGACTTGGCAGTTCACTATCGCTATCACCATCGTAAAGGAGGGTACCCATGCGACCAGTGCGGTCAGAATTTCGAAAACTTCTACACGCTAAGATCCCATAAGAATACGGCCCATTATAGGAAGTGCTCGAGCTGCAATCTAAGGTTCGGGACTATGACTCTCCTCCAAAAACATATCTTGATTGAACATCCGGATAACGGTAACTTAACTTGCGAATACTGCTCCAAACTGTGTCAAACTTTACAAGGTTTAAGGCAGCATAAGAGCAAATGCAGGGTCAAGATGATCTGCACGACTGACGACGCGGACTCGTCTCTCGCGATCTACAACGTACAGCCCGCAAAGAGACAGAACATCAAACAGATCAGGCAGAATATTCAATGTGTCTTGAACATGTCCACGGCGGTACCTTTTAAATTCTTCTCAAAGTTCTCCTGTTTTTACTGTTCGAAGAAGTTCTTTGAATTTGACGAGCTTAAACAGCATACGGCTGTGGAGCATCCCGTATGCGATCTTGAGTCTAAATACATGAGGAAATGTAAAGGTGAACGCATAAATGTGAAGATTGATGTCTCGTCCTTGATGTGTAAGGTATGCCACCAGCCGATGGACGAGTTGAACACGCTCATTGATCATTTAATCTCAGAGCATAAGGCAAACTTTGACAAGTCAACGTCCAGATGTTTAGACCCGTACAAGATTATAAAAGACAACATACCGTGTCCATTGTGCCCGGACCGGTCGTTCAGATATTTCGGTATTTTGCTGCGACATATAAACTCTGATCACAgcaacaataacaaaatatgcGATTTCTGCGGCCGTGCGTTTAGGAGCGTCGTTAACCTCAACGTGCATATATCATACGCGCACGCTGGGGTGTGCGCTTGCGACGTTTGCGGTATCAAGTTCAAGAACCAGTGGTGTCTCGCAAGGCACCGTGCTAAGACCCACGATGCTAAAGATTACAAATGTCCGAAATGCCCGGAACAGTTTCAGTCTCAGTATCACAAGCAGAAGCATTTGATTAAAATGCACGATGTTGGTCACAAATGCGTGCATTGCGGGAAGATGTTCACTCGGAACTCTTTTATGAAGGATCATGTTAGAAGGATACATTTGAAAGAGAAGAATGTACCGTGCCCCCTGTGTGCTGAGAGGTTCTTCGACAACTATCTGCTGAAAATGCATATGGTGAAGCATGAGGGGGAGAGGAGGTTTTGTTGTACCGTTTGCGGGAAGGCGTTCCTCCGCAGGAGCAATCTTCACTCTCATATGGGGATGCATAAGAAGTACGGGCACGCGGTCGGGACGATACAAGACATGATGAATTAA
Protein Sequence: MAVVSAVETRHENARAPYEGCASERRRKNLKILFNYTSIIPFKWRGRFLCFFCPKSFTEYAELKSHTKDHGSCTTKDYSFRAIKGSHVEIKIDVSEVVCQICTEPFDNWSEILDHLTTKHEMEYDRSVEVPLQAYRLSDLGCLFCGEQFSYFGNLISHVNVTHPQNKLICDDCGVSFNKKRDLAVHYRYHHRKGGYPCDQCGQNFENFYTLRSHKNTAHYRKCSSCNLRFGTMTLLQKHILIEHPDNGNLTCEYCSKLCQTLQGLRQHKSKCRVKMICTTDDADSSLAIYNVQPAKRQNIKQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFFEFDELKQHTAVEHPVCDLESKYMRKCKGERINVKIDVSSLMCKVCHQPMDELNTLIDHLISEHKANFDKSTSRCLDPYKIIKDNIPCPLCPDRSFRYFGILLRHINSDHSNNNKICDFCGRAFRSVVNLNVHISYAHAGVCACDVCGIKFKNQWCLARHRAKTHDAKDYKCPKCPEQFQSQYHKQKHLIKMHDVGHKCVHCGKMFTRNSFMKDHVRRIHLKEKNVPCPLCAERFFDNYLLKMHMVKHEGERRFCCTVCGKAFLRRSNLHSHMGMHKKYGHAVGTIQDMMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -