Gpyl024103.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000027.1:5641163-5655216[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.1 4e+02 2.7 0.5 2 19 262 279 261 283 0.71 2 13 0.00015 0.014 16.7 3.2 1 22 288 309 288 312 0.92 3 13 0.00063 0.061 14.7 2.5 2 23 428 450 427 450 0.94 4 13 0.0022 0.21 13.0 0.0 1 23 456 478 456 478 0.96 5 13 0.023 2.2 9.8 0.2 1 23 487 510 487 510 0.88 6 13 1.8e-07 1.7e-05 25.9 3.5 1 23 515 537 515 537 0.98 7 13 1.8e-05 0.0017 19.6 1.0 1 23 543 565 543 565 0.96 8 13 6.2e-05 0.0059 17.9 5.1 1 23 571 593 571 593 0.98 9 13 2.8e-07 2.7e-05 25.3 0.6 1 23 599 621 599 621 0.98 10 13 0.0025 0.24 12.9 4.4 1 23 627 649 627 649 0.98 11 13 0.0032 0.31 12.5 0.0 1 22 655 676 655 676 0.94 12 13 0.00014 0.014 16.8 0.5 1 23 683 705 683 705 0.98 13 13 2.6e-06 0.00025 22.3 1.8 1 21 711 731 711 732 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTCTTTCTCTATAATTCAACAGTTTGTAGATTATGTGGCGAAGAAAATGATAATGGGACATTGTTATATTCTTGTGAAGAAAATAGTCAAAACTTAAGTGACCTTATTAATACTTATTTGCCGCTGAAGgttaCAGATGATAGACAATTGCCACGCACAATATGCCCTGGTTGTACCATTCAGTTGGAAGCAACTGTGGAATTTATGACCCTTATTATTAATGGACAGAAAGTTATCCGTGAACTCTACCAAAGagaaaaagaatataaaagtaATCTCCTTAACAATACTTCTAAAGAAGAGGATGTTATAACCGAGAATGTTGTCTATGAGATTACCAGCGATGGCTTGTACCAAGTGGACCACCCAGTGTCACTGGCTGCCGCCGGGCTGGACAAGCCCAAGCGTAAGCGAGGCCGCCCGCCCAAGAAGAGCAAGATTGTTGAGGCTCAAGCACAGGCGGTGGCAGCGAAAGCGGACACGCATAAAACTGACTCACCAGAGGAACCTAGTGGGAAGAGGAGGAGGAAGACGCCCACCCGGTTCAGGGAGGCTGTGCAGGGCAAGGAACTGGAGCGTATCTTCATCGAGGAAGGCGTGACGGACGGCGACAGCGACCGTGAGAGCGCGCCCGAGGCGAAGCCCGACATGAAGCCGCCGCCGCAGCCCAAGGAGCCCGAGGTGATCGGCCACTTGGAGGACTCCGGGGAGCTGGTCGTCGTCGTCAAGGGGAAGGGACGCGGCAGACCTAAAGGCCGCATGCGCCAGACGCGGCAGGAGTGCGCCATCTGCGGCACGGAGTTCTCGTGCGTGGGCCGCTACATGTCGCACGTGGCCAGCCACGGGCCGGTGCTGTACCGCTGCCAGCAGTGCGACGAGACCTTCACCACGCGCCTGCACTTCACCACGCACCAGCGCGACGCGCAGCACCAGGGGCAGGTCATCATACCGTGCGCGCAGAACACTGCGCAGGATCACAATCCCTCTGTGAAATGTTCAGACCAGCCCCAGGACCCCCTAGACTTGGCGTCCGTGGACACGATGGTGAGCAACGCGTGCCGCGGCCTGCCGCCGCTGGAGCCGCCGCCGCTGGACGACCCCTCGCCCGACGACTCGCCCGCGCGAGCCCTGCCCGTCCGGGACACCGACGCGCCTGACACAGCCGCCGGTGCAGTGCCTATTGCTGATACCATTAAGAAAGacGTAATATTAATTGATGAACCCGAGAAGACTGAAGAAGAAGATGATAAGAATAAGAAAGGAAAACCAAAACTTAAATGTAATCATTGTGACAAAATGTTTAGCAGTAAGCAAAGCAAATCATTACACATaaagGCGGCGCACCAGGGCGAGCGTCCGTACGCGTGCGGCGAGTGCGGCGCCATGTTCGCGTACCCGCGCTCGCTGTCGCTGCACGCGCTGTCGCACCGCCGCCAGCAGCAGCCCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGGTTCTGAATCACCCGTCGTCGGTGGTGTACCACAAGGAGGCGGAGCACGCGGGCCAGCGGTACGTGTGCAACAAGTGCGGCAAGTCGTTCAAGCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCACAGGCCGTTCGACTGCAAGACATGCAATGCATCGTTCAAGACGAAAGCGAACCTTCTGAATCACCAATTACTGCACACTGGAATAAAGAAGTTCACGTGCGAAATATGCAAGCACAAGTTCGCGCATAAGACCAGCCTCACGCTCCACATGAGGTGGCATACAGGGCACAAACCGTTCTCGTGCGGCAAGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACCGGCGAGAAGCCGTACGAGTGCACGCTGTGCAACCGCCGCTTCACCACCTCCTCCCAGCACCGGCTGCACGCCAGGCGGCACAACGCCGAGCGGCCCTACGCCTGCGTCTCCTGCGGGAAACGATTCGTGTCCCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGCCGGCGCGCGCACGCACCGCTGCAGCGCGTGCCCGCGAGCCTTCGCCGAGCGCTGGGCGCTGCTGAAGCACATGCGGCGCCACACCGGCGAGCGGCCCTTCCGCTGCCCGCACTGTCCCCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGGTGAGTCTGTAG
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSCEENSQNLSDLINTYLPLKVTDDRQLPRTICPGCTIQLEATVEFMTLIINGQKVIRELYQREKEYKSNLLNNTSKEEDVITENVVYEITSDGLYQVDHPVSLAAAGLDKPKRKRGRPPKKSKIVEAQAQAVAAKADTHKTDSPEEPSGKRRRKTPTRFREAVQGKELERIFIEEGVTDGDSDRESAPEAKPDMKPPPQPKEPEVIGHLEDSGELVVVVKGKGRGRPKGRMRQTRQECAICGTEFSCVGRYMSHVASHGPVLYRCQQCDETFTTRLHFTTHQRDAQHQGQVIIPCAQNTAQDHNPSVKCSDQPQDPLDLASVDTMVSNACRGLPPLEPPPLDDPSPDDSPARALPVRDTDAPDTAAGAVPIADTIKKDVILIDEPEKTEEEDDKNKKGKPKLKCNHCDKMFSSKQSKSLHIKAAHQGERPYACGECGAMFAYPRSLSLHALSHRRQQQPKGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQHRPFDCKTCNASFKTKANLLNHQLLHTGIKKFTCEICKHKFAHKTSLTLHMRWHTGHKPFSCGKCGKSFSQKGNLSEHERIHTGEKPYECTLCNRRFTTSSQHRLHARRHNAERPYACVSCGKRFVSRGSWAAHVRREAGARTHRCSACPRAFAERWALLKHMRRHTGERPFRCPHCPRAFADCSNLNKHKRVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -