Gpyl025625.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000030.1:4436943-4445656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 5.2e-05 0.005 18.2 2.3 1 23 210 232 210 232 0.99 2 30 0.0013 0.12 13.8 0.5 3 20 264 281 262 283 0.93 3 30 7.2e-05 0.007 17.7 0.4 2 23 314 336 314 336 0.97 4 30 0.15 14 7.3 0.1 2 21 354 373 353 374 0.91 5 30 3.5 3.4e+02 3.0 0.3 1 23 384 407 384 407 0.91 6 30 0.021 2 9.9 0.0 2 23 425 446 424 446 0.94 7 30 1.6e-05 0.0015 19.8 0.8 2 23 488 510 487 510 0.96 8 30 0.00022 0.021 16.2 2.0 2 23 552 574 552 574 0.97 9 30 0.0015 0.15 13.5 1.4 1 23 624 647 624 647 0.96 10 30 0.00026 0.025 15.9 0.1 1 23 708 730 708 730 0.97 11 30 0.00015 0.014 16.7 3.7 2 23 742 763 741 763 0.97 12 30 0.15 14 7.3 1.8 2 23 775 796 774 796 0.96 13 30 0.0046 0.44 12.0 1.7 1 23 806 828 806 828 0.98 14 30 0.01 0.96 11.0 4.4 1 23 855 877 855 877 0.96 15 30 0.00067 0.065 14.7 3.5 1 23 888 910 888 910 0.98 16 30 3.6e-05 0.0035 18.6 0.4 1 23 918 940 918 940 0.98 17 30 0.00071 0.068 14.6 0.4 2 23 960 982 959 982 0.97 18 30 0.43 41 5.8 1.0 1 23 1000 1022 1000 1022 0.92 19 30 1.7 1.7e+02 3.9 3.3 1 23 1029 1051 1029 1051 0.81 20 30 0.04 3.8 9.1 5.5 2 23 1062 1084 1061 1084 0.95 21 30 0.00093 0.089 14.2 0.3 1 23 1106 1128 1106 1128 0.97 22 30 1.1 1.1e+02 4.5 0.2 2 20 1132 1150 1131 1151 0.91 23 30 8.1 7.8e+02 1.8 4.1 2 23 1171 1193 1170 1193 0.94 24 30 0.0092 0.89 11.1 0.3 2 23 1209 1230 1208 1230 0.93 25 30 8.4 8.1e+02 1.8 5.6 5 23 1240 1258 1238 1258 0.94 26 30 0.016 1.5 10.4 0.8 2 23 1269 1291 1268 1291 0.95 27 30 0.19 18 7.0 2.2 2 23 1308 1326 1308 1326 0.89 28 30 0.24 24 6.6 0.4 2 23 1399 1420 1398 1420 0.93 29 30 0.0045 0.43 12.1 0.4 2 23 1431 1453 1430 1453 0.95 30 30 0.33 32 6.2 4.5 2 20 1491 1509 1490 1511 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTGGGCAAATGCAGGCTTTGCCTGAAATTAGGCGATTTTTACTCCATCTTCGCGGTGGACAATGCCTTGCAACTTGCCGAGATGGTTATGGAATGCGCTCGGGTAAAGATCTACGAAGGCGACGGGTTGCCCGACAAGATCTGCACCGAGTGCGTGCAGAAGCTGAGCAGCGCTTACATCTTCAAGCAGCAGTGCGAGCGCTGCGACCAGGAGCTGCGACGGAACTATGTGCCGCCGCCGGGTTTCAGCATTACACCTCCGCCGCCTAACAGACAAAGCAGTGACTCAGCTTTCTCCACGCACACCGACGTCTCTAATCAAACCAAGCCGTCGTCTTCTAACGACACGTACCCCGCGCCCTCGTACTCGACGCCCTCGTACTCGACGCCCGCGCAGCGGAGCCGCAAGCGCAGCCGCGACAGCGTCGACAACACCTCCGTCAGCGACCGCTCACACGACTACGCGCCCAGCGCAAAACGCGTCTCAGAACTAAGGAATTCGCAGAAGAGAAAACGCACCACCAACTACGAAGCTGACTCAGATTACGAAGAAGACACTAGCTTCTCCCCGTACTCGGGAGGGACAGACTCCGACGAGCCGATCTTAAAGCACAAGTTCAAATGCACGGAATGCGACAAAAGCTTCAATACGATAAAGAGTCGCAGCAACCACATGAGAATTCACATTAAAAGTCAGAATTTGGGTAAGGACGAGGTTGTTAATATTCCGAAGAAGGTTGTCAAAGAAGACGCTACAGATTCGGACGAGAAGCTAGCCTGTGATAAGTGCGGGAAGACTTTCAAGTTGAATATAATGCTGAAACGGCACCACGACCTGTGCGGTGTGCAGGCGGAGTCGTGCCCGAAGAAGGTATTGATGATCGCGCTGGAGCCGATCGACGCGGTGCCAAAGCCTAGTGTTAAGAATGAATGTGAGTATTGCACGGCCAAGTTTAAAACTGTCGAGAATCTGCAGAAGCATTTGCGGGTGGTGCACGCTGCTACGTTGAAGACTGAACAGTCTCCGAGGCGGAGCACTGTGTCCGTCCCGTGCGTCTACTGTCGGAAGTCGTTTGATGACTACTACGTGTATACAGCTCATGTGAATAGTTGCAATAAGAAGTGTGAGTTGGAGGGTTTCGAGTGTCCGTTGTGTAAGAGGATTATGGGGAAGCGGGCGGCGTACTTTGTTCATGTGAAGAATAAGCACTTCGAGCCCCGGGCTCCGAAGGTCGAGGCGGAGGGCAGGAAGGACTCGCTGGAGTGCCGCATGTGCAGCAAGGTACTGCCGTCGCAGGCGCAGCTCATCACGCACCTCGCCGCGCACATGTCCAAGATAGACAACATTCCTGACGAGATGGCGGACGATGACTCGAGGGCCAGTACGATCGGCGACTCCGGTTCGATAGGATCAGAGTACGGCTCCTCGCACGTCTCGACAGGCCCGCTGAGATGCAACTTGTGCGACAAAGCCTTCACATACAAGAAGGCGCTAGAAACGCACCAACAGAGAGTTCACTCGTCAACGAACATACCTGTGAAGGTCGAACCGCCCGATAAAAACTCTAGTCTGCTAAGCGAGACGAGTCAACCCGGCCCCGAGTCGGAGTCGGAATCTAGTCAGGAGGAGGGAGACGACAACACCTGTGATATATGCGAGAAGCAGTTCTCGTACAAGCGGCTGTTGATCCAGCACAAGCGGACCAAGCACAACATGAGCTCCGGCACGAAGCGGGCTAAAATCAACCTTAAAGACTGCTCGGTGCGGTGCCTCATCTGCGACATCGAGATGAAAGTGAGCGCCATCAACGAGCACAACCAGAAGCACATCTCGATCAACATAAAGCCGCGCAACGTGTACACGTGCGCGGAGTGCGGCGACCGCTTCAAGAGCTGCAGCTCCCTCGCGAGCCACATCAAGTTCGTGCACCGGCTGCAGCAGCCCAAGGCGGCCAAGGCGCCCCGGGCCCTGGAGGGCGGCTCGGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGACTTTGGAGAGGTTCCGGGAGGCTCGGCGGCCGCGCCCGTAGTCAACCTGGGCGGGTTCACCTGCCCCATCTGCGGGAAGACGATGCCGACGCTGATATCCCTCAAGAGGCACGTCAACTGGCACGAGAATGTCGGGAACAATTTGGAGAAAAACATTGAGTGCTTCGTCTGTAAAGAGACATTCCGTTTCAAGGGGCACTTCAAGCTGCATATGCGCACACACTACAAGGACCCGAACTTGGACCCGAAGCACCTGACGTGCAGCATCTGCCAGCGCCGCAGCAAGCACCTGCGGGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGAACAAGGACTACGAGTGCTCCATCTGCAAGCGCGTCTTCCAGCACAGGAAGGTCTACCTCTCGCACATGGCCATACACTACAAGCGCGGCGAGAGCGTCCAGAACACGATCGTCGGCGACGTGCAGACGGCCGACCGCGTCGCCCTCGACGGCTCGCACACTTGCTCGCTCTGCGGCAAGGTCTGCGACTCGGAGAACTCCCTCAAGCACCACGTCAGCTGGCACAAATCCAAGTCCTCCCTCTACGGAGCGCGACACGAATGCGTCATCTGCCACCTGGTCTTCACCAACAAGAGGCGCCTGGAGATACACACCAGGACGCACTATGAAGACGAGAACGGCCCCTACAAGTGCACCATTTGCGGCAAGGGGTACATCGATGAGGACTACTACCGTCGCCACGTCAAAGGGCACAACTTTGATAACCAGGTCCATAAGGACCGGATCGCGAAGCTAAGAAAAGACAAGGTCAAGTGCCCGATATGCGCTCGCTTCTACCCGGACCTCATCCATCTGATTCGCCATTTGAGGAGAACTCATCCGGAGAGTAAGATGATCAAAACTGACCCGGACGCTCCTCCTCCCAACTACTACTCGTGCAAACTATGCGCCAAAGTGTTCCTCGACGAGCACAGACTAAAGAAGCATGAGGCTGCGCATCTGAGGAAGCCTCTTTTCTATAAGTGTAAATTCTGCGGCAAGAACACAACGTCACTAAAGGTTCACAATCTGCACGTCAAGTCGCACTTGTGCCAAAAATATCTGGACGATCCTCTGAAGTGCCCGCACTGTAACGAGAAATTCTACAAAGGTTACCATCTGCATTATCACCTGCGGGATGTCCATCAAATTAACGAGACCTGGATAGCGGAACGCACGGAGCCGACGTTGAACGGGCCGCTCAAAGAGTTCCAGTGCTCCGTTTGCCTCAAGGTGCTCGCAAGCAAAGGCAACTTCGAGAGGCATATAGACTACCACAACACCTTACGCTGCAACTACTGCTTCGTTTACTTTAGTACTCTTAGATTTCTGGAGGGACATTTGGCGTTCAGCTGCGAGAAGAAACAACTGATCGGTGACACGGAGATTTATCCGAAGAAAATTAAATGCCAAGAGTGTTACAAGGCTTTCCACTTGCAAGTGAAGCTGGATTGCCATCTGCGTACTCAGCACGGTATAAAAGTGAACAAAGAGGCGTCTCTAGGCAAGAAGGAGACTGTTTGCGATTACTGCTTTAGAGTCTTCGAAAATGAGGAAGCTCTCACTTCGCATAAGGTGTACCACCGCACGATCGGCTATCTCGGCTGCATATATTGTAAGCGAAAGTTCAATACGATGACTCTCTACAGGAAACACAAGAACCATCATTTCGCTCAGCTGAATGTTGATAATCCTACGAAGTGCGAACATTGTGATGAGACCTTCGTCGCCTTCCGGGAAATGATCTACCACATGCGTGACGTGCACGGAGACGACAAAGACTGGGTGGTGCTTCCGAAGGATTCCATAGAGGAGACATGTCCGATATGCAACAAAGTATTCTTCAATCTTCACAGACATTTGGACTACCATGAGGAGAATAGGTGTAAGAAATGCGCAGAGTACTTCTTTTCGAGAGTCGATTTCGACAACCATCTGTGCGCAATCGACAGCGACGAGGAGAGTATGCAGAATAACGAGAACAGTTTGATCCCGGCGTACGAGGAGTGCCGTTTCTGCTTCAAGCCGATAACGAGGATCAGTTCCAAGGCGAAGCACGATGGCATACACAAAGGCTCCGGGTCTATATCTTGCCGGTTCTGCCCTCTCAAATTTAAGACGATAGACGCGTTTAATATCCACGCGTTCTCGCACAGAAGTAGGAAGTACAATAAGAGGCCGATAAAGTGCAGGATGTGTGGGGAGAAGTTCGTTAAGTACGGGCCATTCATGAAGCATATGAAGCTGGTGCACAAGTCAGCGAAGAAGGTGCATTACCGCGCGCAGGTGATGCCGGAACGGTGCGTCGTGTGCGGAGATGACTTCCCAAACCTTCACAACCACTACCGCGCCCACCTGCAGAATCAATGCCAGCAGTGCTTCAAGTACTTTACGTCGTCCAAGCTGTTCTCTCGGCACCGGTGCGACCAGGAGGACTCCGACCCCTCCAAAGTATTCGTCTGTGACGAGAACCTCCCGGCGTTGATCAACGCGTACGTTCCCAAGGATTTGAAAGACGACGAAAAGTTTTACGGCTTCAGCGACCAGGAAGATGAGGTGAACGGAATAGATAATACAGAACCTGATAATGTTCCGGAAGAAAAGCCGAACGTGATAAACGATGACGATAGTCAGAGTCAAACTGGCGATCAGATTGCTTCGAACAACTTTACGGAAGAGCAGGATGAGGCTCTTGACGATGAGAAGAATCTGCATTTAATGGTCTCCTCGCCTATCATATCTGACGTTTTGTCTCTTTACCAGCACAAAGAAGATGATAACAGTGATAAAGATGTCGTCATTTTGACAGATGATGACTCTATGGATGTTGACGTCAGTGTACCAGTTATAACGATTGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFAVDNALQLAEMVMECARVKIYEGDGLPDKICTECVQKLSSAYIFKQQCERCDQELRRNYVPPPGFSITPPPPNRQSSDSAFSTHTDVSNQTKPSSSNDTYPAPSYSTPSYSTPAQRSRKRSRDSVDNTSVSDRSHDYAPSAKRVSELRNSQKRKRTTNYEADSDYEEDTSFSPYSGGTDSDEPILKHKFKCTECDKSFNTIKSRSNHMRIHIKSQNLGKDEVVNIPKKVVKEDATDSDEKLACDKCGKTFKLNIMLKRHHDLCGVQAESCPKKVLMIALEPIDAVPKPSVKNECEYCTAKFKTVENLQKHLRVVHAATLKTEQSPRRSTVSVPCVYCRKSFDDYYVYTAHVNSCNKKCELEGFECPLCKRIMGKRAAYFVHVKNKHFEPRAPKVEAEGRKDSLECRMCSKVLPSQAQLITHLAAHMSKIDNIPDEMADDDSRASTIGDSGSIGSEYGSSHVSTGPLRCNLCDKAFTYKKALETHQQRVHSSTNIPVKVEPPDKNSSLLSETSQPGPESESESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNMSSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQKHISINIKPRNVYTCAECGDRFKSCSSLASHIKFVHRLQQPKAAKAPRALEGGSELADFCEVVVTKAEPLDELQSHNDFGEVPGGSAAAPVVNLGGFTCPICGKTMPTLISLKRHVNWHENVGNNLEKNIECFVCKETFRFKGHFKLHMRTHYKDPNLDPKHLTCSICQRRSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQHRKVYLSHMAIHYKRGESVQNTIVGDVQTADRVALDGSHTCSLCGKVCDSENSLKHHVSWHKSKSSLYGARHECVICHLVFTNKRRLEIHTRTHYEDENGPYKCTICGKGYIDEDYYRRHVKGHNFDNQVHKDRIAKLRKDKVKCPICARFYPDLIHLIRHLRRTHPESKMIKTDPDAPPPNYYSCKLCAKVFLDEHRLKKHEAAHLRKPLFYKCKFCGKNTTSLKVHNLHVKSHLCQKYLDDPLKCPHCNEKFYKGYHLHYHLRDVHQINETWIAERTEPTLNGPLKEFQCSVCLKVLASKGNFERHIDYHNTLRCNYCFVYFSTLRFLEGHLAFSCEKKQLIGDTEIYPKKIKCQECYKAFHLQVKLDCHLRTQHGIKVNKEASLGKKETVCDYCFRVFENEEALTSHKVYHRTIGYLGCIYCKRKFNTMTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKDWVVLPKDSIEETCPICNKVFFNLHRHLDYHEENRCKKCAEYFFSRVDFDNHLCAIDSDEESMQNNENSLIPAYEECRFCFKPITRISSKAKHDGIHKGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYNKRPIKCRMCGEKFVKYGPFMKHMKLVHKSAKKVHYRAQVMPERCVVCGDDFPNLHNHYRAHLQNQCQQCFKYFTSSKLFSRHRCDQEDSDPSKVFVCDENLPALINAYVPKDLKDDEKFYGFSDQEDEVNGIDNTEPDNVPEEKPNVINDDDSQSQTGDQIASNNFTEEQDEALDDEKNLHLMVSSPIISDVLSLYQHKEDDNSDKDVVILTDDDSMDVDVSVPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -