Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: -
Assembly: GCA_037074685.1
Location: JAYKKO010000001.1:13967131-13981858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0011 0.11 14.0 0.8 1 20 147 166 147 168 0.94

2 13 0.0013 0.13 13.7 0.0 2 20 182 200 182 204 0.95

3 13 0.0027 0.26 12.8 0.2 1 23 243 265 243 265 0.95

4 13 0.057 5.5 8.6 0.1 2 23 339 361 338 361 0.93

5 13 0.28 27 6.4 0.1 2 20 367 385 366 387 0.90

6 13 0.00026 0.025 16.0 1.8 1 23 395 418 395 418 0.97

7 13 4e-07 3.9e-05 24.8 2.4 1 23 439 461 439 461 0.99

8 13 1.7e-07 1.6e-05 26.0 2.9 1 23 466 488 466 488 0.99

9 13 2.9e-07 2.8e-05 25.2 2.3 3 23 501 521 499 521 0.96

10 13 2.9e-05 0.0028 18.9 3.2 1 23 527 549 527 549 0.99

11 13 9e-07 8.7e-05 23.7 2.5 2 23 556 577 555 577 0.96

12 13 1.5e-07 1.4e-05 26.2 1.5 1 23 583 605 583 605 0.99

13 13 0.0012 0.11 13.9 0.6 1 23 611 633 611 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0011	0.11	14.0	0.8	1	20	147	166	147	168	0.94
2	13	0.0013	0.13	13.7	0.0	2	20	182	200	182	204	0.95
3	13	0.0027	0.26	12.8	0.2	1	23	243	265	243	265	0.95
4	13	0.057	5.5	8.6	0.1	2	23	339	361	338	361	0.93
5	13	0.28	27	6.4	0.1	2	20	367	385	366	387	0.90
6	13	0.00026	0.025	16.0	1.8	1	23	395	418	395	418	0.97
7	13	4e-07	3.9e-05	24.8	2.4	1	23	439	461	439	461	0.99
8	13	1.7e-07	1.6e-05	26.0	2.9	1	23	466	488	466	488	0.99
9	13	2.9e-07	2.8e-05	25.2	2.3	3	23	501	521	499	521	0.96
10	13	2.9e-05	0.0028	18.9	3.2	1	23	527	549	527	549	0.99
11	13	9e-07	8.7e-05	23.7	2.5	2	23	556	577	555	577	0.96
12	13	1.5e-07	1.4e-05	26.2	1.5	1	23	583	605	583	605	0.99
13	13	0.0012	0.11	13.9	0.6	1	23	611	633	611	633	0.98

Sequence Information

Coding Sequence: atgGCTTCTGCTTCGCAagctgtaaaaattaaaattgaggaTATATGCAGAACATGCCTTTCCAAAGAAAATGAATTACATTCTGTGTTTGACATTTCCATCGGTAATGTAACACTTGATTGTGTGATCGCTGAATTAACTGGGATAAAGATTCAACAATGTGATGGGCTACCGTCTACTGTTTGTCATTTGTGTAAAGAGAAAGCTAGTAAAGCCTATGAATTCAAAAAACAGTCTCAAGATGCAAATGCAACCCTACATagcgttttcaaaaaagaaGAAACAGAATTGCTTCAGGATAATCCTTCAAGTGCTGATATTAAGACAGAAAATACAGCAGTCGAAGACAATGATTATGATGATTGGATTGGGTTGGATGATTTCAGTGAAATTGATGCAGTCAAGGATGAGAATTATCAGGAAGATAAAGAAGTAATTTATCAATGTAAAACATGCAGTGTAGTTTTTCAATCTCAAAGTACATTACAGGACCACACGACAAAGAAATGTTTGAAGGTGGAGTTTGAAGATGCTGGTATCAATTATTGTCCCTTATGTGGTGTCAGTTATTATGATGCTGTTAATTTGACAACACACATGTGGGAGAATCACGCAGAATTGATGGGCCCAAAGAAAAGAGGGAGACCTAAAAAGATATTGACAACTACAATACTGACAAAACTATCAGAAAATGGATTCCGTTTGAAAGCCATCACTGGTGATAAATATGACTGCATGTTGtgcaaagaaaaatttaaaactaaggAAGAATTAGGTATACATCTAGTTATCCACAAGGATATGAAAGTGTTGTGCTGCTTATTatgtaagaaaatgtatttgaaaagaAAGAATTTCAACTGCCATTCATGCACTGATGATAAATCAAGTGTGAAAAAAGATGTCGGGTCACTTGATGCTGccgataaaaacaaacaaaattttgtgtCTGAAATGGTTTTGAAAGATCTTCTGGATGCAAATGGAATTGCGGAGAATGTGAATCCAATTCAAGTGTGCGAGGTATGCAGTGGCGTTTTCACGTCTGATGATGAGCTAATGAATCACAACGACACAGAACATCCCGAAAGGTCGCTTCGGTGCAACCTTTGTCTGAAGGTATTTGCTTCTGTGAAATCAGCAGCACGTCATCGAAGTATTTGCAAACAAATTGAAAGGAAACACAAATGCAGCACGTGCGGGCTTAAATTTGCATACGAAATATCATTAAACAAACACATTTTGAGGTATCACGAGGGTCAGAGTGTCTCCGTGAAATTCATGGATACCAAGTCTAAAGACGATGGGAAGCAGTATCAGTGCGACACCTGCAATAAACAGTTTTCTAGAAAAGAATTACTCGCAAAACATACTAGGACACATTCCGACAAATTATATGAGTGTGATATATGTAAGAAGAAATTCAATAGAAGTGATAATCTAAGGTCGCATAAAAGGACACATGACCCGCGCGAGAAAACCAAAGTTAATACCTGCTTATGTCTGTACTGCGGCCGCAGCTTCAATAATTCCTCCAATCTAATTGTCCACATGCGCCGTCACACTGGAGAGAAACCTTACAAATGTGATTTTTGTGGAAAGGGTTTCCCTCGATCGTCCGATCTTCAGTGTCACAGAAGATCACATACTGGCGAAAAACCTTGCGTTTGTCGTATCTGTGGAAAagGTTTCTCACGTAGCAATAAATTGTCTCGCCACATGAGAGTTCATACTGGTCTGAAACCTTATAAATGCACCTATTGCGAGAAGGCCTTCTCTCAAAGTAACGATTTAACATTACACATACGCCGACATACTGGCGACAAGCCATACATTTGCGAAATCTGTGGAGATAGGTTCATTCAgGGAACAGCACTACACAATCACAGGCGTACCCATGGCCACTTCCCGCCGCCAGCCTCAAATCCACAAAACCAACCAGGCTCGATCGCATATACTGTCCAAAACATCACCCATCAGACTACTGATCAGTAA
Protein Sequence: MASASQAVKIKIEDICRTCLSKENELHSVFDISIGNVTLDCVIAELTGIKIQQCDGLPSTVCHLCKEKASKAYEFKKQSQDANATLHSVFKKEETELLQDNPSSADIKTENTAVEDNDYDDWIGLDDFSEIDAVKDENYQEDKEVIYQCKTCSVVFQSQSTLQDHTTKKCLKVEFEDAGINYCPLCGVSYYDAVNLTTHMWENHAELMGPKKRGRPKKILTTTILTKLSENGFRLKAITGDKYDCMLCKEKFKTKEELGIHLVIHKDMKVLCCLLCKKMYLKRKNFNCHSCTDDKSSVKKDVGSLDAADKNKQNFVSEMVLKDLLDANGIAENVNPIQVCEVCSGVFTSDDELMNHNDTEHPERSLRCNLCLKVFASVKSAARHRSICKQIERKHKCSTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKSKDDGKQYQCDTCNKQFSRKELLAKHTRTHSDKLYECDICKKKFNRSDNLRSHKRTHDPREKTKVNTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRICGKGFSRSNKLSRHMRVHTGLKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEICGDRFIQGTALHNHRRTHGHFPPPASNPQNQPGSIAYTVQNITHQTTDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961163;
90% Identity: -
80% Identity: -