Gpyl023216.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000026.1:2211600-2217769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.077 7.4 8.2 0.4 6 21 183 198 179 199 0.92 2 13 0.00038 0.036 15.4 1.0 2 23 216 237 215 237 0.97 3 13 0.00032 0.03 15.7 3.4 1 20 245 264 245 266 0.95 4 13 0.0093 0.89 11.1 0.5 2 23 293 314 292 314 0.95 5 13 3.4e-05 0.0032 18.7 2.7 1 23 322 344 322 344 0.98 6 13 0.00029 0.028 15.8 1.9 1 23 352 375 352 375 0.96 7 13 5e-06 0.00048 21.3 3.5 1 23 409 431 409 431 0.98 8 13 1.2e-06 0.00012 23.3 0.9 1 23 437 459 437 459 0.96 9 13 3.9e-06 0.00038 21.7 0.7 1 23 465 487 465 487 0.99 10 13 6.9e-07 6.7e-05 24.1 0.7 1 23 493 515 493 515 0.98 11 13 6.2e-05 0.006 17.9 0.3 1 23 521 543 521 543 0.98 12 13 6e-05 0.0058 17.9 2.1 1 21 549 569 549 571 0.96 13 13 1.7e-07 1.6e-05 26.0 0.4 1 23 577 599 577 599 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGACAAACGGTCCCAATTTCGACAAAATGTGCCGGACTTGTCTGCTAGAATCAACTCGGATGGTCTCGCTAACAACCATTTTGGAGGACGGCAGGCGTACGATGAACGACCTGCTTTTATTCGTGCTAAATAACAAGCTTACTGTAGGCCCGAAGTTTCCTCAACAAATATGCGGCGACTGCGAACTGTTACTGTGTAAATTAGACGATTTCAAACGCCGCTGCAACGATTCCGAAAAGTTTCTGAAAGAGATTCTGAATGTGACCGATTTCGACTCTCTTCAAGATGTTAAGCTCGAATCTTCGTCAAAATTGGATAAACAAGCGTCAGTCGAGCATTACCTCGAACTTCAACCAATGACCACGATATTGCCTATAAAGAAAGACGCAAATAACGATAATGAAGACGTCAGAAAAGGTTCTAAAGTAGAAGACAAACCTGCAATTAAAGAAGAATTTAACGATGACTTCTCAGACGGTTTTGACGATAATTTCGACGATAACGATGAATTCGACGGCAAGGAATCCTTCACGTGCCCCTGTAGAAAAACATTTACAGATTCTAAAGAATACCAAACTCATTTGGAAAGCGAAGACTGTGTTAAAACGTCAAATAATGATCTATTATCAATACCGGTTAAATGTGAGAGGtgtaacatagtttttaagaataCAAAGgcctttaaaatacatacacgAATACATAATAGTGCGAATAGACCAATTTATTCATGTACGCACTGCTCGCGgaagtttaaaaagaaaaccagCTTACAAACAcatttagaaaacaaaacatGCAGGAAACCTGTCAAAACGAAAGTGAAAAAAGAGGAGCTGCCAAAAAAGGACGCACTGGTTATGCCCGTAAAATGTGAACCGTGCGATGAAGTTTTCAAAACGATGAAACTGTTCAAGATTCACTCTCGTATGCACAAAACTGAAAAGCCGGAATCATATCAGTGTTCATCGTGCACAAGGACGTTTAAAAAGAAATCGTCCCTCGTAATACACTTGAAGAATCATGAGCAGAGAGACAATGTCAAATATATTTGTAGTACATGTAAAAGAGAATTTAAATACCGTGCGCACTTAGACAACCATATTTTATCCGAACATAATTCCAAAAAAGGACTTAAATTATTATCGATATACCCTGTGGAGCCCGTTGTGAGTGAGGGTTCGGATAAAAATGCAGCTTCGTCCACAGATAAAAAGCATAGTTGTAACCTTTGTAGTAAATCCTTTACAATGTTGTCCACGTTGACGGACCACATGAGGACACACACCGGAGAGAGACCATTCCTTTGTTCAGTGTGCGGGAGAGGCTTCACGCAGAAGACTAACCTGGGTCAGCATATGAGACGCCATTTTGGAGTCAAGCCTTATAAGTGTAATGAATGTGAACGAAGgttcGTCTCCAAAGGTGAACTGGATGCTCATACCCGCAAGCATTCCGGTGCACATCCCTTTGTATGTGATGAGTGCGGGAACGGATTCACCACATCCTCATCTCTCCGGAAACACAAGAGGGTGCACACCGGGGAGCGACCGTACGCCTGTGACTTGTGCCCGATGAAGTTTGCTGTTTCAGGAACTCTGAAGAGCCACCGTCGCACCCATACGGGCGAGAAGCCCTACCAGTGTTCGTATTGCGAGAAGGCGTTCGTCCAGCGCCAGGACCTGGTGTCACACATCCGCTGCCACACCGGAGAGCGGCCCTTCGCGTGCCCACATTGCGGGCAGGCGTTCAGAAAGCCGTCGGCACTGAAAGCTCACGTGAAGACTCATAAGATACTGTCGCAgccgccgcctccgcctccgctgGGGCAGCTGCAGCCTCTAGGGCTCTTCCAAGGGCTCCACGGAGCCGGCTGA
- Protein Sequence
- METTNGPNFDKMCRTCLLESTRMVSLTTILEDGRRTMNDLLLFVLNNKLTVGPKFPQQICGDCELLLCKLDDFKRRCNDSEKFLKEILNVTDFDSLQDVKLESSSKLDKQASVEHYLELQPMTTILPIKKDANNDNEDVRKGSKVEDKPAIKEEFNDDFSDGFDDNFDDNDEFDGKESFTCPCRKTFTDSKEYQTHLESEDCVKTSNNDLLSIPVKCERCNIVFKNTKAFKIHTRIHNSANRPIYSCTHCSRKFKKKTSLQTHLENKTCRKPVKTKVKKEELPKKDALVMPVKCEPCDEVFKTMKLFKIHSRMHKTEKPESYQCSSCTRTFKKKSSLVIHLKNHEQRDNVKYICSTCKREFKYRAHLDNHILSEHNSKKGLKLLSIYPVEPVVSEGSDKNAASSTDKKHSCNLCSKSFTMLSTLTDHMRTHTGERPFLCSVCGRGFTQKTNLGQHMRRHFGVKPYKCNECERRFVSKGELDAHTRKHSGAHPFVCDECGNGFTTSSSLRKHKRVHTGERPYACDLCPMKFAVSGTLKSHRRTHTGEKPYQCSYCEKAFVQRQDLVSHIRCHTGERPFACPHCGQAFRKPSALKAHVKTHKILSQPPPPPPLGQLQPLGLFQGLHGAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -