Gpyl028136.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glyphodes pyloalis
Gene Symbol
-
Assembly
GCA_037074685.1
Location
JAYKKO010000035.1:3241817-3249514[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00054 0.052 15.0 0.6 1 23 67 89 67 89 0.98
2 26 0.06 5.8 8.5 0.0 2 23 115 137 114 137 0.96
3 26 0.015 1.4 10.4 0.6 2 23 160 182 159 182 0.95
4 26 0.041 3.9 9.0 7.6 3 23 190 210 189 210 0.97
5 26 0.022 2.1 9.9 0.7 2 23 216 238 215 238 0.95
6 26 0.19 18 6.9 1.6 1 23 242 265 242 265 0.98
7 26 3e-05 0.0029 18.9 0.7 2 23 272 294 271 294 0.97
8 26 0.00018 0.017 16.5 0.4 3 23 302 322 300 322 0.96
9 26 8.5e-06 0.00082 20.6 1.7 1 23 328 351 328 351 0.98
10 26 3.7 3.6e+02 2.9 2.2 1 23 419 441 419 441 0.97
11 26 0.088 8.5 8.0 3.9 2 23 512 534 511 534 0.93
12 26 0.026 2.5 9.7 0.0 1 23 543 566 543 566 0.92
13 26 0.002 0.19 13.2 4.0 2 23 570 592 569 592 0.94
14 26 0.22 21 6.8 0.7 1 23 597 620 597 620 0.94
15 26 3.6e-05 0.0034 18.7 1.0 2 23 628 650 627 650 0.96
16 26 0.0011 0.11 13.9 0.2 2 23 657 678 656 678 0.97
17 26 0.0001 0.0098 17.2 0.8 1 23 684 707 684 707 0.95
18 26 2.7 2.6e+02 3.3 0.1 2 23 796 818 795 818 0.88
19 26 0.019 1.8 10.1 1.3 2 23 841 863 840 863 0.95
20 26 0.035 3.4 9.3 3.6 1 23 869 892 869 892 0.91
21 26 0.00078 0.075 14.4 5.7 2 23 896 918 896 918 0.93
22 26 0.00028 0.027 15.8 0.8 1 23 921 944 921 944 0.98
23 26 5.3e-05 0.0051 18.1 0.6 1 23 951 974 951 974 0.96
24 26 5.3e-05 0.0051 18.1 0.3 2 23 981 1002 980 1002 0.94
25 26 1.6e-05 0.0015 19.8 2.8 1 23 1008 1030 1008 1030 0.98
26 26 1.7e-06 0.00016 22.9 1.3 1 23 1036 1058 1036 1059 0.94

Sequence Information

Coding Sequence
ATGAGACATCGAAGAAAAGGAGAAGTAAAGAAAAAGGCACGGATTAAAGAAGAAAACAGCCGTCAGTCCAGGCGGGTAAAATTCAAAGAGGAAATAAGCAAGGCGGGCCCCGACGAAAGGACCCTGATCATGAGGAATAACGTCGTACAAGTGCTAACAAACTCCACCGTGATGCCCTTCAGGTGGCTCAAGAGCTCCTACCGATGCTTCTACTGTTACGAAGTGTTCGAAGAGCCGAAAGACCTTAAATCGCATCAGGATGTTCACGCAAACGACGACACGAAACTCAAGTGCATGGAAAACTATTGGGAATCGACAGTGCACGTCGATGTTTCCAAAATAACTTGCAAATTATGCCCTAAAATAATCACGGAGTTCTACGACTTAATAGACCATCTGATAACCGCACATGAAGTGCCGTTCAATAAAGATATAGGCATTTGTATGAATCCATTCAAATTAAACAACATATCCGTGCAATGCGCTCTGTGTTCGAGAGATTATCGTACGTTCGGCCATTTATTACTTCACATGAACGAGGAGCATAAAGGGTATTCTCAATTACTTTGCGACGTTTGCGGGCGGCATTGTAGGAACAAGAATCATTTGAGGGAACACAAGAAGGAACATGTAAATAGGTCGGTGACGTGTACGGTATGCGGCGAGACGTTGACCAGCTACCACAAACTGAGGCCGCATATGCAGAACGTACACAACAAGAAGTACAAATGTCTAGCTTGTCCTGAGCAATTTGAAACTCATTATAAGAGGTCGCTGCATATGATGACGGTGCACAAGAGCAGGGAAGAGGTTAAGTGCCAGTACTGTCCGAAGACTTTCGTGTTCAGGAGCACGATGATGGCGCATCTTAGGGTGACGCATTTGCAGGAGAAGAACACGATTTGTGGGATATGCGGGTGGAGGACGGTTGGGAAGAGCAAATTGAAGAGGCATATGTCGAAGCACAGTAATGAGAAAAACTACAAGTGTACGGTTTGCGAGAAAGCGTTTAAGACGAAGAAGAATATGTTGTTGCATCAGAGGAACGTTCACGAGAAGGAGATGCAGTTGCCACATGGTTACCCCGGTGGTCTGCAGCAGCAGTCTGATGAGTTAGGATGCTGTTTATATACTTCTTCAGCAGAGGAGCACGGAAAGACGTTACAAACACAGAGAAGACAGGAACTCGCCGACCTCTTGAGGAGCATCCTCACAGGCTCCACCCTTATGCCCTTCAGATGGCACGCAGGGAAATACATGTGCTTTTTCTGCACCGCACATTTCTTCGAAGTCTCCAAATTAAGGGGCCACGTCGACACCCATACGGACTTCAATAACGAAATCATCAACAATGCGGTCGCAAAAGACCACAGAATAAAATTGGACGTCGCTCAAATTTGCTGCACTGTTTGCGAAGTAGGACTGCCGTCTTTTGAGGCTTACATTGAGCATTTAGACGAGAGCCATGGTGAGAGGTATGATAGGGAGGTAACAGGTCGACTTGAAGTGTTCAGCTTAAACGACGAGGAGATGTCCTGTTTGGAATGCGAAGAGACGTTCAAGCACTTCTTCCAGCTCTTGAAACATGCTCATAAAGACCACACCGATGTTGAGAAGCACCACAAGTTCTTATGCGAGATATGTGGTCAAGGTTTCCCGGAGATAAGCAGTGTACAGACGCATATAAGTCAGGTGCATTCCGTACAAAGATGCAAGTATTGTCACGAGACCTTCCGGACTTGTTATGCCCTGGACAAGCACGTGGGTACCGTTCACAGAATCGAGAAGTACCAGTGTCCGTTTTGCTTTAAGCTTTTGCCGAATAGATATATGAGAAAGCGGCATTTGGCGCTAGTCCATGATTGGGAGAGCGCTCAGCTGAGATGCGACATCTGCGATAAGATTTTTACTAGGAACAACAAATTGTTGTTGCACAAAAGAAGGGTTCATATGAGGGAGAGGAACGTGTCCTGTGAGGAGTGCGGGGTACAATTTTTTGATCTGGAGGCTTTGGAGAAGCACAAGAAGCGACACAACGATGAAAAGCCGTTTCGGTGTGACTTGTGTAAAGAGGCGTTTAGAAGGAATAGTGAGCTGGTGGTTCATGTCGCTAGCTGCCATGGCACGGAAACGAAACCGATCGACCCGACCGCCGAAAGGGAAGAAGTAGCGCGCCTGATGACCGTCATCTTGGAAAACTCAGGCATGATGCCGTTCCGGTGGTGCGGCAACAAGTACATGTGCTTCTACTGCTGCTGCACCTTCCATGACGTCGCCTGCCTCAGGGATCACACCCGCACCGAACACGAGAACCCGAAACTGTTCAATGTCTTGAAACGCTCCATTGTATCCCGAAGAACACTCAAGCTGGACGTCTCAGACATATCATGCAAGAATTGCCCGAAAACACTTCTCAACCTAGAAGAATTCCTAGACCACGCATCGACGGCTCACGACCTCAAATTCAAGAGAGACGCCAGCAAATCCCTCTTCTGCGCTAAACTTGCAGACGGCGAAATGAAATGCCTGGACTGCAACGAGAGCTTCAAATTCTTCGGCACTCTACTTTCCCACTCCAACAGATACCATAACAGTCAGAATGAGTTCCTATGCGAAGTTTGCGGGCAAGGATTCGCATCAAAAAGCCACGCGTGGAACCACCATCATTACTACCACAGCGAGGCGAGCTGCAGCAAATGCAAAAAGAAGTTCAAGACAAAATACCACCTGAAGATGCATGAGGAAAAAGAGCACAAGGCTTTCCAATGTTCGAAGTGTCCGCAAGCTTTCGGAAGCAGATACCTGAAGAAGCGTCATATGGCGACGGTTCACGACGTCAAGAGCGTTCAATTTAAATGCGACGAGTGTGACAAGGTGTTCATAATGAAGAGTAAGCTGCTGGAGCATAAGGAACGGATTCATTTGAAGCTGAAGACGACTGTGTGCCCAATTTGTGGGTTTAAGGTGTTCAATAAGGACCTGTTGAAGAGGCACATGATCAGACACGACGATTCGCGGCCGTTTGAGTGCGATATTTGCAAAAAGACGTTTCAGCGGAAGAAGACGTTGGAGTATCACAGGAGGATACATACGAGTGATAAGAGGCATGCTTGTAAAGACTGTGGGAAGGCGTTTGTGCAGGTGGCTAGCCTGAAGCTGCATATGCGGGTGCATCATGCGGCCACTGAGAGTGCGCGGTGGGACTGA
Protein Sequence
MRHRRKGEVKKKARIKEENSRQSRRVKFKEEISKAGPDERTLIMRNNVVQVLTNSTVMPFRWLKSSYRCFYCYEVFEEPKDLKSHQDVHANDDTKLKCMENYWESTVHVDVSKITCKLCPKIITEFYDLIDHLITAHEVPFNKDIGICMNPFKLNNISVQCALCSRDYRTFGHLLLHMNEEHKGYSQLLCDVCGRHCRNKNHLREHKKEHVNRSVTCTVCGETLTSYHKLRPHMQNVHNKKYKCLACPEQFETHYKRSLHMMTVHKSREEVKCQYCPKTFVFRSTMMAHLRVTHLQEKNTICGICGWRTVGKSKLKRHMSKHSNEKNYKCTVCEKAFKTKKNMLLHQRNVHEKEMQLPHGYPGGLQQQSDELGCCLYTSSAEEHGKTLQTQRRQELADLLRSILTGSTLMPFRWHAGKYMCFFCTAHFFEVSKLRGHVDTHTDFNNEIINNAVAKDHRIKLDVAQICCTVCEVGLPSFEAYIEHLDESHGERYDREVTGRLEVFSLNDEEMSCLECEETFKHFFQLLKHAHKDHTDVEKHHKFLCEICGQGFPEISSVQTHISQVHSVQRCKYCHETFRTCYALDKHVGTVHRIEKYQCPFCFKLLPNRYMRKRHLALVHDWESAQLRCDICDKIFTRNNKLLLHKRRVHMRERNVSCEECGVQFFDLEALEKHKKRHNDEKPFRCDLCKEAFRRNSELVVHVASCHGTETKPIDPTAEREEVARLMTVILENSGMMPFRWCGNKYMCFYCCCTFHDVACLRDHTRTEHENPKLFNVLKRSIVSRRTLKLDVSDISCKNCPKTLLNLEEFLDHASTAHDLKFKRDASKSLFCAKLADGEMKCLDCNESFKFFGTLLSHSNRYHNSQNEFLCEVCGQGFASKSHAWNHHHYYHSEASCSKCKKKFKTKYHLKMHEEKEHKAFQCSKCPQAFGSRYLKKRHMATVHDVKSVQFKCDECDKVFIMKSKLLEHKERIHLKLKTTVCPICGFKVFNKDLLKRHMIRHDDSRPFECDICKKTFQRKKTLEYHRRIHTSDKRHACKDCGKAFVQVASLKLHMRVHHAATESARWD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-