Gpyl001408.1
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000001.1:24083611-24084924[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7 3.7e+03 -1.3 0.0 29 45 65 81 65 81 0.80 2 2 4.2e-12 1.6e-09 38.2 0.1 1 40 94 133 94 137 0.94
Sequence Information
- Coding Sequence
- ATGTCTAGAAAACGTGTTGCCCTAGTAGAGGAGGAGATCGAACGAGCTTCGTTGGATATGTTAGAGGAGCCAGAGTTCAACCCTTGTATATCAGAGGATGATAACGAGAGTGATACTGAGAGTGAAGCTGAGTATTCCACTGACAGTGATCTTTTGAAAGTTTTAGATTCAGATTCTGACCAAACTCCACAACCTGCTTCTGTCCTGAAGGAAGTATTTATGGGTGCCACCACTTCTCAAAggcCTATAACAACAATGCCCCCAAAACGAGCATTGTGGTCTGAGGAAAACCTGGAAGCGGCGGTACGAGTAGTACAGCGTGGACGGCTGAGCACATACAAAGCTGCCGAAAGGTACAAAGTGCCCAGAAGAACTATCAGGAACCACCTTCAGACCGGCAGTTTAAAAAAAGTCTTGGGGTCGGAAACCTTTACTTAG
- Protein Sequence
- MSRKRVALVEEEIERASLDMLEEPEFNPCISEDDNESDTESEAEYSTDSDLLKVLDSDSDQTPQPASVLKEVFMGATTSQRPITTMPPKRALWSEENLEAAVRVVQRGRLSTYKAAERYKVPRRTIRNHLQTGSLKKVLGSETFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -