Gpyl007814.2
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- -
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000006.1:18512561-18525143[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.7e-11 1.4e-08 35.2 0.0 1 39 182 221 182 225 0.89 2 5 1e-10 3.9e-08 33.8 0.2 2 39 237 274 236 277 0.92 3 5 3.1e-08 1.2e-05 25.9 0.3 2 30 292 320 291 321 0.94 4 5 2.9e-11 1.1e-08 35.5 0.1 11 45 359 394 358 394 0.95 5 5 3.6e-17 1.4e-14 54.5 0.0 1 41 401 442 401 445 0.92
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGGGGTGTCCCACGTGAAGTGTGAGCCGCCTTCGGACGAGGAAGACAGCAATTCGCAGTACTCCCTCGGGTACTTGACCAATCAGCCATCATTGCTAGGGCACTGTGCTGTGAAGATAGAAAATGGCATCCAACACGAAACCAATGACTCTGGACACATTTTACAACATTTGCAGTTTAAAGCAAGTTTTGAACAGACGGGGTTGGAGGAACTGGCACCGCCGGCGCCGGCGGGGCCCGCCGCCACGCCGGTCTGCGTCAAACAAGAGCCGCCGGACGCGCCCCCCGCGCTCACCCTGGAGAACCTCGAGCCCGCACCAGCTGCTAGTTCTACGGGTTCAACGTTGCTGGACAGACATATGGCAATGCTCAGTTCAAATCAAGTGCCTGAGTCCACGGATTTTATGCCACTCTTGGCCGTCAAGGACGAACCACTGTCCGAAGGAGAGCAACATCATATGAGCGGGTCGGACACGAGCGACTCGTGCGGGCCGGCCGAGCCGAGCGCGCCGCGCGGCAGCCCCAAGAGCTGGACGCCGCGCGACATGGACCGCGCCCTGCACGCGCTACGGACGCACCACATGAGCCTCACTAAGGCTTCAGCGACATACGGTATCCCCTCGACGACGCTCTGGCAGCGCGCGCACCGACTCGGCATCGACACGCCAAAGAAGGAAGGTGCATCTAAGTCCTGGAGCGAGGCTGACTTGAAGGGAGCGCTGCATGCCCTGCGAGCTGGCGCTATATCGGCTAACAAGGCGAGCAAAGCGTATGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTCGCCTCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGTGAGCAAAGCGAACCTCACACCTCGCTGCCCCTGCTAGTGCAATATCAACGCCTCCATCCGCGCAGGCGCCGCCTCCGTGCAGCGCGCCGCCTCGCATGCAATATCAACGCCTCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGAACATTATACGGACGGTGCAAACGAGAAGGCATTGAATTATCTCGTTCAAATCCGACGCCGTGGTCTGAAGACGCTATGGGGGAAGCATTGGAAGCAGTCAGaGTGGGCCAGATGTCAATTAACCAAGCAGCCATTCACTACAACTTGCCCTACTCTTCTCTCTACGGCCGTTTCAAGAGGTGCAAGTTTCAAACTCAGGTCCTCCAACCAATGCAACAACAGGACATGCACAAAACCATTGAAATGGACCAGCAACCTCACCCGCCAGAGATGTACTACCAGCAGGTGCAGCCGGGCCCCTCCGCCGACGAGGCGGCCCAGCAGCCGTACTATCACGCCACCGCCCTCAGCGACCCTATGTCTAGTAGCATGCTCCACGAACAGTACTACGGCGGGATGTATTACAGCCAGAACTGTAATGGGATACTGACCAGTTGA
- Protein Sequence
- MPGHGVSHVKCEPPSDEEDSNSQYSLGYLTNQPSLLGHCAVKIENGIQHETNDSGHILQHLQFKASFEQTGLEELAPPAPAGPAATPVCVKQEPPDAPPALTLENLEPAPAASSTGSTLLDRHMAMLSSNQVPESTDFMPLLAVKDEPLSEGEQHHMSGSDTSDSCGPAEPSAPRGSPKSWTPRDMDRALHALRTHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRAGAASVQRAASQYGIPTGEQSEPHTSLPLLVQYQRLHPRRRRLRAARRLACNINASIRAGAASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKFQTQVLQPMQQQDMHKTIEMDQQPHPPEMYYQQVQPGPSADEAAQQPYYHATALSDPMSSSMLHEQYYGGMYYSQNCNGILTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -