Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.4e-08 0.001 20.4 18.7 1 19 35 53 35 53 0.99

2 10 3.2e-06 0.073 14.4 15.5 3 19 101 117 95 117 0.85

3 10 0.00039 8.9 7.7 7.7 1 11 157 167 157 168 0.95

4 10 0.03 6.8e+02 1.7 1.0 4 10 172 178 171 178 0.90

5 10 1.4e-09 3.3e-05 25.1 11.7 1 19 184 202 184 202 0.98

6 10 2 4.5e+04 -4.4 1.1 6 10 231 235 231 235 0.83

7 10 2 4.5e+04 -5.6 13.3 1 19 241 260 241 260 0.71

8 10 0.96 2.2e+04 -3.1 0.4 9 11 278 280 278 281 0.74

9 10 4.5e-06 0.1 13.9 16.6 3 18 298 314 286 319 0.79

10 10 0.0041 93 4.5 12.4 1 16 325 340 325 346 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.4e-08	0.001	20.4	18.7	1	19	35	53	35	53	0.99
2	10	3.2e-06	0.073	14.4	15.5	3	19	101	117	95	117	0.85
3	10	0.00039	8.9	7.7	7.7	1	11	157	167	157	168	0.95
4	10	0.03	6.8e+02	1.7	1.0	4	10	172	178	171	178	0.90
5	10	1.4e-09	3.3e-05	25.1	11.7	1	19	184	202	184	202	0.98
6	10	2	4.5e+04	-4.4	1.1	6	10	231	235	231	235	0.83
7	10	2	4.5e+04	-5.6	13.3	1	19	241	260	241	260	0.71
8	10	0.96	2.2e+04	-3.1	0.4	9	11	278	280	278	281	0.74
9	10	4.5e-06	0.1	13.9	16.6	3	18	298	314	286	319	0.79
10	10	0.0041	93	4.5	12.4	1	16	325	340	325	346	0.87

Coding Sequence: TGTTATTGCCCGCGTGAGACTCTGCGCAGCGTGGAGTGTGCGGCGGACTCGGCCGGCGTGCTGGGCTTCAGCTGCAGCCAGGAGTGCGCTCGCAAGCTGGACTGCGGCCAGCACGACTGCCAGCTGCCATGCCACGAGGGGCCGTGCCCCGGCTGCCCACTTGTACCAGCCAGAGTCACCCGCTGCCCCTGCGGACAGACATTGTTAACGGCCGAGCAAGCTCGCAAGTCCTGTCTAGACCCGGTGCCCACGTGCGGGAAGGAATGTCTGCTGCCGCTCAGCTGCGGCCCAGACGGATCCCTGCACTTCTGCAAGTCACCCTGTCATCATGGGGCTTGTCCACCTTGTCCCGAGAAGACCCAGGTTTCTTGCCGCTGCGGGCACATCACCAAGAACTTGCTCTGCACGGAACTAGAAGCCCAGcgcaataatgtattttgtggCAAGAAATGCACCaagAAACAGTCTTGTGGCCGTCACCGCTGCAAGACACTGTGCTGCGTGGACGCTGAACATCGCTGCCCGCTGCCGTGCACGCGCACGCTCTCCTGCGGCCTCCATCGCTGCGCCGCCACCTGCCACAGCGGACACTGCGATCCCTGCTGGAGGACTAGTTTTGATGAGCTGAGTTGCCGTTGTGGGGCGGCGGTGCGCTACCCCCCGGTGGAGTGCGGCGCGCGGCCCCCGGTCTGCTCGCAGGCATGCAGCGTGATGCTCCCCTGCGGCCACCCGCCGCTGCACACCTGCCACCCCGCCACCACCCCCTGCCCGCCCTGCACCGTCCTCACACAGCTCTACTGCCATGGCCGCCACAAGATGAGGAAGACAATTCCCTGTCATCAGGAGGACTTCTCGTGCGGCCTGCCGTGCGGCAAGGACCTGCCCTGCAAGAAGCACAAGTGCATCGAGATCTGCCACAAGGGGAACTGTCCATCTGTATGCAAGCAGCCGTGTGAGGGCGTCCGCGGGAGTTGCGGGCACGCGTGTGGGGCGGCCTGTGGGCACGAGGGCCCCTGCCCGGCGCGGGCGGCCTGCAAGCGCCCCGTGCTGGC
Protein Sequence: CYCPRETLRSVECAADSAGVLGFSCSQECARKLDCGQHDCQLPCHEGPCPGCPLVPARVTRCPCGQTLLTAEQARKSCLDPVPTCGKECLLPLSCGPDGSLHFCKSPCHHGACPPCPEKTQVSCRCGHITKNLLCTELEAQRNNVFCGKKCTKKQSCGRHRCKTLCCVDAEHRCPLPCTRTLSCGLHRCAATCHSGHCDPCWRTSFDELSCRCGAAVRYPPVECGARPPVCSQACSVMLPCGHPPLHTCHPATTPCPPCTVLTQLYCHGRHKMRKTIPCHQEDFSCGLPCGKDLPCKKHKCIEICHKGNCPSVCKQPCEGVRGSCGHACGAACGHEGPCPARAACKRPVL

Sequence clustering based on sequence similarity using MMseqs2