Gcon000159.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01002487.1:6980-11252[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 3e+02 3.4 5.3 1 23 152 174 152 174 0.97 2 13 0.035 4.3 9.3 1.6 2 23 181 203 180 203 0.95 3 13 0.00039 0.048 15.4 3.8 2 23 343 364 342 364 0.95 4 13 0.049 6 8.8 0.4 3 23 428 448 427 449 0.96 5 13 0.15 18 7.3 0.7 1 23 454 477 454 477 0.97 6 13 0.0009 0.11 14.3 2.7 1 23 481 503 481 503 0.99 7 13 0.096 12 7.9 0.0 2 23 632 653 631 653 0.95 8 13 0.25 30 6.6 4.6 3 23 662 682 660 682 0.95 9 13 0.05 6.2 8.8 2.3 1 23 688 710 688 710 0.96 10 13 3 3.7e+02 3.2 0.1 6 23 870 887 866 887 0.91 11 13 6e-05 0.0075 17.9 1.9 2 23 894 916 893 916 0.95 12 13 0.0028 0.35 12.7 0.3 3 23 979 999 978 999 0.97 13 13 0.0055 0.69 11.8 0.6 2 23 1006 1028 1005 1028 0.96
Sequence Information
- Coding Sequence
- ATGACGAGCCTTGCGGACGCCTCAGCGGAGAAAGTGGCCATGGCGCTGCGCTCCATCCGGCTGGTCGGCAAGTTCTTCTCTCTGTGGTCGGTGGAGCGCCCTGTGTTGGAGCACCTGGAGGGTGTGGAGGACTTCCTGGTGCGCAGCTACTGGAGCAGCGTGCGGCGCAAGCACAACATTGCGGACTGCACAGTCCAGTTGCTGCGGCTCAGTGACCTGGAAGTGGAAGATTTGCTGTGCAAGTTCAAAGGCACCGCGAGCTCGGAACCGGAAGACTCTAGTTATGTTTCCGGCGCCGTCTCGCCTCTCGACTCCGCTTGGAGAGCAGAAACGGTAGCCTCTCTCTCCTCTGCGAGTTCCCTGAACAAAATTAAGATCCGAAGGTGCGCGACCTCGTCCCGCATCGAGGGTGAGTTGAACTACACGAGAGCGTTAAAAGGAACGATCAAGATGTTTTATTGCCGCAGCTGCAGCTACGTCAGCAAACGTCACGACCGCATGAAGAAGCATCAAATGCTGCACTCTCTGAGCCGCCCGCTCGTCTGCCCGCAGTGCAGCTGTCGCTTCCTGACGGCCACGGAGCTGAGTCGCCACCTGCGCAACACGCACCTCAAGGGCCCGGGCCGCGTGGCCATCTCGCAGGATCAGCTGACGTGTATTCGCAACAGAGTTCTCGCAGAGGCTCGACGGCAGGCGGCGCGGCACCCGACCGTGCCGACAAGTCATCGCCCTTACTTCTGTGCGCTCTGCTCGTTCCGTACCGATCTCTTTAAGAAGCTGGAGCTCCATCAGCTGTGTCACGACCGGCGGCGACCGTTCGCTTGCGATCGCTGCGACTCCGAATACTACATCCAATCTCACTTAGACTGCCACCGTCGCGCGGAACATCCCGAAAAGCCCCCGAAAGCTGCGTCTCGGCCGGCCTCCAACTTCCTGCGCTGCCGAGTCGTCGGCTGCGACTTCTCCTCCTACAGAGCCCGGCTGGTGTCGCATCTGAAGATGCACACGAGTATCGACCGGCCCTTGAAGTGCAAGCGCTGCCCTTGCCGGTTCAAGAACAAGGGGAATCTCAGGACCCACCAAGAGGCGCACGAGAAACGAGATCGGCTGAAGAACGTCGCGGCTGGCAAGCTCAACCGGGCGCTCGGCCAGGTGCATACCCGGCCCGGGCAAATCCATGGCCAGGTGCCCGGCCAGGGACACCCCAGGCCCGGTCAGGTACATGGCCAAGTGCCCGGCCAGGGACACCCCAGGCTCGGTCAGGTGCCCGCCCAGCGGCTGTGTTCGGTCTGCAAGTACAAGGCGCCGTCCGCGTCTGGTCTGTTAAAGCACGCGAGAGTGCATCATCCGTCTCGGAAATTCACTTGCGATCGTTGCACGTACCGGATGCCGACCGAGAACGAACTGATCAACCACAAGCGGCGGGCGCACGGTGACCGGTACGAGTGCAGAGAGTGTCCGCTCAAGTTCACTCAGATGCGAATGTACAAGAGGCATAAGCGCATGCATCTGCTGAAGCTGGCTGCTGAAGAGCGGCCTGATGTTCGCGACGGAAGTTCCGATCCTAGCTGGATGGTGCAGATTCCTTCTGACCCTCGGCCGTCCGTGAACGTTCCCGACGTTTCTGCAGAGGTTTGCGTTCCGTCGCCGATTCCGGTAGTCGTTTCTCTATGGACCGATAAAAAAATCGATCGAgcggataataaaaaaataataccggTTCTGAGCGTCTCTCCGATGAGACAAGAACAGGCAAACGTAATAAACAAGAAGCACAAGGCGCCGTCGTCGCGGTTCATTCCGGACGGCGTCCACCGGTGCCAGCTGTGCGCCGTCACCTGCGACACCATCCAGACGTTCATCCTCCACTCGCTGAGCCACGGCCCCGCGCTGCGCTGCTCCTCCTGCCCGGCCGCGGCCGCCGACGCGCTGGCCTTGAAGCGCCACATGATGCGCCACTTCAAGCGCGCGCCCGTGCTGGCCTGCCACGAGTGCAAGGCTCGCTGCCGCAGCGCGCTGTGGCTGCGGCGCCATCTGTGCGGGCACCGGCGAGGCGCCAACTTCGCCTGCGAGGTCTGCGGCCATCGCTCGGTGAAATACCATTCTCTGCTGCGGCACGTGACGATGCACGACCCGGAGCAAATTTGGAACGGCAGCCACCTCCTACGTTTGGATCGTCTCTCCCGCAAGGCACCGGAGGAGCCCGGAGAGTCTCGTTACGAGCTCGAAGATAACGATCCCGCGGAAGAAAACTGTCTCCCGGAAGAGGCCTATCGAACCGTAGATATCGACGACGGCCCCGTGAAGTTGGAGCCCGAGGAAACGGAGGACGCCTCCGAATCGAAACGACTCAAAAGCTATCCCGTGATATCTGAAGTGTACTCGGTGGTCGCCGGCATCAAGAGAGAGCTCGAGGACAGTGAAAGTCTTCCGGGGACCGACGACTCGGATCAGAACTTTAGACCGCTCCGAGATCTCTCGGTCGAGTTTGAAAACGAGAAAGAGGCAGCGGAAGTATTGCGTTGCGCGGAATGTTGCTTCGCATCCCCCTCGACCGTGCGGATGGCGCAGCACGACGCCTGGCACGCGGGCGGCTGCCCCTCTCCCTGCGACGTGTGCGGCAGCCGGGCCGCGGGCATGGCCCGGCACCTCAAGATGCACTCCAAGCTGAGGCCCCTCAAGTGCAAGGACTGCTTCTACAAGTTCGTCAACCGCAGCTCTCTCACCCGACACTGGAAGTACGCGCACGAGGTTCCCAATAAAGTGACATCCGACGATCCGGTCCTTGCTAGAGAATCTTCTGATTCGACCGATCGCCAGAACGACGTGAGCGACTTTGCGCCGGAAGACGAGGACTCGCTCCTGAGGGTGCGGGTGATGCCCCCCGGAGACGCCTCGCCCCGGCCCCGGCGCCGGCAGCAGAAGAAGAGAGACTGTGACGTGTGCGGGTTCATCGCCAGCTCCCACTATTCCCTCAACAGGCACATGGCCGTCCACGATCAAAGCCGTCCGATTCGCTGCCATCTCTGTCCCTACAACTTTTTCTCCGAGGCGTTGGCCACcagacacatgcgggaggctcACGGTGAACCCCACTCGGCCGTTCTAGAGACGTCCGCGGTTCCGGAGAATGCGAGATATTTAGAGCCGAATACCGGAGAACGCAGAACTACTGAAAGAACCTCAGAATACCTGGCATTCGACCGAATAAGTTGCGAAGCAGTAGACGGCGTGAGAAAAGAAGACTCGCATAAATTTAACGTCACAACAGATCATCCGAAAGAGATATACAGAGATGCGCTACGAAACTACCTGATGGATGGAGTGATGGCCGCGGAACATCACAAGGCCGGAGGTGACCCGAAGATTGAAATGTCAATGAATTGTATCGATGTCGATGACCCCGTCTCTTTGGAAGGGGAGGAGAGTGAATTCATCGACTACAGTCTGTGCGAGGTAAAGGGCTCGGAGGCTTACAAGATGCCGGCCGACTGTGACGATGCGGAGTACGCCAAGCCACACCCCATCTACTCGCGAGAGATAGATCGCGACGAGAGTTCAAAGACCTCATTGTGCAACGACGAAAAGTCTAACGATGATCGGCTGAACTGTTTTTGTGAAACCGAAGCCATCAATGTCGCCGTTACGGAAACGACATCGTAa
- Protein Sequence
- MTSLADASAEKVAMALRSIRLVGKFFSLWSVERPVLEHLEGVEDFLVRSYWSSVRRKHNIADCTVQLLRLSDLEVEDLLCKFKGTASSEPEDSSYVSGAVSPLDSAWRAETVASLSSASSLNKIKIRRCATSSRIEGELNYTRALKGTIKMFYCRSCSYVSKRHDRMKKHQMLHSLSRPLVCPQCSCRFLTATELSRHLRNTHLKGPGRVAISQDQLTCIRNRVLAEARRQAARHPTVPTSHRPYFCALCSFRTDLFKKLELHQLCHDRRRPFACDRCDSEYYIQSHLDCHRRAEHPEKPPKAASRPASNFLRCRVVGCDFSSYRARLVSHLKMHTSIDRPLKCKRCPCRFKNKGNLRTHQEAHEKRDRLKNVAAGKLNRALGQVHTRPGQIHGQVPGQGHPRPGQVHGQVPGQGHPRLGQVPAQRLCSVCKYKAPSASGLLKHARVHHPSRKFTCDRCTYRMPTENELINHKRRAHGDRYECRECPLKFTQMRMYKRHKRMHLLKLAAEERPDVRDGSSDPSWMVQIPSDPRPSVNVPDVSAEVCVPSPIPVVVSLWTDKKIDRADNKKIIPVLSVSPMRQEQANVINKKHKAPSSRFIPDGVHRCQLCAVTCDTIQTFILHSLSHGPALRCSSCPAAAADALALKRHMMRHFKRAPVLACHECKARCRSALWLRRHLCGHRRGANFACEVCGHRSVKYHSLLRHVTMHDPEQIWNGSHLLRLDRLSRKAPEEPGESRYELEDNDPAEENCLPEEAYRTVDIDDGPVKLEPEETEDASESKRLKSYPVISEVYSVVAGIKRELEDSESLPGTDDSDQNFRPLRDLSVEFENEKEAAEVLRCAECCFASPSTVRMAQHDAWHAGGCPSPCDVCGSRAAGMARHLKMHSKLRPLKCKDCFYKFVNRSSLTRHWKYAHEVPNKVTSDDPVLARESSDSTDRQNDVSDFAPEDEDSLLRVRVMPPGDASPRPRRRQQKKRDCDVCGFIASSHYSLNRHMAVHDQSRPIRCHLCPYNFFSEALATRHMREAHGEPHSAVLETSAVPENARYLEPNTGERRTTERTSEYLAFDRISCEAVDGVRKEDSHKFNVTTDHPKEIYRDALRNYLMDGVMAAEHHKAGGDPKIEMSMNCIDVDDPVSLEGEESEFIDYSLCEVKGSEAYKMPADCDDAEYAKPHPIYSREIDRDESSKTSLCNDEKSNDDRLNCFCETEAINVAVTETTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -