Basic Information

Insect: Glossosoma conforme
Gene Symbol: pacc-1
Assembly: GCA_003347265.1
Location: PZYU01016799.1:12357-17026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0015 0.19 13.5 0.5 1 23 78 102 78 102 0.96

2 8 0.89 1.1e+02 4.8 0.0 1 23 118 142 118 142 0.94

3 8 0.98 1.2e+02 4.7 1.0 3 21 183 203 182 205 0.88

4 8 0.06 7.4 8.5 0.7 2 23 218 241 217 241 0.94

5 8 0.087 11 8.0 1.7 3 19 249 265 248 266 0.97

6 8 6.5e-05 0.0081 17.8 0.7 1 23 277 299 277 299 0.99

7 8 0.00018 0.022 16.4 0.1 1 23 303 326 303 326 0.97

8 8 0.0001 0.012 17.3 2.2 1 23 332 354 332 354 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0015	0.19	13.5	0.5	1	23	78	102	78	102	0.96
2	8	0.89	1.1e+02	4.8	0.0	1	23	118	142	118	142	0.94
3	8	0.98	1.2e+02	4.7	1.0	3	21	183	203	182	205	0.88
4	8	0.06	7.4	8.5	0.7	2	23	218	241	217	241	0.94
5	8	0.087	11	8.0	1.7	3	19	249	265	248	266	0.97
6	8	6.5e-05	0.0081	17.8	0.7	1	23	277	299	277	299	0.99
7	8	0.00018	0.022	16.4	0.1	1	23	303	326	303	326	0.97
8	8	0.0001	0.012	17.3	2.2	1	23	332	354	332	354	0.99

Sequence Information

Coding Sequence: ATGGCCACCTCCAAGACGCAGCGCGGCACGAGAGCTTCACGCTGCCGCAGCTGGGTACAGCAACAGAACGAGATCCCTGGCGAGCTGAGGGAAAAGCCCGCGGGGGGCGCCCGCGGGGACTCCCTGGGCAGGCGTCGCGCCGCAGACGCCTCGGAAGGTGATTCAGACACCTCCCGCGCGCCTCCCAAGAAGAGAGTTTTCCGGGAGCTCATCTCGGCGCAGCTAATACTGCATGAGTGCGAGTGGCTCGGCTGCCAGGAATCTTACGAGGACTACGGCCAGTACCAGCGCCACGTGCGCTCGCACATGCCTGAGCTCCTCGTCAAGCCAATCGACGGCGGTGCATCCGTTTACGTGTGCCTGTGGGACATTTGCGGCTTTGAGACGGGAGACCGCGGAGAGGTGATGCGCCACGTGAACTTCCACGCGTACCACACGCGCATCAAGGCCATCGGGCGCAACGTCAGGGAGCGCCTCAGCCTGCAGCGCTGCTGCTGCGACTCCACCAAGCGCAACCGACTGCCGGCGCAGCCCGAGGACTCGCTGTGCCGCTGGGCCGACTGCGAGCTCACCTTCAACAGCGCCCAGGATTTTTTTGACCACGTGCGCTGCCACGTGCTAGGTGCCGCGACTAATGCTGGCGGGCAACTGGTGTGCTCGTGGCTCGGCTGCCGCCAGAGCAGCTGCACGTCCACCCAGCTGGGCGCGCACGTGCGGCGCCACACGGGTGAGCGCCTGGTCGCCTGCTACCACTGCGGGGGCGCCTTCTCCACCAACGGCAAGCTGCGGGACCACTGCGAGAGGCAGGTGCCATCTGTAGAGCAGGAGTACCAGTGTCCCACGTGTAGCCGGCTCTTCCCCACTTCACGGCTGCTGCGCGACCACGCGCGCCGTCACGTCATGGCCTACGAGTGCTCGTCCTGCGGCCTGACCTCGCCCACGCCCTCCGCCCTGGCGCAGCACATTCGCTATCGGCACCTTCACTACCGGCCCTTCAAGTGCCCCCACTGTCCCTACGCTGCCGTCAGTAACCACGACCTGCGCACCCACCAGATGCGGCACGAGGGCCCGGTGCCGCGCACTTACCCGCGCCGCGTGTACGCCTGCCACTGCTGCAGTGCGCTGCTGGGCGCCGGCGCCTCGCTCAGCCGCCACCTGCTGCGCGTGCACGGCTACAGCCTGCCCAAGGGATTCTCCCGACTCAGATATGAGGAGTCCGCTGACGGAATGTACCGGCTCATGGATGTCCGTTATGAGACAGCGGCGCTGTCCAACAGGGAGCCCCTGGCCGCCCCCGCCAGCCCCGGGGACGGAGGCGACTTCACGGTGCTGCAGAGTTCCCCCGGCTCACTGCTCTACCCGGCCAGCTTCTGCGTCGTGCCGGCCGCCGAGGACAAGCGAGCGCTGCACGCCCCGCTGGAGGAGCCTCAACAGGATACCTCAGATTGCAAGTCCACCACAAATATTAAACCTAGAAGACTCACCCGGAGAAACCGTCGCCGAGCAGCCGTGCCCCGACATTCAGAATCCTTAGACCCAGAAGACGAGCCGTACACGCAGGACGTGCAGGACGACAAAGACGATAAAGACGACCGAGACTACCCGGTCCACAGTGCAGGGAAAGCGGTTAAGGAAGAGGAGTGGTCAGTGGCCCCGCGTCGCAAGACGATTGATGAGTTTTCCTGCATGCGGAGGTTTGGGCGTCGACCGCCCTCACCCGTGCAGAGCATCGAGATATCTATCGAGGAGGTGGACCTCCTCGGGAACGTTATAAAGACAGAAGTAGTCGAGTCGCAACCTCTTATTGTctga
Protein Sequence: MATSKTQRGTRASRCRSWVQQQNEIPGELREKPAGGARGDSLGRRRAADASEGDSDTSRAPPKKRVFRELISAQLILHECEWLGCQESYEDYGQYQRHVRSHMPELLVKPIDGGASVYVCLWDICGFETGDRGEVMRHVNFHAYHTRIKAIGRNVRERLSLQRCCCDSTKRNRLPAQPEDSLCRWADCELTFNSAQDFFDHVRCHVLGAATNAGGQLVCSWLGCRQSSCTSTQLGAHVRRHTGERLVACYHCGGAFSTNGKLRDHCERQVPSVEQEYQCPTCSRLFPTSRLLRDHARRHVMAYECSSCGLTSPTPSALAQHIRYRHLHYRPFKCPHCPYAAVSNHDLRTHQMRHEGPVPRTYPRRVYACHCCSALLGAGASLSRHLLRVHGYSLPKGFSRLRYEESADGMYRLMDVRYETAALSNREPLAAPASPGDGGDFTVLQSSPGSLLYPASFCVVPAAEDKRALHAPLEEPQQDTSDCKSTTNIKPRRLTRRNRRRAAVPRHSESLDPEDEPYTQDVQDDKDDKDDRDYPVHSAGKAVKEEEWSVAPRRKTIDEFSCMRRFGRRPPSPVQSIEISIEEVDLLGNVIKTEVVESQPLIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -