Gcon042747.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- PLAGL2
- Assembly
- GCA_003347265.1
- Location
- PZYU01021369.1:1-4285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.23 29 6.7 0.2 2 19 883 900 882 901 0.84 2 10 0.0021 0.25 13.1 7.8 1 23 921 943 921 943 0.97 3 10 0.00015 0.019 16.7 1.9 1 23 985 1008 985 1008 0.92 4 10 0.013 1.7 10.5 4.6 1 23 1024 1046 1024 1046 0.95 5 10 0.00024 0.029 16.1 1.0 1 23 1052 1074 1052 1074 0.95 6 10 3e-05 0.0037 18.9 3.1 1 23 1080 1102 1080 1102 0.98 7 10 5 6.3e+02 2.5 2.2 1 23 1109 1133 1109 1133 0.95 8 10 0.008 0.99 11.3 0.1 2 23 1141 1162 1140 1162 0.97 9 10 0.013 1.7 10.6 2.3 1 23 1176 1198 1176 1198 0.93 10 10 0.00069 0.085 14.6 2.2 1 23 1204 1227 1204 1227 0.94
Sequence Information
- Coding Sequence
- AAGGCCCGCGTGTCGGCGCCCCCGCCCCGCAAGAGCGCCGCTGACGACCAGCCGAGCTGCCGAGCTCAGCGAAACGCGGACCGATCCTCGCCACCGCGGCAACTCAAGCCTCCCCTCAGGACCGTCAAACACGCGCCGGACGATCCGCAAACGACTGCACAAGACGGCGAAGACAAACAACGCTCTGTGAAACACGCCAAACAAGATACGTCGACCGATCTTTCATCACAAACGCAGCACGCCAAATTTCATTCcgcattaaaatttaaagcgCAAACGTCCACAAGTGAACAcgttaaaaacatacatacaaatttaaataatcctaAAGCAGAAAAAGACAGCGATGTCTGTTCTACATCGCATCATAAAAGCAAATACAAAACGAAAGATGAAACGAGTGACGAAGCTCGCAAAATCGACGCATCTTCTTGCTCGTCTTCTCAGCTCGTCAGGCATGCGCTCAGGACCACCAGGCAGCTTCCTGATAAGCCGTTGTCATCCAGTGAAGAATGTGATGACAGACGTTGCTCGAAGGATGTGAAAATAGTCAAAGAGACAGAATCGTCGTCGCAGCACGTTAAAGCTGCTTCGAAAACAAAAGACAAACAAATTATTAGTGAAGAATATTGTTTGAAAGACGCTAAAGAGGTCGATCCGTTGTCATTGCCGACTCAGTTTGTTAAAAGTAATTTGAGAAACGCAGGAAGAGTTTCCGGCACGTGCGGCGTCGAGAAACATTCTTCGACTGACGTTAAGCCGTTTAAAGACATCGAACCTGCGTTGTCAGCTCGTCACGTTAAAGCAGCTTTAATAGCTGCCAAACGGCATAATTCTAGCGACGAATGCGATGAAAAATGTCATAGTAAAAATGTCGGTTTAAGCAAAGTCGCTCGTGCGTCATCTCACCGACTCAGAAGTCCTttgagaaaaagaaacaatcCGCACGCGTCAACGTCGAGTGACGAGAGCGATGTCAAACATTGCAAGTGTGTAAAAGTAGGCAATCCTTCGACATCTTCGTCTGTAAAAAATTCAACACAGTTATCTGATCGTCTGCGGACGTCTAGTGAAGACAGCGACACGAAAAGTTGCTTTAAAGTTGTTAAAACGAGCAGAGACATCGTGTGTATCTCGGCGTCTCGGAAAATTAATGTCGCTTCGAGAAAAAGAGGAAATCCTCACACGTCTAGTGATGAATGTGATACTAAACAACACACGCACACGAAAGGCAATCCCAGCACGGAGAAAGTGGTTACTCGAGTGCATGCAGAGATTGTTGCTGCAGCATTATCGCAAGTTCAGTCAGCCTGGAGTGCTGCGAGGCTCTCCAATAAACCACAGTCTTCTAGCGATGAAAGCGACCCACTGCAACTGTTGCGAGTCACAGAGCCAATTGAGAATATTATCCTATCTTCTGAGAGAGTACCTGTTCAACATATTTCATCGAGCGACGAATTCGATACAAAATTAACATCGAAAGACGTAAAATCATCTACTAAAGAGCTTTCAGAAGAGATTAAAGCTTCAAGACCGCTAAAACGTGTGTCTAATCAGCCGCAAACTTCCAGCGATGAATATGATTCAAAGCGATTCGCCCCGCAAGAAAAAGATGACAAAACGATCAGTGATTCGGACCCGCTTGACGTATCGGCGGTCACAAAAACCACGACAACGACGGCGAGACAGATTACTAAGAGAATAAAAGAAATTACTCGTCGTTTCGGTGAAGCGTCGGAAACTAGGCCTTCGCTGCGCCCCTTCAGGCAAACTTCTTACCGAGAGTTTGACAGTAAACGATCGACAAGAGATATTAAAGATGctcaaaatatttcttcaaacaCTCTAAAGACGCTTAAAAGTGTTAAGATCGAACGTCAAATTTCTAGTGACGATTCCGATGCTAAACGTAAAGTCACGTCCGGCTCGAGCGACCCGTCTGACACGGAGCGGCCGCTAAAAAAATCCAAAGCCGTGTTACAGCCTCCGGAACGATCATCCGGGCGAGTCGATAAGAAAAGATTGTCGAAAAATGCTAAAGCTGCTCTTGCAAAGCTGACCAAAGATCTCGTCCACCCTTGGAGTGAAGATTTTGatcgaaaacatattttaagagaTCAGACGATTGCCGTGCGGGTCTCTCGACGGATTCCGAACCCGCGTAATTCATCCGGTGATGAATTCGATCCGAAACGAGAAGAATCTGTGAAGGTTCGACCCGTTTCTAGTGATTCTTCGGATTCGGATCATGCGTCGAAAGACGTCTCCCCGGGAGTACTCAGTTCTAGTGACGAACTTAACGTTCAGCTATTGAAAGAAAGGCCGTCTCGACGCACGCCTCGACTGGGAAAACGTCCCAATACTTCGAGTGATGAATCAGATACTAAGTTATCGTTGAAAGATGCCAAGATCGGTTTGCGAGAAAGTAAAGCAGTCCTCGTTCGAGCTTCTAGTGATTCTCTTGGGGAAGCTAAAAGGCGGAAAAAAAATCATCCGACACAAGAAAACCCATCGGATAATATTTTACCAAAAGACGCTCGAAAAATTTGCGATAagacatttgataaaaaaattgtcgaACACGCCGTCTTGCACGGAGAAGAAATTCTTGGAAACAATCCTAAAGAGTCGGACGGGAAAAGGCTGTCGTGCAAGGAATGCGGAAAGAAGTTTTTAAATGCTGAAAGATTAGCTCAGCATTCTCCGTGTTGCTCTTCAGAGGCGGCGTCGACTGAGAATAATCCGCAAGACGGCAAGAAACACTGCTGCAAAGAGTGCGGCAAGAAATTCTGCAGTACCGGCAAATTGAGTCAACACATTTTGACGCACGGTCCCGTGGAATCGGATCCGGAAAGTAAAAAGTCGTGCAAAGAAAGTGGGAAGAGATTAACAAACGTCGGTAAGCTTTCCGTTAACGTAACGGAGCAAAGCGGAAATGATTCTGAAAAGAAACACTTTTGTAACGAATGCGGGAAGAAATTCTGTAACGCGGCGAAACTTGCGCAGCACATTATCGCGTCGCACGGAAAAGCAACTTTAAATGATCCGCCGATCGCTGATAACAAACGTCATTGCTGTGGAGAATGCAGCAAAAGATTCTGCAGTCCCGGTAAGCTGGCGCAGCACGCCCTCTCACACACCGGAGAGTTGCCTTTTGCTTGCACATTATGCGATAAACGtttcaattcaaaatttaaactcGTTCGCCACGGTCTAATCCACAGCAAGACACGACAATTTCAGTGTCCGCTGTGCGAAAGAACGTTCCATCGTAAAGATCATCTTGCAAACCACGGAAGAGTCCACGATCCGCTAAAAAAGATCTACACTTGCACGAGAGAGTCTTGCCGTAAACAATACACATCAGATTTGAGCTACAGGAAACATCGAGCACTTCATTCGGCCGAAGAAGGCAATCTTAAATGCGAAATCTGTTCTGAGACGTTTGAAAAGCAGGCCGATATTGTATACCATTTAAAGGTTCACGCTGGCAGTCGCTCTGTCAAGAACGAAAATGATAAAAAGTTCACTTGCCCTGATTGCCACAGGAAATTCTTCACTGGCAAAGATGTTCGCAGACACTCGGTCGTGCATTCTAAGAGACGAGACTTTCTCTGCCAGTTTTGTCCGCAAAAATTTGGCAGAAAAGATCATCTCGTTCGCCACGTCAAAAAAGCGCATCCCGACAGTCCGTGGCAGAGTTCGGCACCGGGAACGTCCACAGAAAACATTTCGGAACCCGTTAAGAAAGTTAAAAGCGATGTTAAAAAAGCGAAAACGAAAGCAGAGCTTAAATTCCCGAAAAAGCCGCCGGATCCGCCGCCGCGTTCCGAGCGACTCAAGAATCTTGAACGTTACAAGTTTGGCTACGCGTCACAATCCGAGTCGGATTATCTCGGGACTGCGGATATTGTTTATGAAGAGCGGCAAGATAACGTCAAACCGGAACCTGAAAATAAGGCAACGTATTCCGGAGCgaaagataatattaaatatcccGAATATGGGTCGGAGATGCTTTTTATGATGGATTTAGAAAGCTTTCCTGAGATTCCTCCTGCGCTGACTGAGATGGAGTTTATTCAGCCCGGGGAAGAGATTCTGCTGGATCCTGGAGCTATGCTGTTGAGCGAGACGTCGGGAGCGGAAAGCTGGGCGATGCACAGGTTAGAGAATGTTCCCGAGATGGCCGACAAGCAGCCGGGCGTGGTCCCCCTGCCGGCGTTCAAACAGACCTTCCAGAACACGGCTCCGAGTCCCAAACCTCCACAGCCTCCAAAGTAA
- Protein Sequence
- KARVSAPPPRKSAADDQPSCRAQRNADRSSPPRQLKPPLRTVKHAPDDPQTTAQDGEDKQRSVKHAKQDTSTDLSSQTQHAKFHSALKFKAQTSTSEHVKNIHTNLNNPKAEKDSDVCSTSHHKSKYKTKDETSDEARKIDASSCSSSQLVRHALRTTRQLPDKPLSSSEECDDRRCSKDVKIVKETESSSQHVKAASKTKDKQIISEEYCLKDAKEVDPLSLPTQFVKSNLRNAGRVSGTCGVEKHSSTDVKPFKDIEPALSARHVKAALIAAKRHNSSDECDEKCHSKNVGLSKVARASSHRLRSPLRKRNNPHASTSSDESDVKHCKCVKVGNPSTSSSVKNSTQLSDRLRTSSEDSDTKSCFKVVKTSRDIVCISASRKINVASRKRGNPHTSSDECDTKQHTHTKGNPSTEKVVTRVHAEIVAAALSQVQSAWSAARLSNKPQSSSDESDPLQLLRVTEPIENIILSSERVPVQHISSSDEFDTKLTSKDVKSSTKELSEEIKASRPLKRVSNQPQTSSDEYDSKRFAPQEKDDKTISDSDPLDVSAVTKTTTTTARQITKRIKEITRRFGEASETRPSLRPFRQTSYREFDSKRSTRDIKDAQNISSNTLKTLKSVKIERQISSDDSDAKRKVTSGSSDPSDTERPLKKSKAVLQPPERSSGRVDKKRLSKNAKAALAKLTKDLVHPWSEDFDRKHILRDQTIAVRVSRRIPNPRNSSGDEFDPKREESVKVRPVSSDSSDSDHASKDVSPGVLSSSDELNVQLLKERPSRRTPRLGKRPNTSSDESDTKLSLKDAKIGLRESKAVLVRASSDSLGEAKRRKKNHPTQENPSDNILPKDARKICDKTFDKKIVEHAVLHGEEILGNNPKESDGKRLSCKECGKKFLNAERLAQHSPCCSSEAASTENNPQDGKKHCCKECGKKFCSTGKLSQHILTHGPVESDPESKKSCKESGKRLTNVGKLSVNVTEQSGNDSEKKHFCNECGKKFCNAAKLAQHIIASHGKATLNDPPIADNKRHCCGECSKRFCSPGKLAQHALSHTGELPFACTLCDKRFNSKFKLVRHGLIHSKTRQFQCPLCERTFHRKDHLANHGRVHDPLKKIYTCTRESCRKQYTSDLSYRKHRALHSAEEGNLKCEICSETFEKQADIVYHLKVHAGSRSVKNENDKKFTCPDCHRKFFTGKDVRRHSVVHSKRRDFLCQFCPQKFGRKDHLVRHVKKAHPDSPWQSSAPGTSTENISEPVKKVKSDVKKAKTKAELKFPKKPPDPPPRSERLKNLERYKFGYASQSESDYLGTADIVYEERQDNVKPEPENKATYSGAKDNIKYPEYGSEMLFMMDLESFPEIPPALTEMEFIQPGEEILLDPGAMLLSETSGAESWAMHRLENVPEMADKQPGVVPLPAFKQTFQNTAPSPKPPQPPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -