Gcon023494.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01114376.1:9353-32439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.089 11 8.0 3.7 1 21 736 756 736 757 0.95 2 15 0.95 1.2e+02 4.7 1.8 1 21 768 788 768 791 0.83 3 15 8.9 1.1e+03 1.7 0.4 2 23 798 821 797 821 0.84 4 15 0.00055 0.068 14.9 0.1 1 23 827 851 827 851 0.93 5 15 0.086 11 8.0 0.9 1 23 857 879 857 879 0.94 6 15 0.15 19 7.2 6.3 1 23 885 907 885 908 0.96 7 15 0.049 6.1 8.8 0.0 2 21 918 937 917 938 0.92 8 15 0.13 16 7.4 3.1 1 20 982 1001 982 1004 0.95 9 15 3.4 4.2e+02 3.0 7.3 1 23 1011 1033 1011 1033 0.96 10 15 0.004 0.5 12.2 1.0 2 23 1090 1112 1089 1112 0.94 11 15 3.7e-05 0.0046 18.6 0.4 1 23 1122 1144 1122 1144 0.97 12 15 4e-05 0.005 18.5 0.5 1 23 1153 1176 1153 1176 0.97 13 15 8.7e-05 0.011 17.4 3.2 1 23 1182 1204 1182 1204 0.98 14 15 0.00051 0.064 15.0 1.2 1 23 1210 1232 1210 1232 0.98 15 15 8.6e-06 0.0011 20.6 0.6 1 23 1238 1260 1238 1260 0.98
Sequence Information
- Coding Sequence
- ATGTCTTTCATGTTGTGCTTGGAAGACTCAGCGGGAGAAGATAAGACCATAGAGATAGACCCGTCTGATACATTTGCAACGTTTACAGAAAAAGCTagtaCTATTTTAGGTTATGAGCTGCAGCTGTCAAATCTAGTACAGGGCGAAGAAGTCACGCTCGCCGACAACATGTACGACTTTTACAATAAGAGAAACGTGGAAGAAGCCCCAAAAGAACCCGCCGCGGTGCCCATCCAAGAGCAAGACAAGACACAAGCAGAAGATCAACACATCTCCGAAGAAAGAGGAGAGGTTGCTTACGTTTTAGAGGACGGAACACAAATATATACTTCGCAGCTTGTAAATGACGTAAACGTCAATTTGGACGTGAAAAACATTgataatgtttcttttataGTGCTCGGTAATGACGCAAAAGAAGGTAATGCCTCTATGCAACTTTTAAATGAAAGTAACGTCAATTGGAACGATGGTGTGAAGTTTGTTGACGATGGTTATAACATTGTATTCGGTGAAAGCGTTGAGCACATAGAAGTTGTCGGTAAGCAAAATTGTGATAATTTCGATGATTCTAATAATGTTCAAGGGGATAACGGCTTTGAATTGTTAGATCACGTTGAACAGAGCGacaatttgatgaaaaataatgattttatagtTGATAATGATCAAAATACTATTGTTTTGAACGCTGTAGAAGCTAATCATGATGATTTGTTTAATGGCGTTCAAAAAGATGGCAGTTTTGATGTGAAAAACGTAGTTTTAGACGCAAATGTTGCTGTCGATAGTGTAAATGTTTGTACTGTCGATAAAGCATCTGAAAAAATGTCTATTATGAATGATTGTTTAAGCGAAAACAAACAGAATGCTTTGAAAATCATCGAAATAAGAAATCGAATACCGAAGTTGATGGGCGTCGGCAAAAAGAATCACAGCAAAGTCGGTATTTTACGTAAGATACTACGGAATAAAGAAAAGCTGTTACAAGAAGAGGAAGAATTGGGGACGATACGCTTGGAAGGCATGTTGAAATGCCACGACGTGACAGAAGAgcaaaagatttttaatgagAATTATATCAACGTCTTGAGCGATTTCGAAAAGGATTTTCCGCGCTCGCTGTGCGTAGTTTGCGACGCCACTTTGAACAGCTGCGAAGAGAGGTATTACATGTTTAACGGAGACAACGTGAAAAGAATGCTGGAGAGTGTCGTCGTCAAACGGGATGATTTGCTTTCAAAAATCGTTTGTGAAACTTGCTTATTTAAGGATTACATCAAAACAAAGATCGTTAGTAAGATTCTCAATCCTGATACGTATTTAGTCGTGTACAAGCAGCATCAGATGATatttaagaagaagaatattctaAGTCGTGTGCCTGAAGACATTCCGTTAAAAAAAGATGAGATTTTCGTTAGAAAGTACGGGAATAAGAACAAAATGAAAGTGGTGAATGGCAACGATGGGGTGAAGGCTTTTTCTGACAGAAACAAATGGCAAAGGCAGTCGGTGCTCGGTGGGAATAACGAAGAAACAAGTGAGCGGTGGCTTGACGAGGATTCGGGATTCGTTATCAGCAGTCCTAGAAAAATCAATTTGCAAGACGACACCAAATCAGATGCTGTTAGACGCCTATCGGATTCGGATTCAGATAACGGTGTGTGGATTCTGCAAGCCGGGGATTCAAAGACAGAGAGACCATTCGAGCAGTCGACTATCCAGGCGTGGCTCAAGGAAGAAAGCAGGAGAAAGCTGACCACGGAGTATCTGAATAAAGACTTCATAAAAACGAAACAAAGCAGCGTTACATTGGCAACAAAAGATGATTCCATTATATGCAAAGAGGCTATAAGCGCCTTGAATAAAGTGATGTTGAGCGATAGTGTCGTTAATAAAGAATCCTTTGATAAAAGTAAACTTTTGAGTGCTGTAAACTCATTGGGAATGcttaagaaatgttttaatgtcaataataatgatTCTGGTAATTGCAGTACTGTTAAAGATGTCTTTGAAGTAAATAACAGTCCCGCTGTTTGGTTAAAGAACGAAGTAGGAGACAATTCTATTGCTTCGTGGTTGGAGGGGGAAATTTCTTTTGCCGATGGAGACCTGGAGGCAAACTGGAAGGAAGTGCAAGGAAATGGaaaagaaactgaaaaaatgaCTATAGCCAAGTTTCCATTGGGGCCGAGAGCTTTCCAGTGCGACGCTTGCAGAAAGAGATACAGCAGCGCAGACAGACTGCAGAAGCACCACTGTAACGGTGGCGCCCCCAGCGGTCCCGCGGGAGACTACAGCTGCCCGCTCTGTCCCGCTACCTTCCACACCAAagtgagactgcagtttcacaaCCGATTCTTGCACGCGGGACCTCAGAGCCTGCGCTGCTCGCTGTGTCCAAAACTGGCGTTCCCAACAGAGTCCGCCCTCTACGATCACGTGCACTTCTCTCACAACACGAGCAGGGAGTATCCCTGCCTCGAACCGGGATGCGGGAAGGCGTTCAAACTCAAAGCCGCGCTGACGACGCACTCGCGCAGCCACGCCAACGAGCGCAGCCACCGCTGTGAGGTGTGCGGCAAGCAGTTCCTGGACAGGCAGACGCTCGGCGAGCACAGCATCACCCACCTGGAGGTGAAGCCGTTCCAATGCCACGTATGCATGAAGTTCTTGAACCGCCGCTCCCGCCTGAAGATGCACTTGCTGACCCATCATTCTGAGCCTGCTTGTGGCAAGGTCATCTCTTGCAAGGGGTGCGACGAGGGGTTCAAGGATGCTAAAACTGCAATGAACCATCTGAACGAGTTTGGTCAATGTCCTGACACTAGAGATGTGGAGTACCTGCAAGAAGAGGCTCCAGAAGACAGCCAGGTGGTGGACGGGGTGGGCGAGTGGGCGGTGAAGAGCATTCAGACCAGGGAAGTGGACCAGGTGTACAGGTGCGAGTTCTGCGAAAGAGTTTACTGTGTGGCAGACTCGTTGAACTTGCACCGAGCTTGCCACGCAGACAACGACAACCCCTACACCTGCCATGTGTGTTCTGCCACATTCTCTTCATATTCAAGGTGCACAACCCATAAAACTACTCACGGCTATTTTAGAGGACAAAACGGATCGAAACCAGTCCCCCAAGAAGCGTTCCCAGTTGTTAAACACTTCTTttgggGTATCGCATATCACAGAAAAAAGGTTCACAGTCAAAAGAATGGAGCAACGGGGCCTGAAGACGAACTGAAGCAGCAGGAAAAGGTCACAGTTTCGTGTGCCGATTGCGATTTTACTACCAAGAACAAGGGGCATTTGCTTGTTCATAGAAAACTGGAACATTCTGGAAACAGTACTAAACAAGCTCTCTTTGCTTGTGAACAATGCGGAAAGAAATACATCACCAAGGTTGGCCTCAAGGGACATATGAAAAGTCACCAGGATCCAGAGTCAGCTGGTTCCCACACCTGCGAGATTTGCGGCAAAAACTTTGCCCACGCAGCTGGACTCATTACACACGGAAGGCGCGTGCACTTGAAGGAGACCCGCTTCTCGTGCAGCATGTGCGACAAGGCCTTCTACAGCTCGTGCGACCTGCGCAGTCACGCGCGCCGCCACACGGGGGAGAGGCCATTCCGCTGCTCCGTGTGCGGGCACGCCTTCCGCACCAAGGGCATGCGCAACGAGCACGCCAGAGTTCACACTGGGGAGCGTCCATTTCCTTGTGACATTTGCGGCCTCACCTTCAGACGCTCTTACGCCATGAAGAGCCATCGCCTCACGCACGCAGTGCAGCGCAACAAGACAGAAAATTCCACCGTCGTCCTCCTGCCCGCCGAAGACGACTCGACCGCAGAACAGTCTACCGCCGTCGACATTGTGATATACGACGAGAGCGGCGAACCGTCGTCATCTGCATATGTCGACATTGTCGACGAGGGAGACATCGGCTCTGCGGGCGTCGACTTTGTCATACAGGACGACGTCGTGTTCTTAGACACAGAAGATATGGCATCTGATAGAGACGAGCAGCAGCCAGATGTAGagGAACAAAAGGAGCATTCTAAATCACCTGACGATGGCAGCAGATTTGAAGAGCTGTTTCTAACAGTCCCAGACGATTAA
- Protein Sequence
- MSFMLCLEDSAGEDKTIEIDPSDTFATFTEKASTILGYELQLSNLVQGEEVTLADNMYDFYNKRNVEEAPKEPAAVPIQEQDKTQAEDQHISEERGEVAYVLEDGTQIYTSQLVNDVNVNLDVKNIDNVSFIVLGNDAKEGNASMQLLNESNVNWNDGVKFVDDGYNIVFGESVEHIEVVGKQNCDNFDDSNNVQGDNGFELLDHVEQSDNLMKNNDFIVDNDQNTIVLNAVEANHDDLFNGVQKDGSFDVKNVVLDANVAVDSVNVCTVDKASEKMSIMNDCLSENKQNALKIIEIRNRIPKLMGVGKKNHSKVGILRKILRNKEKLLQEEEELGTIRLEGMLKCHDVTEEQKIFNENYINVLSDFEKDFPRSLCVVCDATLNSCEERYYMFNGDNVKRMLESVVVKRDDLLSKIVCETCLFKDYIKTKIVSKILNPDTYLVVYKQHQMIFKKKNILSRVPEDIPLKKDEIFVRKYGNKNKMKVVNGNDGVKAFSDRNKWQRQSVLGGNNEETSERWLDEDSGFVISSPRKINLQDDTKSDAVRRLSDSDSDNGVWILQAGDSKTERPFEQSTIQAWLKEESRRKLTTEYLNKDFIKTKQSSVTLATKDDSIICKEAISALNKVMLSDSVVNKESFDKSKLLSAVNSLGMLKKCFNVNNNDSGNCSTVKDVFEVNNSPAVWLKNEVGDNSIASWLEGEISFADGDLEANWKEVQGNGKETEKMTIAKFPLGPRAFQCDACRKRYSSADRLQKHHCNGGAPSGPAGDYSCPLCPATFHTKVRLQFHNRFLHAGPQSLRCSLCPKLAFPTESALYDHVHFSHNTSREYPCLEPGCGKAFKLKAALTTHSRSHANERSHRCEVCGKQFLDRQTLGEHSITHLEVKPFQCHVCMKFLNRRSRLKMHLLTHHSEPACGKVISCKGCDEGFKDAKTAMNHLNEFGQCPDTRDVEYLQEEAPEDSQVVDGVGEWAVKSIQTREVDQVYRCEFCERVYCVADSLNLHRACHADNDNPYTCHVCSATFSSYSRCTTHKTTHGYFRGQNGSKPVPQEAFPVVKHFFWGIAYHRKKVHSQKNGATGPEDELKQQEKVTVSCADCDFTTKNKGHLLVHRKLEHSGNSTKQALFACEQCGKKYITKVGLKGHMKSHQDPESAGSHTCEICGKNFAHAAGLITHGRRVHLKETRFSCSMCDKAFYSSCDLRSHARRHTGERPFRCSVCGHAFRTKGMRNEHARVHTGERPFPCDICGLTFRRSYAMKSHRLTHAVQRNKTENSTVVLLPAEDDSTAEQSTAVDIVIYDESGEPSSSAYVDIVDEGDIGSAGVDFVIQDDVVFLDTEDMASDRDEQQPDVEEQKEHSKSPDDGSRFEELFLTVPDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -