Gcon016412.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01020879.1:11195-15384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0037 0.46 12.3 0.6 1 23 242 264 242 264 0.98 2 15 0.028 3.5 9.5 2.3 1 23 270 292 270 292 0.96 3 15 1.1e-05 0.0014 20.2 1.6 1 23 298 320 298 320 0.98 4 15 0.021 2.6 9.9 2.7 1 23 325 348 325 348 0.92 5 15 0.00077 0.095 14.5 0.2 1 23 376 398 376 398 0.97 6 15 0.071 8.8 8.3 0.6 1 23 404 426 404 426 0.91 7 15 0.00017 0.021 16.5 1.2 1 23 432 454 432 454 0.95 8 15 0.024 3 9.7 5.8 1 23 459 482 459 482 0.97 9 15 0.047 5.8 8.8 3.1 1 23 489 511 489 511 0.97 10 15 2.8e-05 0.0035 19.0 2.4 3 23 516 536 514 536 0.96 11 15 0.012 1.5 10.7 0.2 1 23 546 569 546 569 0.96 12 15 4.3e-05 0.0053 18.4 0.4 1 23 575 597 575 597 0.94 13 15 0.017 2.1 10.2 0.2 2 23 604 625 604 625 0.97 14 15 0.081 10 8.1 0.6 1 23 631 654 631 654 0.92 15 15 0.16 20 7.1 2.2 3 23 661 681 660 681 0.95
Sequence Information
- Coding Sequence
- ATGTATGTCGAAGAAGCCGTGGTGGGCCACCTGCTTGCCGGGACACTGAGAACCGACCTGTGCAGGATCTGCCTCAAGGAGAACAACGCCATGCAAAATGTGCACCAGGAGATTGTAATCAACGGAGATTCCGTAATAATCAAAGATGTCGTTTTTTCAATAACTTCCATAaagATTTCAGAAGGAGACTGTCTACCGGAATGTGTTTGCTCCGAATGCTTGCAGCAAACACTTAACCTGCACAACTTCAAACAACTCTGCAAAGAATCGGATACCATATTGAAGAACTGCATCGCTTGCTTCAACGAACAGACTCAGCAGACATTCAAGAACCGCATAGAATCCATAATAATTGTCTTGCCGGACTCAAAAAAGATTGAAACGGAtgcgaaaaaaatacaacccaaATCTGAATTGCAAACGAATGAAGGCGGTGTTAAAAATGAATCACAGTTCAATCTTGAAGAATCGCtggatttagaaataaaaagtgattttataGTCGATAAATGCAATGTGAAAAATGAAGTTGATCTTGAACAGTTGGGTTCAGTTTCCGATGCGGATTGCGAAGTCACCGAAGAGGACATCGTAAGATTACTGTCAGCTTCCGATGCTAAAAACGTTGATGCTAAAGATGATCTTTTAGTTGCATGTAAAAGAGAAATCATTGAcgttaaaaaagaaacaaacgaAACTTTACTTGACGAGCAAAAAGGCAGCTTTGAATGCACAATGTGTTTGAGtgtattttatgataaagaGAGCTTGTCCGATCACGAAAAGACTCACGGCGAAAACTCGAGGCACTTTTGCGGCATCTGCTATAGATCTTATAGGAAATTGAGCATTCTTAAGAGGCATGTGATCACACACATGGGCAAAAGGAATTTTGTATGCGTCGTCTGTAATAAGGCGTTCTTTCACAGGAATGCGCTCAGGGCGCACATGCGTTATCACCAAGAAAAGAAATACATTTGCAAATTGTGCAAGAAGGGATTTTATTTTAGGCACATGCTGATAGAGCATTTCATGGCCAagcattcgaaaaaaaaaacaaacgtttaCGAAGGAAATAAAGTGAGTGCGGCAAACGACGTTAAAATAATCGACGGAAATTTATCATTCGATTGCTCAATGTGTTTGGAATCGTTTGACAATTTATCCGATTTGATTTCGCACAAGGCGACACATCCTGAAGGCAGCCGACACGTGTGCAGAACGTGTGGGAAGACTTATTTAGAAGCGGCAACTCTAAAAAGACACTCTGTGATACACAcaggaaaaaaaacttatttatgcaCCGTTTGTGGTAAATCTTTCTTCTATCGCAACGTGCTAAAGACGCACATGATCTATCACAATGAGAAGAAGTACAAATGCGAGTTTTGCGATAAGAAATTTCACACGAGACACATTTTACGGGAGCACGTAAGACTGACGCACTCCGAAGATAGATACTCTTTCATGTGTGAAGTTTGCGGGAAGCTGTGCAGTTCTCGATGTCGTTTAGCCATACACCGAGAGAGCCACAGTAAGGTTTGCTGTCCCACTTGCGGAAAGAGTTACAAAAACATGCGTTATTACAAGGCGCATATGAGACTGCATGACGGAGAAACTGTAGTGAAAAAGACTTTTATTTGCGACTATTGCGGCGAAGAGAGATCTCTTAAAACGTTGTTAGAGTTGCACATTTTGAGTAAGCACTTGAAAGAGAGACGGTTCAAGTGTAAGGTCTGCGATAAGGCTTTTTTCAGCAAAGGCAGCTTGAATGAGCATGGCGTCGTTCACACCCGTGAGAGGCCGGAACAGTGCGGTGTATGCGATAGGCGTTTGATCAACAAGAAGGCGCTGGTTCTGCATAGTCGGTTGCACACGGGGGAAAAACCTTTTGCTTGTAATATTTGCGGGGAGCGGTTTCTCTCTACGAGTCGCAGACTGGTGCACATGAAGAGTAGGCACGGCGAACGGAGCGAGTGTTGCAAGATTTGTCCGGCCAGGTTCCATTTGCTGAACGATCTGAATAAACATGTTTTGGCGCATATGAGAGAACCTTCTAGAAAAAAGAAAGAGACTGTCTTTAATACaattcaataa
- Protein Sequence
- MYVEEAVVGHLLAGTLRTDLCRICLKENNAMQNVHQEIVINGDSVIIKDVVFSITSIKISEGDCLPECVCSECLQQTLNLHNFKQLCKESDTILKNCIACFNEQTQQTFKNRIESIIIVLPDSKKIETDAKKIQPKSELQTNEGGVKNESQFNLEESLDLEIKSDFIVDKCNVKNEVDLEQLGSVSDADCEVTEEDIVRLLSASDAKNVDAKDDLLVACKREIIDVKKETNETLLDEQKGSFECTMCLSVFYDKESLSDHEKTHGENSRHFCGICYRSYRKLSILKRHVITHMGKRNFVCVVCNKAFFHRNALRAHMRYHQEKKYICKLCKKGFYFRHMLIEHFMAKHSKKKTNVYEGNKVSAANDVKIIDGNLSFDCSMCLESFDNLSDLISHKATHPEGSRHVCRTCGKTYLEAATLKRHSVIHTGKKTYLCTVCGKSFFYRNVLKTHMIYHNEKKYKCEFCDKKFHTRHILREHVRLTHSEDRYSFMCEVCGKLCSSRCRLAIHRESHSKVCCPTCGKSYKNMRYYKAHMRLHDGETVVKKTFICDYCGEERSLKTLLELHILSKHLKERRFKCKVCDKAFFSKGSLNEHGVVHTRERPEQCGVCDRRLINKKALVLHSRLHTGEKPFACNICGERFLSTSRRLVHMKSRHGERSECCKICPARFHLLNDLNKHVLAHMREPSRKKKETVFNTIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -