Gcon000776.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01047216.1:3305-5027[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-06 0.00049 21.7 3.2 1 23 75 97 75 97 0.99 2 13 0.001 0.13 14.1 5.4 1 23 103 125 103 125 0.99 3 13 0.096 12 7.9 3.5 1 23 131 153 131 153 0.96 4 13 0.33 41 6.2 0.4 7 23 165 181 159 181 0.89 5 13 0.00073 0.091 14.5 1.3 3 23 189 210 188 210 0.98 6 13 1.4 1.8e+02 4.2 4.6 3 23 218 238 217 238 0.97 7 13 0.11 13 7.7 5.7 1 23 244 266 244 266 0.98 8 13 0.007 0.87 11.4 1.2 1 23 272 294 272 294 0.98 9 13 0.00061 0.076 14.8 0.9 1 23 300 322 300 322 0.98 10 13 5.9e-06 0.00073 21.1 0.4 1 23 328 350 328 350 0.98 11 13 0.0035 0.44 12.4 6.1 1 23 356 378 356 378 0.98 12 13 5.9e-06 0.00073 21.1 0.8 1 23 384 406 384 406 0.98 13 13 0.00065 0.081 14.7 3.2 1 23 412 434 412 434 0.98
Sequence Information
- Coding Sequence
- atgCTGGATAATGTAACGCACTCTCTCAGTACAGAAATAGgtGATCAAAATGAGGCCTCTGATGGCAGCCCAGAAGAAAAAGTCACAAATAAAACGGAAAGTCTCCACCCACGAAATgaagcaaaattaataaaacgtaaaaCACCTCACAAAAGAAAGAAACGGCATCTGATTACAAGTGTGTTTTTAAAAGAACatatatccgaagaagaacaaCCTGGTTTTACATGTCCACAGTGCAGCATCACTTGCTCCACTGCTAGTCACCTTAATGCTCACCTGAAGACTCACAGTGCAAAGAAACACTTCCAGTGCTCATTTTGTGACTACAGCTGTTCCTTGTCCACCCGTCTGAGATCGCACATGAAAACTCACAGAGAAGTCCAACCTCACGCCTGTCAACTGTGTGAGTTCACCTGCTTCTCATTAACTGAACTGAAAGCTCACACCGAGACTCACACTGAAAGCGTGTCACACAATTGCACAGACCGTGGTCTCAGTTTTGCCACCTCGAGAGACTTGGAGACCCACGAACAATCTCATCGAGACGAGAAACCAAATTTATGTCCCGAGTGCTATTTCGCTTGTTCGTCATTGCGGGAGCTGACGAGACACATCAACACGACTCACGCCGGAGACAAAACTAACTTATGCGCGCATTGCGAATTCAGTTGTTTAGACTTAAAGGAGTTCAAGACCCACATGCAGACTCACGAAACGGAGGACACTTTTAGTTGTTCTCGATGTGATTTCCGCTGCTCTCTCTTGCGTGATTTCAAACTGCATTACCGGACCCACGCAAAACTGAAGATTTATAATTGCACAAAATGCAATTTTACAGCTAACATTTTCAGCCTTCTGGCGAGACATATGCAAAGGCATTTTCGCAATAAACCGTTCCGTTGTGACCGATGCGACTACAGCACCACCGTGATGAACACGTTAGAAAGACACATGACGATTCACAGCAAAGAGAAGCCTTTTCCTTGTCCCCAGTGTGACTCTAAGTTTTCTCAACTCGGCGGATTAAATAAACATCTCAAGACTCACACCGGGGAGAAACCCTTCTGCTGCGATCTGTGTGACTACCGCTGCTCCATAATGAGTTCTTTAAAGACGCATATGAGGCGACACACCGGCGAAAAACCCTACATCTGTACTCTATGTAATTACGCCTCATCGGACTTTAGCAACTTGAACAGACACATAAAGACGCACTCGGGAGTGAAGGGTTACTCTTGCTCGCTGTGCAACTTTAAGTGCACCCGGCCTGGTAAGCTTAAAGCACATCTGACGAGACACAAGCAATCAGATCTCTGA
- Protein Sequence
- MLDNVTHSLSTEIGDQNEASDGSPEEKVTNKTESLHPRNEAKLIKRKTPHKRKKRHLITSVFLKEHISEEEQPGFTCPQCSITCSTASHLNAHLKTHSAKKHFQCSFCDYSCSLSTRLRSHMKTHREVQPHACQLCEFTCFSLTELKAHTETHTESVSHNCTDRGLSFATSRDLETHEQSHRDEKPNLCPECYFACSSLRELTRHINTTHAGDKTNLCAHCEFSCLDLKEFKTHMQTHETEDTFSCSRCDFRCSLLRDFKLHYRTHAKLKIYNCTKCNFTANIFSLLARHMQRHFRNKPFRCDRCDYSTTVMNTLERHMTIHSKEKPFPCPQCDSKFSQLGGLNKHLKTHTGEKPFCCDLCDYRCSIMSSLKTHMRRHTGEKPYICTLCNYASSDFSNLNRHIKTHSGVKGYSCSLCNFKCTRPGKLKAHLTRHKQSDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -