Basic Information

Insect: Glossosoma conforme
Gene Symbol: -
Assembly: GCA_003347265.1
Location: PZYU01046861.1:1-2162[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00057 0.071 14.9 4.4 1 23 214 236 214 236 0.97

2 11 1.6e-05 0.002 19.8 4.6 1 23 242 264 242 264 0.98

3 11 0.8 1e+02 5.0 4.8 1 23 270 293 270 293 0.96

4 11 0.023 2.9 9.8 3.4 1 21 299 319 299 321 0.95

5 11 0.00036 0.045 15.5 3.2 1 23 327 349 327 349 0.99

6 11 0.00023 0.028 16.1 5.6 1 23 355 377 355 377 0.97

7 11 0.00023 0.029 16.1 0.8 1 23 385 408 385 408 0.97

8 11 4.5e-05 0.0056 18.3 2.5 2 23 414 435 413 435 0.97

9 11 0.00062 0.077 14.8 0.7 1 23 441 463 441 463 0.98

10 11 6.9e-06 0.00085 20.9 1.8 1 23 469 492 469 492 0.95

11 11 0.00015 0.018 16.7 2.6 1 20 506 525 506 528 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00057	0.071	14.9	4.4	1	23	214	236	214	236	0.97
2	11	1.6e-05	0.002	19.8	4.6	1	23	242	264	242	264	0.98
3	11	0.8	1e+02	5.0	4.8	1	23	270	293	270	293	0.96
4	11	0.023	2.9	9.8	3.4	1	21	299	319	299	321	0.95
5	11	0.00036	0.045	15.5	3.2	1	23	327	349	327	349	0.99
6	11	0.00023	0.028	16.1	5.6	1	23	355	377	355	377	0.97
7	11	0.00023	0.029	16.1	0.8	1	23	385	408	385	408	0.97
8	11	4.5e-05	0.0056	18.3	2.5	2	23	414	435	413	435	0.97
9	11	0.00062	0.077	14.8	0.7	1	23	441	463	441	463	0.98
10	11	6.9e-06	0.00085	20.9	1.8	1	23	469	492	469	492	0.95
11	11	0.00015	0.018	16.7	2.6	1	20	506	525	506	528	0.93

Sequence Information

Coding Sequence: GACCTCGCTGCCGCTATCACAGGCGCCGCCATTGCTCGCGCTTTTCCTGTACTCTATTCCTGTACCGTGCAGCCTCGACTGCTAGCTGTCATGATATGGGAATCATTAGATAAGGGATATAGAAATTCTTCAAATAAATCCACAAAGGCATACACAATGGAGAACGTAGAAGGAAATGAAATAGCTAGTAATATCCAGATGCAAGAAATCGACCAAATAGAAGATGATATTGATGATGGGGAGAGAAGTCCTGGCACATACTTTGTTGACCAACAAGGACACTATTACTTCCAATCTCAATCTGTGATGGCATCAGTTGGAGATAATGGGGCAAACGAAGATGATATAACATTGACTGATGAATTAAGCCAAATGTTGATAAACACTGATTATCAGACATTAACCATAGTTCCATCAGACTCCCTCAGTGGAGAGCTCAGCTATGTCCTGATAGTGCAGCAGCCCGAGGATGCAGGACAACAGGCACAAGAGAAAGTCAACGAGGACAACAACCTGACTGTCTATAACTTTGACGATACGGAAGAGTTGGAAGAAGGCCTCGATGTCGATTCAGGTGCTGAGGATGACAAGTCTAAGATCATCAAAGTTCCTTTAAAGTCACAGATTGTTACACAGGCTCACATGTGCAAATACTGCAACTACAGTAGTCCGAAGAGATATCTTCTGTCTCGACATATGAAGTCACATTCTGAGGATAGGCCGCACAAATGTTCAATTTGCGAAAGGTGCTTTAAGACCCTAGCCTCACTACAGAATCATGTCAACACCCACACAGGAACTAAACCTCACCGATGTCGCTTTTGTGACAGTGCATTCACAACATCTGGAGAGTGTGTGAGACATGTTCGTTATCGCCACACACATGAGAATCCACACAAATGTAATGAGTGTGATTATGCTTCAGTGGAGCTTTCAAAGCTCAAGCGCCATGTCCGCTGCCACACTGGTGAGCGACCATATCAGTGTGAACATTGCACATACGCATCTCCCGATACGTTTAAGTTAAAGCGTCATCTGCGCACGCACACCGGAGAGAAGCCATACATGTGTGACTCCTGTCATATGTGCTTTACACAATCCAGTTCTCTCAAGgcacacaaaataaaacataacatcgGTGACAAGCTCATCTTCCCTTGTGAGCTGTGCCCTACGACCTGTGCCCGCAAGACTGATCTCCGCATCCATGTACAGAAGCTGCACACCTATAAGCCGCTCAAGTGTAAACGCTGTGGCAAGTCTTTCCCTGACAGATACAGCTACAAGCTGCACAACAAGACCCACGAGGGAGAAAAGTGTTTCAAGTGTGAGATGTGTCCTTATGCTTCTATCTCTCTGCGACACCTTAGTTCACACATGCTTATCCATACTGATGAGAAACCATTTGCTTGTGAGCAGTGTGACCAGACTTTTAGGCAAAAGCAGCTGTTGAAGCGGCACCAGAACCTGTACCACAACCCTGAGTATGTGCAACCCAGCCCACGGGAGAAGAGTCACGAGTGCCGAGAGTGCAGACGCCAGTTCCGGCATAAGGGGAACCTCATCCGACACATGCCCATACATGACCCGGACTCGGAAATACATGAGAGGAGCTTGGCTCTCAAGTTGGggcgacaaaaaaaaattcccaTCATTGAAGGACAATCAGTAAAAGTGGTGCAAAGCGGCTTGGACTCGGATGAGGAGCCTGAAGTGGAGGGCATGGATGAGAACCAGATGGATGATCACCAGCAGTATGTTGTGCTAGAAGTCATCCAACTTGGTGATAGTGACCAACTTGCCGAAAGTAGTAATGAAGCAATATgttaa
Protein Sequence: DLAAAITGAAIARAFPVLYSCTVQPRLLAVMIWESLDKGYRNSSNKSTKAYTMENVEGNEIASNIQMQEIDQIEDDIDDGERSPGTYFVDQQGHYYFQSQSVMASVGDNGANEDDITLTDELSQMLINTDYQTLTIVPSDSLSGELSYVLIVQQPEDAGQQAQEKVNEDNNLTVYNFDDTEELEEGLDVDSGAEDDKSKIIKVPLKSQIVTQAHMCKYCNYSSPKRYLLSRHMKSHSEDRPHKCSICERCFKTLASLQNHVNTHTGTKPHRCRFCDSAFTTSGECVRHVRYRHTHENPHKCNECDYASVELSKLKRHVRCHTGERPYQCEHCTYASPDTFKLKRHLRTHTGEKPYMCDSCHMCFTQSSSLKAHKIKHNIGDKLIFPCELCPTTCARKTDLRIHVQKLHTYKPLKCKRCGKSFPDRYSYKLHNKTHEGEKCFKCEMCPYASISLRHLSSHMLIHTDEKPFACEQCDQTFRQKQLLKRHQNLYHNPEYVQPSPREKSHECRECRRQFRHKGNLIRHMPIHDPDSEIHERSLALKLGRQKKIPIIEGQSVKVVQSGLDSDEEPEVEGMDENQMDDHQQYVVLEVIQLGDSDQLAESSNEAIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00751392;
90% Identity: iTF_00751392;
80% Identity: -