Basic Information

Insect: Glossosoma conforme
Gene Symbol: -
Assembly: GCA_003347265.1
Location: PZYU01026226.1:20944-23912[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.6 8.2e+02 2.1 0.6 5 19 306 320 305 324 0.83

2 12 0.034 4.3 9.3 0.1 1 23 327 349 327 349 0.84

3 12 5.3 6.5e+02 2.4 0.4 3 23 358 378 356 378 0.85

4 12 1.3e-05 0.0016 20.0 3.1 3 23 385 405 384 405 0.96

5 12 2.4e-05 0.0029 19.2 3.5 1 23 411 433 411 433 0.99

6 12 0.00051 0.063 15.0 0.3 2 20 440 458 439 460 0.94

7 12 2e-05 0.0024 19.5 0.5 1 23 472 495 472 495 0.93

8 12 0.18 23 7.0 0.1 3 23 504 524 503 524 0.96

9 12 0.00066 0.082 14.7 0.7 1 23 535 557 535 557 0.98

10 12 4.5e-05 0.0056 18.3 7.2 1 23 563 585 563 585 0.99

11 12 0.0015 0.18 13.6 0.3 3 23 593 613 591 613 0.98

12 12 4.3e-05 0.0054 18.4 1.3 1 23 619 642 619 642 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.6	8.2e+02	2.1	0.6	5	19	306	320	305	324	0.83
2	12	0.034	4.3	9.3	0.1	1	23	327	349	327	349	0.84
3	12	5.3	6.5e+02	2.4	0.4	3	23	358	378	356	378	0.85
4	12	1.3e-05	0.0016	20.0	3.1	3	23	385	405	384	405	0.96
5	12	2.4e-05	0.0029	19.2	3.5	1	23	411	433	411	433	0.99
6	12	0.00051	0.063	15.0	0.3	2	20	440	458	439	460	0.94
7	12	2e-05	0.0024	19.5	0.5	1	23	472	495	472	495	0.93
8	12	0.18	23	7.0	0.1	3	23	504	524	503	524	0.96
9	12	0.00066	0.082	14.7	0.7	1	23	535	557	535	557	0.98
10	12	4.5e-05	0.0056	18.3	7.2	1	23	563	585	563	585	0.99
11	12	0.0015	0.18	13.6	0.3	3	23	593	613	591	613	0.98
12	12	4.3e-05	0.0054	18.4	1.3	1	23	619	642	619	642	0.96

Sequence Information

Coding Sequence: ATGGCTGCAGAAGGTGACGGCTTGCCAGCTTATCTCTGCCTCGACTGTCTGGACACTCTCAACCACGCGCATCAGTTCAAGAACGAGTGTCTGCGCATCGACAGGGAACTCAAGGAGCGCCTCAGAGAGATGAAAGAAGAAGCTGCGCAGAAACAAGcggaaaaaaagaagaaaaagaaaaaagaaaagaaattcgACCCCATGAACATCAAATTAGAGGATCTTTCCGATGATCAGGGCATGGACGAAGACTGTTACTACGTTGTAGTCATCAACCAAGGTAAAGACGGAACTCAATCAGTTAAAGCCATTAAAATGGAAGATCCAGATGATCCTCCGGTGCAAGAAGACATTCAAGAAGAGGTgcctttaaatataaaaaccgaACAAGTCCAGAGTCTCGAAAATGAAGAGAACGATTACGCAGAAGACGATGCAAACGATCAACAATTTGGTGAAGAAGACCAACAGATAAATGACGAGGTTGTGGAAGGCATGGTCGATGTCACATTCGGCGAAGAACTGCCTATAGAAGAAACACTAGTCGAAGAACACATTATTGTCAATTCGAACACTCTCAACATGGTCGACGGAGTGTTGGAAGAACCCGGCGAACCGTCGGAAGAAgataaattgaatttcattcAGGTGTTGGCTGAAAATGGGGACATGGTCGATGATGACAACATCATTAGGTATGCTGATGATACAGTGGCTCTTGTTGGAGATGTTTTTTCTGGTGAGGTCGCTTTTGGAGAAGACGGAGTCGCTTACACTCAAGAAGAGGTCGTAGTTAGCAATGGAGATGAAGGATTTGAAATTCTAAACGCAGACGGAGCAGAGTTTGTAATCGATTACGAAGACGATGAAGATACGATAACCGTGTATCAACAAGAGGACGGCTCTTTTTTATGTGACTGCGGAAAGTCATTCATGGAGTTCCTCGATTACGAAAAACACAAATGGTCGCACAACTCGTTCACTTGCCCCATTTGCTCTAAAGGCTTCGAATCTGCAGAAATCGTCAAAGGGCATTTGATGCTGCACACTTCTAGCGACGCCCATTTAATATGTCCGTTTTGTAAGCTTCTCGTTAAAAGAAATCAACTCGTTTCGCATATAAAGATGAACCACAGTAATTACAAGCCATGCTGCACCATTTGCAATAAATCTTTTGTAaatgaaacaaatttaaaaagacaCACGTTGATTCATCTCGGGGTTAGACAGTACGAGTGCGATATATGTCACAAGTTCTTCAGTCAGAAGATCTCGATGCAGAATCATCGTTTGACGCATCGAGACATGAACGAAGTCAAATGCGAAACGTGCAACGCCAAGTTTACAACACAAGATACGCTGAATTCACATTTAGAACAAGGCTGCGAAGGTTCGATGGATAAAGACGGAAAGTTTGTTTGCAGCGCTTGCGGGAAAGAATACAGTTCTTCGTCTTCTTTGAAGAGCCACATGGAGTTTATGCATAATACGCAGCGTGTCGAATTGTTGTGTTCGGAATGCGGAGAGGTCCTTCCGACGAGGAAGGCCATGTACTCGCATTCATACACGCATCGACAAAGCCGCACGAAACATTTGAAGAGATTCTCTTGCGGGATATGCGGCAAGGGATGCGCCAGTCACGCGATGCTGCTGATGCACGAGAGGGTCCACACGAACGAGCGGCCTTTCAAATGCTCGCACTGCACTCTAGCATTCAAGACTAAGACGCACTTGACGACGCATCAGCTGACGCACACTCAAGAGAAGAGATTCGGCTGCTCTATTTGTATGAAGTTCTTCGCTCTGAAGGGGAATCTCGTGGTCCATCTGCGCACCCACACCGGGGAGCGGCCGTACATCTGCTCCATCTGCAACCAGGCGTTCATCGACTCCAAGTACCTGAAGAAGCATAAGCTGCGCCGGCACGACATTGGTAATACACACTGGAATAAGTACTATTAG
Protein Sequence: MAAEGDGLPAYLCLDCLDTLNHAHQFKNECLRIDRELKERLREMKEEAAQKQAEKKKKKKKEKKFDPMNIKLEDLSDDQGMDEDCYYVVVINQGKDGTQSVKAIKMEDPDDPPVQEDIQEEVPLNIKTEQVQSLENEENDYAEDDANDQQFGEEDQQINDEVVEGMVDVTFGEELPIEETLVEEHIIVNSNTLNMVDGVLEEPGEPSEEDKLNFIQVLAENGDMVDDDNIIRYADDTVALVGDVFSGEVAFGEDGVAYTQEEVVVSNGDEGFEILNADGAEFVIDYEDDEDTITVYQQEDGSFLCDCGKSFMEFLDYEKHKWSHNSFTCPICSKGFESAEIVKGHLMLHTSSDAHLICPFCKLLVKRNQLVSHIKMNHSNYKPCCTICNKSFVNETNLKRHTLIHLGVRQYECDICHKFFSQKISMQNHRLTHRDMNEVKCETCNAKFTTQDTLNSHLEQGCEGSMDKDGKFVCSACGKEYSSSSSLKSHMEFMHNTQRVELLCSECGEVLPTRKAMYSHSYTHRQSRTKHLKRFSCGICGKGCASHAMLLMHERVHTNERPFKCSHCTLAFKTKTHLTTHQLTHTQEKRFGCSICMKFFALKGNLVVHLRTHTGERPYICSICNQAFIDSKYLKKHKLRRHDIGNTHWNKYY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -