Gcon025724.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01009541.1:20413-22068[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00046 0.057 15.2 3.8 1 23 235 257 235 257 0.97 2 11 8.6e-06 0.0011 20.6 2.7 1 23 263 285 263 285 0.98 3 11 9.2e-06 0.0011 20.5 1.5 1 23 291 313 291 313 0.98 4 11 0.0055 0.68 11.8 1.1 1 23 319 341 319 341 0.98 5 11 3.8e-06 0.00047 21.7 0.7 1 23 347 370 347 370 0.95 6 11 0.0037 0.46 12.3 4.5 1 23 376 398 376 398 0.98 7 11 0.0025 0.31 12.8 2.4 1 23 404 427 404 427 0.94 8 11 0.19 23 6.9 0.4 2 23 433 451 433 451 0.83 9 11 5.5e-05 0.0068 18.1 5.5 1 23 457 479 457 479 0.98 10 11 0.0033 0.41 12.5 0.6 1 23 485 509 485 509 0.96 11 11 0.00073 0.091 14.5 4.6 1 23 515 538 515 538 0.96
Sequence Information
- Coding Sequence
- atggaaaatatcTGTCGGATTTGCTTAAGAAATTCTCTTCCTCTATTGCCTCTGTTTAGTGATAGTGAAAAAGGGTCAATATCCTCACAAGTCATGCAGTGCGCTTCTGTTGAAATTTACTCTGACGATGGATTTCCTGCCAACATTTGCATGGGATGTAAAGAAGAGCTAGCGACCGCTttggaatttaaattaaagacgGAACGTTCTGATAAAAAGCTGAGAGCATCGGTGGCTATTATCGTGCAGACCGCGGACAACAAAGATCAAGAAGAAAATGATACGTTCGGCAGTTTTGAAGACTCCGATATTTACAACAcagaatgtaaatttaataaaagtgatttattaaacgGAACTTTAAATATTAGCAAATCGCAAGccactaaaaataaaagtaatcgaAAAAGAAAGGTCATCGGTAATAATCGAAACTGTTTTGCTAAAAGtaaaactcaattaaaatacattgacGCTGTTAAAAACGATAAACAATTAGTTGAAAGATATGAACAATCTAATGatgacataatattaaaaatgcctCAATCAAACCAAAGTATCGGTTACGGTGATGCGAAACCGGAAAATAcgattgatgaaaatattagcGAAAACATTTTGGATGACAAATTATTAACGAGCGATCCTTCTTCCAATGATAAGACGAACTTAAAAAACAGGCAAAAGAGATCCAAGATCCATCACTGCGAACACTGCGGGGTGAAGGTCACGACGTACAGCTCACTGGTGGTGCACATCCGCAGCCACACTGGCGAGCGCCCCTTCTCTTGCTCCCATTGTCCGCGCGCCTTTACCGGAGCCAGTGCCTTGCACTCGCACATGAAGCGACACCAAGGGGTCAAGCCATACGTCTGCAACTACTGCGGCAAACAGTACAGCCACAAGCCCGGCTTGAGGGAACACATCTACAGCCACACCGGAGAGAGGCCGTTCCCGTGCGACCTCTGCTCGCTGAGCTTCAGGAGCCGCAGGATCTTGTTGTCGCATCAGAAAAGGCATTCGGGCATCAGACCTTACTCCTGCCCCGTCTGTTCCAAATCCTTCTTCACCAAGTCATACCTTAAAGCGCACGGCGACACCGTTCACGCTAAACTGACAAGATACGAATGCtcgttttgtaaaaaaacattttacaacaaACATCCATACGACTCGCATCTAAAAATACATACCGGAGAAAAGCCTTTTCATTGTTCTCTTTGCCCCTTCAAATTTACGAGAAAAGACGTCTTGAGAGATCACGTGAAAGCGCGGCACAGCGAACGGTCTGGAGAGTGCGCCGTCTGCAAGAAGCGCTTCTCAAATTTGGAGGTTCACTCACAAGTGCACGACCGAGACAAGAAATACTGTTGTCACATCTGCTCCAAGAAGTTCTCGCAGGAAAGCTCTCTGAAGGGCCACATCAGCAGACACTCCAGGGAGAACTCCTTTCCTTGTCATCTCGACGGCTGCTCCAAAGCCTTCGACAACGAGAACGGTCTCAAGTATCATTTGGTGAAGCATTCGGGTGTTGCACAGTTTCACTGTCAGCACTGCGACAAGGAATTCTTCCGAGTCGCCGAGCTCACCAAGCATGTGAAAAACAATCATTTGAACGTACCACAGATGACTGTTACGAGAAGTAATTCTTAA
- Protein Sequence
- MENICRICLRNSLPLLPLFSDSEKGSISSQVMQCASVEIYSDDGFPANICMGCKEELATALEFKLKTERSDKKLRASVAIIVQTADNKDQEENDTFGSFEDSDIYNTECKFNKSDLLNGTLNISKSQATKNKSNRKRKVIGNNRNCFAKSKTQLKYIDAVKNDKQLVERYEQSNDDIILKMPQSNQSIGYGDAKPENTIDENISENILDDKLLTSDPSSNDKTNLKNRQKRSKIHHCEHCGVKVTTYSSLVVHIRSHTGERPFSCSHCPRAFTGASALHSHMKRHQGVKPYVCNYCGKQYSHKPGLREHIYSHTGERPFPCDLCSLSFRSRRILLSHQKRHSGIRPYSCPVCSKSFFTKSYLKAHGDTVHAKLTRYECSFCKKTFYNKHPYDSHLKIHTGEKPFHCSLCPFKFTRKDVLRDHVKARHSERSGECAVCKKRFSNLEVHSQVHDRDKKYCCHICSKKFSQESSLKGHISRHSRENSFPCHLDGCSKAFDNENGLKYHLVKHSGVAQFHCQHCDKEFFRVAELTKHVKNNHLNVPQMTVTRSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -