Basic Information

Insect: Glossosoma conforme
Gene Symbol: -
Assembly: GCA_003347265.1
Location: PZYU01006880.1:30258-32822[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.4e-05 0.003 19.2 2.6 1 23 201 223 201 223 0.98

2 11 8.9e-06 0.0011 20.6 4.9 1 23 233 255 233 255 0.97

3 11 0.00069 0.085 14.6 2.9 3 23 263 283 261 283 0.95

4 11 0.057 7 8.6 7.0 1 21 289 309 289 312 0.94

5 11 1.6e-06 0.00019 22.9 2.2 2 23 320 341 319 341 0.96

6 11 3.2e-08 4e-06 28.2 1.7 1 23 347 369 347 369 0.98

7 11 0.17 21 7.1 3.2 1 23 378 403 378 403 0.95

8 11 0.00018 0.022 16.4 0.1 1 23 409 431 409 431 0.96

9 11 7.2e-06 0.00089 20.8 1.7 2 23 438 459 438 459 0.97

10 11 0.19 24 6.9 1.6 1 23 465 488 465 488 0.94

11 11 0.039 4.8 9.1 4.1 1 23 493 515 493 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.4e-05	0.003	19.2	2.6	1	23	201	223	201	223	0.98
2	11	8.9e-06	0.0011	20.6	4.9	1	23	233	255	233	255	0.97
3	11	0.00069	0.085	14.6	2.9	3	23	263	283	261	283	0.95
4	11	0.057	7	8.6	7.0	1	21	289	309	289	312	0.94
5	11	1.6e-06	0.00019	22.9	2.2	2	23	320	341	319	341	0.96
6	11	3.2e-08	4e-06	28.2	1.7	1	23	347	369	347	369	0.98
7	11	0.17	21	7.1	3.2	1	23	378	403	378	403	0.95
8	11	0.00018	0.022	16.4	0.1	1	23	409	431	409	431	0.96
9	11	7.2e-06	0.00089	20.8	1.7	2	23	438	459	438	459	0.97
10	11	0.19	24	6.9	1.6	1	23	465	488	465	488	0.94
11	11	0.039	4.8	9.1	4.1	1	23	493	515	493	515	0.98

Sequence Information

Coding Sequence: atggcggtcgaaatgcaGGATCCCAATGGAGTCAGTAAGATTTGCAGGACTTGCCTCATGAGCAATGAACCGTTGATTGAGATGTTCAGCCCTTATAATATGTCATCAGAAGAGAAGATTACTATACGCGATATGTTGCAGTCCATTGCTTACGTTCagATTCATTTTGGTGATGGCCTCCCGGCAGAGATTTGCAAGAGCTGTGCTGACAAGGCTAGCGTCGCTTATCATTTCAAAGTTCTGTGCGAGCGCTCGGACGCCATGCTTCGTAACTCGGTGTTCTCTGATCATCTGCTCAAGCTGGAGGTTGTGCTGCAAGACAGTCTCCCCGCAGACCTCGCAGAGAGTCCCCTGCTGCTCACCGACACCTATGAAGACATCACCACGCAACAGTTCTCTGTCAAAACGAAACAAGATAAAAACACAGCCCCAatgtttctcaaaataaacCAAATATCACCCACAAAAATTGATAGACCTCCAACGCGATGCAGGTTAAGAAGAcagataaaaaatgataaacattacataaactcggacagcgacgatgatgacGACAATTTATTAATGGATAACTGTTCTGTAGATCAGGAAGGATCGTTTACATGTTCAAATTGCTCACAGGTGTTTACAGATTCTGATGAATTTCGCACGCATAAAAAGACACACTCCGATGCCGCCATCGATACGCAGCGCCACAGTTGCCCCGTTTGCAAGAAAACTTTTTCGAGGATCTACACGCTAAAGCACCACATGGTGACGCACGGCGATTACAAGGCTCATCTCTGTCCGATGTGCGGAAAACGGTTCCATCTGTCTGCGGGGCTGCGGCAGCATCTGAAGTATCACCGAGGCGTGAAACCTCACAAGTGTCAACAGTGCGATAAGAGATACTTCAATAGGCATCTGTTAAGAGAGCACGAGCGTTGTGCTCATTCTCAAGATCGCCATAACTGCACGTGTCCACAATGCGGTAAAACGTTCACGGCAAAATCATCATTGactatgcatttaaaaatacacaccgGAGAGAGAGCTTATCCGTGTTCGGAATGCGGCAAACGTTTCACTAGAAGTGCTTATTTGAATGCTCACATGCGCCACCACACTAAAGACCCGCCCGCACGAACGTTTGCTTGTCACATTGACGGTTGCGACCGCAAATTCTTAGCAAAGGCGTCTCTGCAAATACATATAAGACACTGTCACACATTTGAAAAGCCTTATCTTTGCAAATTGTGTCCGAAAAGTTTTTCTTCGATGCCGGGACTTACCGAACACGGTCGCGTTCACAGTAAAGAAAAACCTGAAGAGTGTACGAGTTGCGGGAAACGATTTGTCAACAAGCAATCGCTGAAGAAGCACGTCCGGCTGCACACGGGTGAACGGCCATATCCCTGCGCTCATTGCGACGAACGCTTCCTGTCGAGCTCGCGCCGTAACGAACACGTCCAGACGAAGCACATGGAGAGGAAGCACGAGTGTTCCGTTTGCTTGAAGAGATTCCACTTGCGGCGCACGCTCACGGGCCACCTGCGCGTTCACTCCGGCGAGAAACGAAGACGAGGTCGAGCTGAAGACGCTCCGGATAATAAACAGAACGTTCCGGAGCCGAGTCTTGAAGTTACAGTTTAA
Protein Sequence: MAVEMQDPNGVSKICRTCLMSNEPLIEMFSPYNMSSEEKITIRDMLQSIAYVQIHFGDGLPAEICKSCADKASVAYHFKVLCERSDAMLRNSVFSDHLLKLEVVLQDSLPADLAESPLLLTDTYEDITTQQFSVKTKQDKNTAPMFLKINQISPTKIDRPPTRCRLRRQIKNDKHYINSDSDDDDDNLLMDNCSVDQEGSFTCSNCSQVFTDSDEFRTHKKTHSDAAIDTQRHSCPVCKKTFSRIYTLKHHMVTHGDYKAHLCPMCGKRFHLSAGLRQHLKYHRGVKPHKCQQCDKRYFNRHLLREHERCAHSQDRHNCTCPQCGKTFTAKSSLTMHLKIHTGERAYPCSECGKRFTRSAYLNAHMRHHTKDPPARTFACHIDGCDRKFLAKASLQIHIRHCHTFEKPYLCKLCPKSFSSMPGLTEHGRVHSKEKPEECTSCGKRFVNKQSLKKHVRLHTGERPYPCAHCDERFLSSSRRNEHVQTKHMERKHECSVCLKRFHLRRTLTGHLRVHSGEKRRRGRAEDAPDNKQNVPEPSLEVTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -