Gcon034838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossosoma conforme
Gene Symbol
-
Assembly
GCA_003347265.1
Location
PZYU01002025.1:53156-61906[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.58 72 5.4 2.1 6 21 12 27 7 28 0.88
2 12 0.29 36 6.4 0.1 2 20 34 52 33 53 0.92
3 12 0.37 46 6.0 0.2 1 12 232 243 232 252 0.89
4 12 6.5e-05 0.0081 17.8 4.7 1 23 457 479 457 479 0.99
5 12 6.9e-06 0.00085 20.9 0.7 1 23 508 530 508 530 0.99
6 12 4.2e-06 0.00052 21.6 1.9 1 23 581 603 581 603 0.98
7 12 0.00024 0.029 16.1 2.0 1 23 619 641 619 641 0.98
8 12 1.8e-06 0.00022 22.8 4.6 1 23 647 669 647 669 0.98
9 12 0.0023 0.28 13.0 6.7 1 23 675 697 675 697 0.98
10 12 2.3e-06 0.00028 22.4 0.4 1 23 703 725 703 725 0.98
11 12 4.8e-05 0.006 18.3 0.2 1 23 729 751 729 751 0.98
12 12 0.00029 0.036 15.8 0.2 1 23 759 782 759 782 0.95

Sequence Information

Coding Sequence
ATGGGAACTCTGTTACTCGACTGTCCTCTATGTTGCGGTAAAACTTTTCCCTGTCAGAAAACTTTAAAACGTCACCTGTTGAGTTTGGCAGACGATATTAGCTGTCCGGAATGCTCCTTAAAATTCAACAGTATCAGGTCATTCGCCGAGCATTTGGGAGATAACTGCGAACAGAATAAGCGACCTAAGGAAATATCAAACATCGCCTCGACCCGAACTGCCGCTCTGAGCTATTGTGATACCTGTGACAGTAAGgtgaatgaaattgaaaaaagtaaaagtgatatttataataatttaaaaaataaccttaatCTATTTGAAGATGATGAGATTCAAGGCAACCAAGCTGTTTCAGGATTAGATGgtAATAAGTTGAATTCTGAAGATATCAAGGGAATGCATAGGAATTGCAAACAAAGTGAGATCGATAGGCTAAAAGAAAGCAAGATGGAGAATGAAATAGTCAGCGTCCAAGTGTTGAAGCAGGAAGACTTCAGTGAGCAGCTGCAGGTGCGGCTGCTGAAGGCCGCCGAGGACGGCAGCATCGTCATTCTGACTGATGGGCATCACGACACACTCCATCAAGATGCCGAGATTATCGAGACAGAAAATGAGCTGGTTACCATCAATTCTGTTGACGGTGAAATAGCCGACGTAAACCTAGAGGAAGATGAACAAATGGAAGGCATGTACAGTTGCAATAGCTGTGGAATCAGCTTTACGTCTGTAATAGAGCATATAAAACTGTATCATAATGAACAAGAAGTGGTTGTTGAGATGGAGGATAATTGTCTTCTCGATGAATCCCTCCACGAAGTAGCCGTGCTGGAGGTAGCGCCTGATGACAACAGCGAGGGCTTAGACGAGATCTGTAAAGATGAAAATATCGAGGATGAACAAACGGAAACAGTAAATGAAACCAAACGAATCCTTTTGGAAACAGGAGACATTGTTTCTACCACCCAGGGTGAAATTCAGGGAACAGTAAGTATAGGCGAACGTTGGCGGACTCCTCAAATTCTTAACACTCTGCGTGAGGAACAATGTGTTGACAGAGATGGTCGTTGGTACACTAGGAAAGTGGTGCAGATTGAACGTTTCTGGGATACCACAGACGTGAAGACTGAAATAACCAATGATGGCTTTCCGTTAGATGACGAAAATGttaaaggAGAGGATATTTTGGATACTGATGATGTTAATGGAGAGGAAGCTAGTACGGAAGCTTATCTGGATGATCAGGGGGAAGATTTGGAGGACGACAATCCAAACATTTCACGAATCTATCATTGCACCCACTGCTGTACACAATACCTCACTATGCCAGattttgaaaatcatatttGCAATCCGCAACAAGGAAAATACAAATGTGATCATTGCTCCGTTAGCTACAACAATTCTAAATCTCTTTGTGCTCACATGAAGGTACACAAAGGGttgaaagtaaatgaaaaaagaatGACTACCAAAAATGAAGGTTACAATGAAGACGATACGAGTCGGTTGGTGGGCCCTTTCAAGTGTGCCGTGTGTGACACTGTGTTCCCGTCCAACAAGTCCTTGAGGCTGCACCGGCGCATGCACGAGCCGGTGCGCGCGCGGCCCGTGGAGGCGCCGGTGGAGTACGCGGCCGGGGCCTCGGTGGCCGAGCGCTTCCACTGCGCGTTGTGTGACAAGTGGATCCACGTGGGATACCGGCGCATCCACGAGGCTGTGCATACAGGAGACACCGAGTACAACTGTGACATTTGCAATCGAAAGTTTCACACCAAGGATAACCTGGCAATGCACATGAACGTTCACAATACAGagaagATAACCAGTGTGAAGTCTGATAAGCTCTTACCATATGAATGTAATTATTGCAATAGACAATTTGCTCGCCCTCATGAAAAAGTTAAACATGAAAGGATACACACAGGTGAAAAGCCGCACAGCTGTGATATTTGCGGAAAGTCCTTCCGAGTGTCTTACTGTCTAACACTGCACATGAGGACCCACACGGGGGCTAGGCCCTATGTATGTCAACACTGCGGCAAgcgGTTTAAAGCCCACAGCGTGTATAATCATCATTTGTTAACACACTCAGATGTCCGTGCTTACAAGTGTCCATATTGCCCGAAAGCGTTTAAAACTTCAGTACAGCTAGCAGGACACAAGAATTCACATACCAAACCATTTTCATGCACTGAATGCAATagGCCATTTGCTTCATTATATGCAGTTAGAGTCCACATGGAGACGCACAAGAGACAGAACAACTTGAAGTTCAACTGTCAGTACTGTGGAGCAAGCTATGCCCGGGCCTTTGCTCTCAGAGATCATCTCAAAGCTCAACACTTCATTGCCGAgtttgataaAGATTCAGAACCAGATGTTAATGCAGCTGCTCTCTCCATTATACCCAAGATGGAAGGTAATGTTGAGaTGGATAAATTAGTCATGGCAGATAGTGATGGAGAAATTGAAATCAACACGGAATAA
Protein Sequence
MGTLLLDCPLCCGKTFPCQKTLKRHLLSLADDISCPECSLKFNSIRSFAEHLGDNCEQNKRPKEISNIASTRTAALSYCDTCDSKVNEIEKSKSDIYNNLKNNLNLFEDDEIQGNQAVSGLDGNKLNSEDIKGMHRNCKQSEIDRLKESKMENEIVSVQVLKQEDFSEQLQVRLLKAAEDGSIVILTDGHHDTLHQDAEIIETENELVTINSVDGEIADVNLEEDEQMEGMYSCNSCGISFTSVIEHIKLYHNEQEVVVEMEDNCLLDESLHEVAVLEVAPDDNSEGLDEICKDENIEDEQTETVNETKRILLETGDIVSTTQGEIQGTVSIGERWRTPQILNTLREEQCVDRDGRWYTRKVVQIERFWDTTDVKTEITNDGFPLDDENVKGEDILDTDDVNGEEASTEAYLDDQGEDLEDDNPNISRIYHCTHCCTQYLTMPDFENHICNPQQGKYKCDHCSVSYNNSKSLCAHMKVHKGLKVNEKRMTTKNEGYNEDDTSRLVGPFKCAVCDTVFPSNKSLRLHRRMHEPVRARPVEAPVEYAAGASVAERFHCALCDKWIHVGYRRIHEAVHTGDTEYNCDICNRKFHTKDNLAMHMNVHNTEKITSVKSDKLLPYECNYCNRQFARPHEKVKHERIHTGEKPHSCDICGKSFRVSYCLTLHMRTHTGARPYVCQHCGKRFKAHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTECNRPFASLYAVRVHMETHKRQNNLKFNCQYCGASYARAFALRDHLKAQHFIAEFDKDSEPDVNAAALSIIPKMEGNVEMDKLVMADSDGEIEINTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-