Gcon008052.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01022520.1:9149-19405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00015 0.018 16.7 2.4 1 23 182 204 182 204 0.94 2 31 0.00057 0.07 14.9 0.4 1 21 250 270 250 271 0.95 3 31 0.012 1.5 10.7 2.1 2 21 294 313 293 314 0.92 4 31 1.5 1.9e+02 4.1 0.9 2 20 343 361 343 363 0.90 5 31 0.0075 0.93 11.3 0.9 2 23 374 396 373 396 0.96 6 31 0.001 0.13 14.1 1.0 2 23 438 459 437 459 0.94 7 31 0.0022 0.27 13.0 7.8 1 23 480 503 480 503 0.94 8 31 0.00035 0.044 15.5 0.4 1 23 519 542 519 542 0.95 9 31 7.4 9.2e+02 1.9 0.5 2 23 568 589 567 589 0.95 10 31 6.3e-05 0.0079 17.9 0.6 1 23 600 622 600 622 0.98 11 31 0.011 1.4 10.8 0.2 1 23 704 726 704 726 0.97 12 31 0.0014 0.18 13.6 0.9 2 23 737 758 736 758 0.97 13 31 9.5 1.2e+03 1.6 2.0 2 23 770 791 769 791 0.89 14 31 0.0023 0.29 12.9 1.6 1 23 797 819 797 819 0.98 15 31 0.12 15 7.6 0.5 1 23 845 867 845 867 0.95 16 31 0.00098 0.12 14.1 1.2 1 23 877 899 877 899 0.97 17 31 0.0016 0.2 13.4 4.3 1 23 907 929 907 929 0.99 18 31 0.0025 0.31 12.8 0.1 3 23 950 971 949 971 0.96 19 31 0.15 19 7.2 4.9 1 23 991 1013 991 1013 0.92 20 31 0.18 22 7.0 2.4 1 23 1020 1042 1020 1042 0.96 21 31 0.046 5.7 8.9 5.7 2 23 1053 1075 1052 1075 0.93 22 31 0.011 1.4 10.8 1.5 1 23 1098 1120 1098 1120 0.97 23 31 0.077 9.6 8.2 0.4 2 20 1124 1142 1123 1144 0.92 24 31 1.2 1.5e+02 4.4 2.3 2 23 1163 1185 1162 1185 0.94 25 31 0.6 74 5.4 0.7 2 23 1201 1222 1200 1222 0.96 26 31 0.021 2.7 9.9 4.5 3 23 1230 1250 1230 1250 0.98 27 31 0.096 12 7.9 0.5 2 23 1261 1283 1260 1283 0.95 28 31 1 1.3e+02 4.6 4.4 2 23 1300 1318 1300 1318 0.86 29 31 1.4 1.8e+02 4.2 0.8 2 23 1371 1392 1371 1392 0.94 30 31 0.0036 0.45 12.3 1.3 2 23 1431 1453 1430 1453 0.97 31 31 2.3 2.9e+02 3.5 5.9 1 19 1490 1508 1490 1510 0.94
Sequence Information
- Coding Sequence
- ATGTCTCTCGTACTCAAGCTCAGCAAGTGCCGCCTGTGCCTCAAGTTGGGGGACTTCTACTCGATATTCGCCGTCGATAACTCGATGCAGCTGTCCAAGATGGCAATGGCCTGCTCGGAGATCAAGGTTCAAGAAGGCGATGGCTTACCAGACAAAGTGTGCGGGGAATGCATTGAGAAGTTGAGTTCAGCGTACTTGTTCAAGCAGCAATGTGAGAGATCTGATGTGGAGCTCAGGAAGTCGCTGCTGACTAATTCagCGGCGACTGAGATCTCTTCATACGGCCGCAGAAGTTCCGATTCGGGATTCTCGACACGGACAGATGTCTCCGTATCTAAGAAAGATGTCCAGCCCCCGCCACAGCAGCAGCAACAACAACAACAGCGACCCAAGAGACAGGCCCCCGTGTCCTACTCGGAGACCGACGGCCTTCTCGAGGAATCTTATAGTGTCGAAGTCAACGACCCGTTGCGCTTGGAAGGACTTCAACAGTCGACCCCCGCTTCCGACTCCGAAGGCAGCCCCGAAGAACCACAAAAACTCTTCAAATGCAAGATATGCGACAAGTCATTTAACAGCGCCAAGTCGTTAAACGGCCACACTGGACATCACATCAGAGTTTTAAATGCGGGCAAAGCTGTGGAAGAACACAATTCACCGATTCTCAAAACTCAATTATCGAGGACCCTGTCGTATCGAGAGGATTCCTCGCAAGACTCGAAAAGCTCAGCCAAAAGCGGCAACATTTACCCGTGCCAACTTTGCAATAAACAGTTCAGATACAGCATCATGCTTAGCAGACACATGGACACTTGCACCGGATCGAAAACGACTAATGATGAAGCGAGCTATTCGGAAGACGTCCCGGCGACGCAACTCCACTGTCCCATCTGTTCAAAAGTTTTCAAAAAGAATCTGTACATGAAGAAGCACTTTAGGAGGTCCGCTTGCTGGCAGATCGCTCAAGAGAACTGGCAGTTAGGACAGCAAGGAGGAAATCAACCACCTTTTAAACAATCCTCAGCGGAATGCTCTAACTGCGATATCAAATTTCCGACGCATCTCTTGATGTTTAAGCATTTTCAGTCGTGCGTGCGCACGCAAGGTCCTGGTATCATACAGTGCAAGGCTTGCAAAATATCATACACACAAGTCAGTAGCTTGTATCGACACGTGAAGAAGTCGCATTACCCGTTTGAGACGGGGCGCGGGGACGTAATTTCTCCTGAAGATGCTAATGAGAGCATTGGAATCGACGAGGCGGACATAAATAACCAGAGTGCTAACAATGATGGAGAGGGGAGCTCTCTGAAGTGCCGCGAGTGTAGTCAGACGTTCACTGATCAGCATCAGCTGGTGATGCACCTGGCTGCGCACATGGCCAACATAAACAATCCCAAGCCGTTCGCGAGGGCGCCGGTCAAGTTTATAAAGAAACACTTTTGTCACAAGTGCAAAAAGGGCTTCAAGTACAAGAATAACCTCCGCAACCACCTGATGCAGCAACACCAGATGACCCCCGACGATGTGCAGCAGATGGACACCCCCGAGGAGTTCACCTGCGGCGTGTGCGGCAAGGGATTCAGCTCAGAGAGATCTCTGGTCTACCACCGCAACGCCAAGCACAACAAGCGGGGCATGAAGCCCGCCTACAACCGGCCGCACGTGCCGGGCGTCATACTTTTCAGCAAGgttccAGTGAGGTGCATGCTGTGTGACGTGACAACGCGGAACATCATCGAGACCAAGCGTCACAACCGCCTCCATCTTCAGCGCAATGAGAAGGTCAAGAACGAGTACGTCTGTCCGCAGTGCAACCGTCCCTTCACCAACATCCGCTACTTCCGGGCGCATCTCCGCGATCACAACGACAAGCTCCAGGTCGGCGCCCCCGAGGACAGCAAGGACGGCATCCTGGACGGGGAGGAGTATCCCGATGATCAGTACGATGATGACCAGTATGAAGAGGGAGAGGATGCATCTGAGTTTTGCGACGCCGTTGTCGGCAACATCAAAACAGAGCCGGGCGAGGAGGGGGAGGAAGACACGCCCAGCTGGCCACAGGAACTGAACTCCTCGCCACAGCAGCTGGTGGTCAGCGTGGGAGGTTTCAGCTGCACCGTGTGCGACAAGGTCATGGACACGCTGCCCGCCTACCGCCGCCACATGAGCTGGCACGCCTCGGGCAAGGTCAGCGGCAAGACCGTCACCTGCCCACTGTGCCCAGAGAACTTCATGTACGACACTCACCTCCGCATTCACATGAAGAAGCACGCCGAGGAAGCCGAGACCAACCCGGACTCTCTCATCTGTAAGATCTGCAAGCGACGCTCCAAGAACTTGCGCGGCTTCGTCTGCCACATCAACTGGCACCGGCGCATGAAGGAGCACCGCTGCGGCGTCTGTCAGAAACTGTTTGTCAGCCGGGCGCAGTACCTGGCGCACTACCGCAGTCACGTCAACCGCGGGGAGACGTCGCAGATCATTGAGAACTTCGACGAGGCAAACCAGACTGCGGAGCAAGCGACTCCCTTCCAATGCCAGATCTGTCAGAAATACATGCCTAGCCAAGTGTCTCTGAAGTACCACACGGCCTGGCACACTTCTGCCGGAGCTCTCGCTCGACGATACGACTGTGGGGAATGCAGCAAGATGTTCACATCAAAGACGAGACTTGCCATGCATAAGCGCCTCCACCGAGCCAACATAGACGGACAATTCAAATGTCCTATATGCCATAAACTTATGAAGAGTTCCGAGCACCTCACTTCACATATTAAATCGCACTCGTTCAACAACAGACTCAAACACGTCAAGATCACAAAAATCCCCGCCACCCAGGTGGCCTGTCCCGTGTGTTCGCTAGTGTTCCCCTTCCAGGCGAGGCTCAACAGGCATCTGCGCAACGCTCATCCGGAAAGCAAGATGGTCAAGAAACTCGATCCCGACGAGAACTACGtagtaaaaaaacacatctgCACGATATGCTGCAAAGAGTTCAGCACGGAGGGACACTTAATGAGACACAAAGTCTTGCATTCGAGGAAGAAAGAGTTTTTTAAATGCACGATCTGCGGCAGGAAGAGCGTCTCGCTGAAGACGCATCGGATGCACATCCGCGGCCACATGGCGCAGAGGTATAAAGATAATCCTCTGCAGTGCGAGAAGTGCGACAGCAAGTTTGAGCGCCGGCACGACCTGCACGCTCACATGTTCCACCTGCACGGAGTTTTGGAGACTTACATTGCGGCCGAAGGAGCTGAAGACAAGTTCGACAGCGAGCTACAGACCTTCCAGTGCCAGCAGTGTCGAAAAGTTCTCTCCACGGAGGTCACCTACCAGAAACATCTGGACTATCACAACTCGATGAGGTGCAACTACTGCTACAAGTACTTCAACAGCAAAGTGTTCTTGGAAGGACATCTTCTGTACGACTGCGATAGAAAGAAAGTCCTAGGCAATACCGATCCTTTTGAAAAGAAGATCAAATGTCATCTTTGCTACAAACCGTTCTCGATTCTCATCAAGCTGAATTGTCACCTGCGGGTCGCTCACCAGGTGGAGCCGAGCTACAACGTGAACAGAGATTTAAAACCGTCCGTGTGCGACTTCTGCTTTTCTGTGTTTTCCGGTGAAGAACAGATGCTGAAGCACCGAAGGTTCCACATCCGGTCGGGCTTCATGGGCTGCCGCTTCTGCAACAAGAAGTTCTCGACGATGCCGCTGTTCCAGAGACACAAGAGGAAGCATTTCGCTAAGTATTACGTTGACAATCCTCTGAAATGCGATTTCTGCGAAGAGAAGTTTGTCATGTTCAGCGCGTTCCTGTCTCATCTGAAGAACGCCCACGATCACGAGCCCGACTGGATCATTCGGCCCAAACCGTCACCCATAGAGGAGTGCCAGATCTGTCACAAAGAGTTCAGCAATCTTCACAATCACTTGATGTACCACGAGAAAAATAAGTGCAAAAAATGTGGCGAGTACTTCCTCTCTGAAACACTTTACGCGTCACATTCCTGCCACTTAGAGAGTGACGAAGAGGAGAAAACAGTCGAAATCAAACCAGTGACTCCTACCGTCGCGTTACCTgttgaaaacaattatgaaGAATGTGACTTCTGCTTTAAACCGTACACGAGTAATTATACAAAACCTATGCACATAAGAAGTCATACGAAGATCGTCTCTTTCGGATGCCGCTTCTGTGACAAACGATTCTCTGCGTTGACTCCATTTAATCTGCATTGCTTGAGGCACCGAACTCGACTTTACAAGATGGATCCGATCCGTTGCCGACATTGCGGGGACAGCTTTGTCAAATACAGCAACTACGTGTTGCATTTGAGAACGGTCCACAACGACAACGAGACGATGATCATGCGACCCAAGTATCCTCCCGAAGAATGTCGAGTTTGTCACAAGACTTTCTCGAACATCCACCACCACTACAGGTTCCACTTGAACTTCAAGTGTAAGGACTGCGGGAAGTACATATGCTCGGAGCGGCTGTTCAAAAACCACAGCTGTGCAGATCCAAATGAAGATCCTTCATTGATGTTTCAGTGTGAAGATGATATCGCTCCGTTGACCATCGGTTACTTTGACATCAATGACAGACGGCACGGCCCCGATATCGTCCTCCCCTATTTGGACAAACTGCCGGATCATCAGGAATACGACTACAACTCTACGTTAGACGATATCGATATAAACGAGTCCGAGTTGGACGATTCCGTTCTCGATAACGATGACGAACTAAGCAGAATGTCGCAATCGTCGGGATTGACGGGAAAAGATACTCTCGTATCCATTCCGGATGAAATCGCTTCGGGCAACGATATAACAAAACCGACGTCTTCGTTTGATAGCTTCACTCCGATTATTTCTTCGACCGTGTCATTGAGTTTGTCAGCTCCTGCTGACAGTGAAATGACGGAGAACGGCATCTGTGAAAATGAATCTGCAAACATTACCGAGGATAGTTTGAGTTTGCGCGAGTGCGGTGATGCTAAAGAAGACGGAGAAGATATCAGCGACCGAAGAGATTACAATGACTACTCCACTATGGAGGATGAGCCCTCGCCTAGTGATGAACCCATGAGAATCGATGAACTTTGTGTGAACGATAAACCTGTGGCAAACTCTGATCCTAAAGTGAGTGATGAGCTTTCTACGAATTCTGAACCCGTGGTGAATGACGAATCTTCAATGAACGTCGAGGGTTCACCGTCAATCGGCGAACCCATGGAAGAAGACTTGGATAATAATGACAATCTCGTGGCGGACGACCCCGCCGATGACAGTAGACAGATCACAAACAGTGATGACGTAGAAATCACATAA
- Protein Sequence
- MSLVLKLSKCRLCLKLGDFYSIFAVDNSMQLSKMAMACSEIKVQEGDGLPDKVCGECIEKLSSAYLFKQQCERSDVELRKSLLTNSAATEISSYGRRSSDSGFSTRTDVSVSKKDVQPPPQQQQQQQQRPKRQAPVSYSETDGLLEESYSVEVNDPLRLEGLQQSTPASDSEGSPEEPQKLFKCKICDKSFNSAKSLNGHTGHHIRVLNAGKAVEEHNSPILKTQLSRTLSYREDSSQDSKSSAKSGNIYPCQLCNKQFRYSIMLSRHMDTCTGSKTTNDEASYSEDVPATQLHCPICSKVFKKNLYMKKHFRRSACWQIAQENWQLGQQGGNQPPFKQSSAECSNCDIKFPTHLLMFKHFQSCVRTQGPGIIQCKACKISYTQVSSLYRHVKKSHYPFETGRGDVISPEDANESIGIDEADINNQSANNDGEGSSLKCRECSQTFTDQHQLVMHLAAHMANINNPKPFARAPVKFIKKHFCHKCKKGFKYKNNLRNHLMQQHQMTPDDVQQMDTPEEFTCGVCGKGFSSERSLVYHRNAKHNKRGMKPAYNRPHVPGVILFSKVPVRCMLCDVTTRNIIETKRHNRLHLQRNEKVKNEYVCPQCNRPFTNIRYFRAHLRDHNDKLQVGAPEDSKDGILDGEEYPDDQYDDDQYEEGEDASEFCDAVVGNIKTEPGEEGEEDTPSWPQELNSSPQQLVVSVGGFSCTVCDKVMDTLPAYRRHMSWHASGKVSGKTVTCPLCPENFMYDTHLRIHMKKHAEEAETNPDSLICKICKRRSKNLRGFVCHINWHRRMKEHRCGVCQKLFVSRAQYLAHYRSHVNRGETSQIIENFDEANQTAEQATPFQCQICQKYMPSQVSLKYHTAWHTSAGALARRYDCGECSKMFTSKTRLAMHKRLHRANIDGQFKCPICHKLMKSSEHLTSHIKSHSFNNRLKHVKITKIPATQVACPVCSLVFPFQARLNRHLRNAHPESKMVKKLDPDENYVVKKHICTICCKEFSTEGHLMRHKVLHSRKKEFFKCTICGRKSVSLKTHRMHIRGHMAQRYKDNPLQCEKCDSKFERRHDLHAHMFHLHGVLETYIAAEGAEDKFDSELQTFQCQQCRKVLSTEVTYQKHLDYHNSMRCNYCYKYFNSKVFLEGHLLYDCDRKKVLGNTDPFEKKIKCHLCYKPFSILIKLNCHLRVAHQVEPSYNVNRDLKPSVCDFCFSVFSGEEQMLKHRRFHIRSGFMGCRFCNKKFSTMPLFQRHKRKHFAKYYVDNPLKCDFCEEKFVMFSAFLSHLKNAHDHEPDWIIRPKPSPIEECQICHKEFSNLHNHLMYHEKNKCKKCGEYFLSETLYASHSCHLESDEEEKTVEIKPVTPTVALPVENNYEECDFCFKPYTSNYTKPMHIRSHTKIVSFGCRFCDKRFSALTPFNLHCLRHRTRLYKMDPIRCRHCGDSFVKYSNYVLHLRTVHNDNETMIMRPKYPPEECRVCHKTFSNIHHHYRFHLNFKCKDCGKYICSERLFKNHSCADPNEDPSLMFQCEDDIAPLTIGYFDINDRRHGPDIVLPYLDKLPDHQEYDYNSTLDDIDINESELDDSVLDNDDELSRMSQSSGLTGKDTLVSIPDEIASGNDITKPTSSFDSFTPIISSTVSLSLSAPADSEMTENGICENESANITEDSLSLRECGDAKEDGEDISDRRDYNDYSTMEDEPSPSDEPMRIDELCVNDKPVANSDPKVSDELSTNSEPVVNDESSMNVEGSPSIGEPMEEDLDNNDNLVADDPADDSRQITNSDDVEIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -