Gcon039765.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01016985.1:26194-28476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2e-06 0.00039 22.0 2.5 1 23 155 177 155 177 0.98 2 15 0.0032 0.39 12.5 0.3 1 23 180 203 180 203 0.95 3 15 0.11 14 7.7 0.0 2 23 211 232 210 232 0.96 4 15 0.00087 0.11 14.3 2.0 1 21 238 258 238 259 0.95 5 15 0.0038 0.47 12.3 0.3 1 22 266 287 266 289 0.87 6 15 0.0022 0.28 13.0 10.7 1 23 391 413 391 413 0.97 7 15 6.3e-05 0.0078 17.9 1.3 1 19 419 437 419 441 0.95 8 15 4.3e-05 0.0054 18.4 0.4 1 23 447 470 447 470 0.91 9 15 7.6e-05 0.0094 17.6 0.6 3 23 482 502 481 502 0.98 10 15 0.00011 0.014 17.1 2.6 2 23 509 530 508 530 0.97 11 15 9.5e-06 0.0012 20.5 1.7 1 23 536 558 536 558 0.96 12 15 0.0007 0.086 14.6 1.8 1 23 564 586 564 586 0.98 13 15 1e-06 0.00013 23.5 1.4 3 23 594 614 592 614 0.96 14 15 1.1e-05 0.0014 20.2 0.7 1 23 620 642 620 642 0.98 15 15 3.1e-05 0.0039 18.8 0.9 1 23 647 670 647 670 0.98
Sequence Information
- Coding Sequence
- ATGGAAATCCGTATCGATCGCGCGTGTCGTGGCTGTCTCAAAGAAGAGGGAGAGATGCGCGGACTGTTCACTAAGGACGCCGGACTCAAGCCGAGCCTCTTAGACATGTTACTCAACAGCACAAGGATACAAATGTGTGAAAACGACGGATTGCCGTGCCAGATATGCGCGGAGTGCATCGCCAAGCTGCACAACGCCTTCACCTTCAAATACATGTGCGAAATATCTGACGCGAGACTAAAAAAGTTCATCAAGAGCACCTCGCCGACGTCGAACGTTTTCGTCCCCAAGCAAGAGTCCGCAGCGCAATCTAACGAAATAATAGATTTCAGTTCCATGTTCAATTCAGATTTAGTTTCAATCAAAACCGAAAGCGAAAGTCACAACGTCGATCTAGACGCGAAAAACGGCATCGAAAAATCAACGCAGACAATTTCGCCGGACGAAGAAGACGTAAAGAAGTTCAGCTGTTCGCAGTGTGACAAGAGCTTCAGAACCGCTCTCAGTTTTAAAGCTCACATGAAGAAGCACTCTAAATATGCTTGCGAAACTTGCGGGAAGCTTTTCGATAATGAGACGTCAGTTAAGAAGCACGCAAGCAAAGCGCACGTCAATGAAGCTAAAAAGCTAGAGTGTCCGGTTTGCGGTATTGGGTGTGAAGAAGTGGAAGCGCTAGTAGAGCACATAAAGGAGCACAGAAAAAAAGATAGTCATACTTGCGAAAACTGCGAGAGGCGCTTCGCCAAGTCCAGCTCTTATGAACGACATCTCAAGTTTTGCTCGGAAGGCAAACAACATCCTTGCTTCGCTTGCGGTAAGAAATTCAGTTCTCCGAAAGCTCTGATCTTACACAACGAGTTGATTCACGGTAAAAAAGAATCTGACGATGACGACGATGATGATTTTAAAGCAGATTTTTCATCAGTCGATATACCAGAAAAGCGAAGTAGAGTCAACGGGGACGCACCCGAAGAGAGCGGGACGGCTTACGCGTTCGAACAAATAATGGAACCCGTCGTCAACATCAAAGAAGAACTTCTCGACGAACCGATAGACGCTTCAGATAAAAGTGACGACAGTTTCGGGTTCGGAGCCGATTTCGAAGAACCGCTCGCTCAGCGATATCCTAAAAAGTCTAAGAAGCGGTCGTCGCAGGACGAAAAGGCCATCCATCACTGCTCGCTCTGCAAGAAGTCTTTTATAAGATTGCATCATCTGAAACGGCACGAAATGACGCACAAAACGGGAAAGAAGTACGAGTGCGATCTCTGCGATAAGACCTTCGCGAGAGGAGATCATCTGAGGCGGCACAAGTGGCAGCATGTCGAAGTCAAACCGTACGCTTGCAATCAGTGCAATAAAGGCTTCACCAGACCAGAACAGCTCGATAGACATAAAATTGCTAAGCATTCGGCAGAAGAGAAAGCGCCGAAAACTGTTTTTTGTACGTTATGTCCGAAAGGTTTCACTTCTGAGAAGTATCTAGATTCTCATATGCGCGTTCACGCTGTCGATAAAGGCATCGTCTGCAAACGTTGCAGCAAAACATTTGAAACAAAGTTTGAATTAAAAGAACACAAGAAAACACATGCGGCCGATAAACCTTTCTTATGCACCGAGTGCGGGCAATGCTTCATCAAGAACGAGTACTTGGTCGTGCACATGCGGCGACATCGCGGAGAAAAGCCGTTCAAATGCAGATTCTGCGATAAAGGTTTCTTCCGAACGACAGATCTTGTCGCGCATGAACGCTACCACACGGAAGAAAAGACGCATCTCTGCACGATCTGCGGGAAAGGTTTCCAAAGGCAGTACAACTTAACTGTCCATCTTCGTGTTCACACGGGAGAGAAACCTTACGCTTGTTCGTATTGTGAAAAACGTTTCGCTCAAGGAAACGATCTTAAGTCGCATATTCGGCGACACACTGGAGAACGTTTTAAATGTGAAGTGTGCGGCGAAGGTTTCATTCAAGGTTATCATTTAACGCAGCATAAGCGTAGCGTTCACGGGATAGAATGCGCGACCCCTGTGCGCCGTGTCGAGAAACATCCCAACGCTCAGCCCGTTAGCACAGGACCGAAAAGCACGAGAAGTAAAAACTTTGCTAAGAAGCAACTGGCGCATATGGCAGCTCTCGCCGAGCAACTACGCGTGTCGGGGGCAATGCCTTATCCGTTCTTGAAGCCGGTGGTGGAGGCTCGAGCGTTGGAAATCCTCAAAGCCGAGAGTGCAGCTTCGGCAGCTGAAATTCCGGCAGAAATCAAGACCCCCGTTGAATAA
- Protein Sequence
- MEIRIDRACRGCLKEEGEMRGLFTKDAGLKPSLLDMLLNSTRIQMCENDGLPCQICAECIAKLHNAFTFKYMCEISDARLKKFIKSTSPTSNVFVPKQESAAQSNEIIDFSSMFNSDLVSIKTESESHNVDLDAKNGIEKSTQTISPDEEDVKKFSCSQCDKSFRTALSFKAHMKKHSKYACETCGKLFDNETSVKKHASKAHVNEAKKLECPVCGIGCEEVEALVEHIKEHRKKDSHTCENCERRFAKSSSYERHLKFCSEGKQHPCFACGKKFSSPKALILHNELIHGKKESDDDDDDDFKADFSSVDIPEKRSRVNGDAPEESGTAYAFEQIMEPVVNIKEELLDEPIDASDKSDDSFGFGADFEEPLAQRYPKKSKKRSSQDEKAIHHCSLCKKSFIRLHHLKRHEMTHKTGKKYECDLCDKTFARGDHLRRHKWQHVEVKPYACNQCNKGFTRPEQLDRHKIAKHSAEEKAPKTVFCTLCPKGFTSEKYLDSHMRVHAVDKGIVCKRCSKTFETKFELKEHKKTHAADKPFLCTECGQCFIKNEYLVVHMRRHRGEKPFKCRFCDKGFFRTTDLVAHERYHTEEKTHLCTICGKGFQRQYNLTVHLRVHTGEKPYACSYCEKRFAQGNDLKSHIRRHTGERFKCEVCGEGFIQGYHLTQHKRSVHGIECATPVRRVEKHPNAQPVSTGPKSTRSKNFAKKQLAHMAALAEQLRVSGAMPYPFLKPVVEARALEILKAESAASAAEIPAEIKTPVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -