Gcon019691.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01073024.1:13548-22941[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2e-06 0.00027 22.5 1.0 1 23 139 161 139 161 0.98 2 13 2.1e-06 0.00026 22.5 2.4 1 23 167 189 167 189 0.98 3 13 3.9 4.8e+02 2.8 5.8 3 23 206 226 205 226 0.94 4 13 4.6e-05 0.0056 18.3 2.3 2 23 235 256 234 256 0.97 5 13 0.00061 0.076 14.8 4.5 1 23 262 284 262 284 0.98 6 13 0.00059 0.073 14.8 3.7 1 23 293 315 293 315 0.97 7 13 9.7e-07 0.00012 23.6 1.5 2 23 322 343 321 343 0.97 8 13 1.5e-05 0.0019 19.8 5.3 1 23 349 371 349 371 0.96 9 13 3.3e-07 4.1e-05 25.1 0.2 1 23 377 399 377 399 0.98 10 13 5e-06 0.00062 21.3 1.2 3 23 407 427 405 427 0.97 11 13 1e-05 0.0013 20.4 0.9 1 23 433 454 433 454 0.98 12 13 4.3e-06 0.00054 21.5 1.8 1 23 460 482 460 482 0.95 13 13 7.4e-05 0.0092 17.7 4.0 1 23 488 511 488 511 0.96
Sequence Information
- Coding Sequence
- ATGTGCGCGGATGAATTATCTGAACTGTCTGACAACAAGGCGGATGCGTACGAATGCAAAACAAGCCAATACGAAAACAAAGAGGAGCCCCTGGACTATGAAGAGTTCCTGGATGGTGAGTTCCAGGACTCCCCCGGCAAGCAGACCGCAGCCAAGACTAAGCTGTCCATCACCATCAAGCCGGGGGGCGACTCAGTGAGAGTAATACGCAGGAAAGATGGTAATAAAAAGAACAatgaaaataaatttaccaaACCTACAGCATTCAGACCAGTGAAATCACTGGCCAGCCTTTCTAGAAAATACCAAGAAGCCCACagaagcaaacaaaaaaaagttgtgGAATCCGGCATGACAACCAGgattcctctgattaacaaaaaaaaagaaaaagtataTTCTAAAGAGTGTGGATTTACCTGTATGGTGTGTGGAAAAGGATTcacagATCGCCGAAAGTTGACCCGCCATGAAAGGATACATTTGGTTGTGAAACCGTTTTATTGCAACGTCTGTAGAAAAGGTTTCAATGAATCGAGTGACCTGAAGCGGCACCAGCGCAAGCACTCGCGCGCGCCCGAGCCGAGCGCGGAGGCCGGGCCGCAGCGCCTGCTGTGCCCGCACTGCCACCTCACCTTCAGCTGCGAGGGCGACCTGCACATCCACTCCTCCGTGCACCTGGCGGCCGGCCTCGGCAAGAGCGTCTGCCAGCACTGCAGCAAGGAGTTCGACACCCAGCTGCAGCTGAAGCGGCACGTGCGCATCCACCTGTCGGACAAGCCGCACAAGTGCCGCGTGTGCCACAAGGGCTTCCCGGAGATGGGCTCGCTCACGCGCCACTACCGGCGCCACACGGGCGAGGCCCGCGAGAAGAAGCACATCTGCAGCAAGTGCGGCAAAGGCTACTTCGACCGCCACTCCCTGAGCATCCACGAGCGCACGCACACCGGCGAGCGGCCTTGGATCTGCTCCCACTGCGGGCGCGGCTTCACCGACTCCCGCCTCCTTAACTCTCACATGAAGACCCACAGCGACCTCAAGCCACACGCCTGCTCCATGTGCGACAAGAGatttaaacacgactcaaccttgactaCGCACATCCGCACGCACACCGGTGAGAAGCCCTACATCTGCACCGTGTGTGGGAACGCCTTTGTGCAATCCTCCAACCTCTCGCTGCACATGAGGACACACACACGTGAGCGGCCTTACGGCTGTGAGTACTGCAGCAAGAAGTTCTCCAGCTCTTCAGCGCTAACGACTCACAAACGCATCCACACCGGAGAGAAACCTTACAAATGCAAGATTTGCGATAAAAGGTTTGCACGATACGACTTGTCGGCGCATATGCGCATCCACACCGGAGAGAAGCCGTTCCTGTGCTCCGTCTGCCAGAAGGGCTTCACCACACCCAACCAGCTGCACCAGCACATGCGGATACACACAGGTGAAAGACCTTTCGTATGCACCATATGCAACAAGGGCTGCATGACCTCGAGCTACCTCAAGCGGCACATGTTCAAGTCACACAACATGGCCGCTCCCGCTCTCAACCTCACAGAGCTGCCGCCCAAGCTCGAGAAGACTGAAGAACTGGAGGCCGACCCGGAGGAAGACAAGACTCTCGTAACTCAAGAAGAGGCCGACCAGGTCATGACCTGCCTCGCGGAAACAGTCACTCTGACCACCAGCCCGGTGTCCTCGACATACGGCAACACCTTGAACGTGGTGGCAGTCGCCAGCTCCGGGCAGCTCAGCGTGACTTCCCTGTCCGGGGAGCGGCTCTATCAGATAGACCCGGCTCTGCTGCGCCTGCACCACGTGTCTGCCTCGGGGCTCATCCACTCGGGGCAGCTCACCATCGAAGATATTCCCAATGAGAATAataacACCTCACAACAATGTACCATCATACAGCTACAATCTGAAGACTAG
- Protein Sequence
- MCADELSELSDNKADAYECKTSQYENKEEPLDYEEFLDGEFQDSPGKQTAAKTKLSITIKPGGDSVRVIRRKDGNKKNNENKFTKPTAFRPVKSLASLSRKYQEAHRSKQKKVVESGMTTRIPLINKKKEKVYSKECGFTCMVCGKGFTDRRKLTRHERIHLVVKPFYCNVCRKGFNESSDLKRHQRKHSRAPEPSAEAGPQRLLCPHCHLTFSCEGDLHIHSSVHLAAGLGKSVCQHCSKEFDTQLQLKRHVRIHLSDKPHKCRVCHKGFPEMGSLTRHYRRHTGEAREKKHICSKCGKGYFDRHSLSIHERTHTGERPWICSHCGRGFTDSRLLNSHMKTHSDLKPHACSMCDKRFKHDSTLTTHIRTHTGEKPYICTVCGNAFVQSSNLSLHMRTHTRERPYGCEYCSKKFSSSSALTTHKRIHTGEKPYKCKICDKRFARYDLSAHMRIHTGEKPFLCSVCQKGFTTPNQLHQHMRIHTGERPFVCTICNKGCMTSSYLKRHMFKSHNMAAPALNLTELPPKLEKTEELEADPEEDKTLVTQEEADQVMTCLAETVTLTTSPVSSTYGNTLNVVAVASSGQLSVTSLSGERLYQIDPALLRLHHVSASGLIHSGQLTIEDIPNENNNTSQQCTIIQLQSED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -